RNA–Protein interactions for RNA: ENST00000231656.12

CDX1-201, Transcript of caudal type homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDX1, Length 1,758 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-201ENST00000231656 CNSTQ6PJW8 725 aa22.64■■□□□ 1.22
CDX1-201ENST00000231656 CENPLQ8N0S6 344 aaPredicted RBP22.64■■□□□ 1.22
CDX1-201ENST00000231656 GABPB2Q8TAK5 448 aaPredicted RBP22.64■■□□□ 1.22
CDX1-201ENST00000231656 BRSK1Q8TDC3 778 aa22.64■■□□□ 1.22
CDX1-201ENST00000231656 HLA-CQ95604 372 aa22.64■■□□□ 1.22
CDX1-201ENST00000231656 NUDCD1Q96RS6 583 aa22.64■■□□□ 1.22
CDX1-201ENST00000231656 SCUBE2Q9NQ36 999 aa22.64■■□□□ 1.22
CDX1-201ENST00000231656 CAMSAP3Q9P1Y5 1249 aaPredicted RBP22.64■■□□□ 1.22
CDX1-201ENST00000231656 ZFP69BQ9UJL9 534 aa22.64■■□□□ 1.22
CDX1-201ENST00000231656 RIMKLBQ9ULI2 386 aa22.64■■□□□ 1.22
CDX1-201ENST00000231656 CFAP73A6NFT4 308 aa22.63■■□□□ 1.21
CDX1-201ENST00000231656 ZNF821O75541 412 aaPredicted RBP22.63■■□□□ 1.21
CDX1-201ENST00000231656 LYPLA1O75608 230 aaPredicted RBP22.63■■□□□ 1.21
CDX1-201ENST00000231656 RASSF9O75901 435 aa22.63■■□□□ 1.21
CDX1-201ENST00000231656 APOA4P06727 396 aa22.63■■□□□ 1.21
CDX1-201ENST00000231656 STMN1P16949 149 aa22.63■■□□□ 1.21
CDX1-201ENST00000231656 CRABP2P29373 138 aa22.63■■□□□ 1.21
CDX1-201ENST00000231656 TAS2R39P59534 338 aa22.63■■□□□ 1.21
CDX1-201ENST00000231656 ASRGL1Q7L266 308 aa22.63■■□□□ 1.21
CDX1-201ENST00000231656 CLNKQ7Z7G1 428 aa22.63■■□□□ 1.21
CDX1-201ENST00000231656 CILP2Q8IUL8 1156 aa22.63■■□□□ 1.21
CDX1-201ENST00000231656 TMEM151AQ8N4L1 468 aa22.63■■□□□ 1.21
CDX1-201ENST00000231656 BLOC1S5Q8TDH9 187 aa22.63■■□□□ 1.21
CDX1-201ENST00000231656 WFIKKN2Q8TEU8 576 aa22.63■■□□□ 1.21
CDX1-201ENST00000231656 ELMO2Q96JJ3 720 aa22.63■■□□□ 1.21
CDX1-201ENST00000231656 TXLNGQ9NUQ3 528 aa22.63■■□□□ 1.21
CDX1-201ENST00000231656 TICRRQ7Z2Z1 1910 aa22.63■■□□□ 1.21
CDX1-201ENST00000231656 CCL22O00626 93 aa22.63■■□□□ 1.21
CDX1-201ENST00000231656 OPRD1P41143 372 aa22.63■■□□□ 1.21
CDX1-201ENST00000231656 POU4F1Q01851 419 aa22.63■■□□□ 1.21
CDX1-201ENST00000231656 ITGA9Q13797 1035 aa22.63■■□□□ 1.21
CDX1-201ENST00000231656 ZNF460Q14592 562 aa22.63■■□□□ 1.21
CDX1-201ENST00000231656 ITPRIPL2Q3MIP1 535 aa22.63■■□□□ 1.21
CDX1-201ENST00000231656 DGKKQ5KSL6 1271 aa22.63■■□□□ 1.21
CDX1-201ENST00000231656 ATXN7L2Q5T6C5 722 aaPredicted RBP22.63■■□□□ 1.21
CDX1-201ENST00000231656 GRAMD4Q6IC98 578 aa22.63■■□□□ 1.21
CDX1-201ENST00000231656 ATG14Q6ZNE5 492 aa22.63■■□□□ 1.21
CDX1-201ENST00000231656 LMNTD2Q8IXW0 634 aa22.63■■□□□ 1.21
CDX1-201ENST00000231656 KCTD4Q8WVF5 259 aa22.63■■□□□ 1.21
CDX1-201ENST00000231656 SORT1Q99523 831 aa22.63■■□□□ 1.21
CDX1-201ENST00000231656 OMDQ99983 421 aa22.63■■□□□ 1.21
CDX1-201ENST00000231656 TM6SF2Q9BZW4 377 aa22.63■■□□□ 1.21
CDX1-201ENST00000231656 BRD9Q9H8M2 597 aa22.63■■□□□ 1.21
CDX1-201ENST00000231656 SLCO3A1Q9UIG8 710 aa22.63■■□□□ 1.21
CDX1-201ENST00000231656 ACOT9Q9Y305 439 aa22.63■■□□□ 1.21
CDX1-201ENST00000231656 ARL5AQ9Y689 179 aa22.63■■□□□ 1.21
CDX1-201ENST00000231656 SBK3P0C264 359 aa22.62■■□□□ 1.21
CDX1-201ENST00000231656 T-ENOLP0DO92 83 aa22.62■■□□□ 1.21
CDX1-201ENST00000231656 ARRB2P32121 409 aa22.62■■□□□ 1.21
CDX1-201ENST00000231656 CLCN5P51795 746 aa22.62■■□□□ 1.21
CDX1-201ENST00000231656 RBM20Q5T481 1227 aaKnown RBP22.62■■□□□ 1.21
CDX1-201ENST00000231656 NAIF1Q69YI7 327 aaPredicted RBP22.62■■□□□ 1.21
CDX1-201ENST00000231656 PTAR1Q7Z6K3 402 aaPredicted RBP22.62■■□□□ 1.21
CDX1-201ENST00000231656 GPATCH11Q8N954 259 aa22.62■■□□□ 1.21
CDX1-201ENST00000231656 OR6P1Q8NGX9 317 aa22.62■■□□□ 1.21
CDX1-201ENST00000231656 RDH11Q8TC12 318 aa22.62■■□□□ 1.21
CDX1-201ENST00000231656 SORCS1Q8WY21 1168 aa22.62■■□□□ 1.21
CDX1-201ENST00000231656 CHFRQ96EP1 664 aa22.62■■□□□ 1.21
CDX1-201ENST00000231656 DNAJC1Q96KC8 554 aaKnown RBP22.62■■□□□ 1.21
CDX1-201ENST00000231656 GPR78Q96P69 363 aa22.62■■□□□ 1.21
CDX1-201ENST00000231656 TDRD1Q9BXT4 1180 aaKnown RBP22.62■■□□□ 1.21
CDX1-201ENST00000231656 CIPCQ9C0C6 399 aa22.62■■□□□ 1.21
CDX1-201ENST00000231656 MARCH4Q9P2E8 410 aaPredicted RBP22.62■■□□□ 1.21
CDX1-201ENST00000231656 MARCOQ9UEW3 520 aaPredicted RBP22.62■■□□□ 1.21
CDX1-201ENST00000231656 MID2Q9UJV3 735 aa22.62■■□□□ 1.21
CDX1-201ENST00000231656 ERVW-1Q9UQF0 538 aa22.62■■□□□ 1.21
CDX1-201ENST00000231656 ARIH1Q9Y4X5 557 aaPredicted RBP22.62■■□□□ 1.21
CDX1-201ENST00000231656 ATP5HO75947 161 aa22.61■■□□□ 1.21
CDX1-201ENST00000231656 PRLP01236 227 aa22.61■■□□□ 1.21
CDX1-201ENST00000231656 SERPINB3P29508 390 aa22.61■■□□□ 1.21
CDX1-201ENST00000231656 PRAMEP78395 509 aa22.61■■□□□ 1.21
CDX1-201ENST00000231656 AAK1Q2M2I8 961 aa22.61■■□□□ 1.21
CDX1-201ENST00000231656 HABP4Q5JVS0 413 aaKnown RBP22.61■■□□□ 1.21
CDX1-201ENST00000231656 PHTF2Q8N3S3 785 aa22.61■■□□□ 1.21
CDX1-201ENST00000231656 CYB5D2Q8WUJ1 264 aa22.61■■□□□ 1.21
CDX1-201ENST00000231656 ISG20Q96AZ6 181 aaKnown RBP22.61■■□□□ 1.21
CDX1-201ENST00000231656 TBATAQ96M53 351 aa22.61■■□□□ 1.21
CDX1-201ENST00000231656 TSNARE1Q96NA8 513 aa22.61■■□□□ 1.21
CDX1-201ENST00000231656 PHF7Q9BWX1 381 aaPredicted RBP22.61■■□□□ 1.21
CDX1-201ENST00000231656 TRIM33Q9UPN9 1127 aa22.61■■□□□ 1.21
CDX1-201ENST00000231656 RUVBL2Q9Y230 463 aaKnown RBP22.61■■□□□ 1.21
CDX1-201ENST00000231656 DNAJC16Q9Y2G8 782 aa22.61■■□□□ 1.21
CDX1-201ENST00000231656 SPO11Q9Y5K1 396 aa22.61■■□□□ 1.21
CDX1-201ENST00000231656 MYO10Q9HD67 2058 aa22.61■■□□□ 1.21
CDX1-201ENST00000231656 A0A087X1B8 175 aa22.61■■□□□ 1.21
CDX1-201ENST00000231656 OR51F1A6NGY5 319 aa22.61■■□□□ 1.21
CDX1-201ENST00000231656 PALM2-AKAP2B1ALY0 433 aaPredicted RBP22.61■■□□□ 1.21
CDX1-201ENST00000231656 RPP40O75818 363 aaKnown RBP22.61■■□□□ 1.21
CDX1-201ENST00000231656 PIRTP0C851 137 aa22.61■■□□□ 1.21
CDX1-201ENST00000231656 KITP10721 976 aa22.61■■□□□ 1.21
CDX1-201ENST00000231656 ABCE1P61221 599 aaKnown RBP22.61■■□□□ 1.21
CDX1-201ENST00000231656 KDSRQ06136 332 aa22.61■■□□□ 1.21
CDX1-201ENST00000231656 DLG1Q12959 904 aa22.61■■□□□ 1.21
CDX1-201ENST00000231656 PTPRCAPQ14761 206 aa22.61■■□□□ 1.21
CDX1-201ENST00000231656 NCEH1Q6PIU2 408 aa22.61■■□□□ 1.21
CDX1-201ENST00000231656 ZYG11AQ6WRX3 759 aa22.61■■□□□ 1.21
CDX1-201ENST00000231656 STYXQ8WUJ0 223 aa22.61■■□□□ 1.21
CDX1-201ENST00000231656 KLHL29Q96CT2 875 aa22.61■■□□□ 1.21
CDX1-201ENST00000231656 MRGPRX3Q96LB0 322 aa22.61■■□□□ 1.21
CDX1-201ENST00000231656 TNKS2Q9H2K2 1166 aa22.61■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms