RNA–Protein interactions for RNA: ENST00000381753.8

LIMCH1-202, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,705 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-202ENST00000381753 PLOD1Q02809 727 aaPredicted RBP9.21□□□□□ -0.94
LIMCH1-202ENST00000381753 PPP1R26Q5T8A7 1209 aaPredicted RBP9.21□□□□□ -0.94
LIMCH1-202ENST00000381753 GPSM1Q86YR5 675 aa9.21□□□□□ -0.94
LIMCH1-202ENST00000381753 CCNJLQ8IV13 435 aa9.21□□□□□ -0.94
LIMCH1-202ENST00000381753 OR7D4Q8NG98 312 aa9.21□□□□□ -0.94
LIMCH1-202ENST00000381753 MOSPD2Q8NHP6 518 aa9.21□□□□□ -0.94
LIMCH1-202ENST00000381753 NACC2Q96BF6 587 aa9.21□□□□□ -0.94
LIMCH1-202ENST00000381753 CCDC126Q96EE4 140 aa9.21□□□□□ -0.94
LIMCH1-202ENST00000381753 LRCH3Q96II8 777 aa9.21□□□□□ -0.94
LIMCH1-202ENST00000381753 ELAC2Q9BQ52 826 aaKnown RBP9.21□□□□□ -0.94
LIMCH1-202ENST00000381753 DEFB126Q9BYW3 111 aa9.21□□□□□ -0.94
LIMCH1-202ENST00000381753 PCDH9Q9HC56 1237 aa9.21□□□□□ -0.94
LIMCH1-202ENST00000381753 NKIRAS2Q9NYR9 191 aa9.21□□□□□ -0.94
LIMCH1-202ENST00000381753 OGDHLQ9ULD0 1010 aa9.21□□□□□ -0.94
LIMCH1-202ENST00000381753 SCML1Q9UN30 329 aa9.21□□□□□ -0.94
LIMCH1-202ENST00000381753 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP9.21□□□□□ -0.94
LIMCH1-202ENST00000381753 A0A0G2JND7 137 aa9.21□□□□□ -0.94
LIMCH1-202ENST00000381753 A0A1W2PQU0 124 aa9.21□□□□□ -0.94
LIMCH1-202ENST00000381753 MAGEB16A2A368 324 aa9.21□□□□□ -0.94
LIMCH1-202ENST00000381753 LINC01553A4QN01 128 aa9.21□□□□□ -0.94
LIMCH1-202ENST00000381753 PSTPIP1O43586 416 aa9.21□□□□□ -0.94
LIMCH1-202ENST00000381753 HEXAP06865 529 aa9.21□□□□□ -0.94
LIMCH1-202ENST00000381753 RBP1P09455 135 aa9.21□□□□□ -0.94
LIMCH1-202ENST00000381753 CLCN1P35523 988 aa9.21□□□□□ -0.94
LIMCH1-202ENST00000381753 INHBCP55103 352 aa9.21□□□□□ -0.94
LIMCH1-202ENST00000381753 RPS3AP61247 264 aaKnown RBP9.21□□□□□ -0.94
LIMCH1-202ENST00000381753 DHCR24Q15392 516 aa9.21□□□□□ -0.94
LIMCH1-202ENST00000381753 CDKN3Q16667 212 aa9.21□□□□□ -0.94
LIMCH1-202ENST00000381753 TMEM240Q5SV17 173 aa9.21□□□□□ -0.94
LIMCH1-202ENST00000381753 LRRTM4Q86VH4 590 aa9.21□□□□□ -0.94
LIMCH1-202ENST00000381753 VN1R2Q8NFZ6 395 aa9.21□□□□□ -0.94
LIMCH1-202ENST00000381753 OVCA2Q8WZ82 227 aa9.21□□□□□ -0.94
LIMCH1-202ENST00000381753 CHKBQ9Y259 395 aa9.21□□□□□ -0.94
LIMCH1-202ENST00000381753 E9PAM4 449 aa9.2□□□□□ -0.94
LIMCH1-202ENST00000381753 PJA2O43164 708 aa9.2□□□□□ -0.94
LIMCH1-202ENST00000381753 SEC22BO75396 215 aa9.2□□□□□ -0.94
LIMCH1-202ENST00000381753 DLDP09622 509 aaKnown RBP9.2□□□□□ -0.94
LIMCH1-202ENST00000381753 EPORP19235 508 aa9.2□□□□□ -0.94
LIMCH1-202ENST00000381753 FBLP22087 321 aaKnown RBP9.2□□□□□ -0.94
LIMCH1-202ENST00000381753 FAAP100Q0VG06 881 aa9.2□□□□□ -0.94
LIMCH1-202ENST00000381753 HYAL2Q12891 473 aa9.2□□□□□ -0.94
LIMCH1-202ENST00000381753 GPR17Q13304 367 aa9.2□□□□□ -0.94
LIMCH1-202ENST00000381753 MACC1Q6ZN28 852 aa9.2□□□□□ -0.94
LIMCH1-202ENST00000381753 C12orf40Q86WS4 652 aa9.2□□□□□ -0.94
LIMCH1-202ENST00000381753 HTR3CQ8WXA8 447 aa9.2□□□□□ -0.94
LIMCH1-202ENST00000381753 ERP27Q96DN0 273 aa9.2□□□□□ -0.94
LIMCH1-202ENST00000381753 CRELD1Q96HD1 420 aa9.2□□□□□ -0.94
LIMCH1-202ENST00000381753 CCDC177Q9NQR7 707 aaPredicted RBP9.2□□□□□ -0.94
LIMCH1-202ENST00000381753 CACNG4Q9UBN1 327 aa9.2□□□□□ -0.94
LIMCH1-202ENST00000381753 HCFC2Q9Y5Z7 792 aa9.2□□□□□ -0.94
LIMCH1-202ENST00000381753 CAPN8A6NHC0 703 aa9.2□□□□□ -0.94
LIMCH1-202ENST00000381753 FOXN3O00409 490 aaPredicted RBP9.2□□□□□ -0.94
LIMCH1-202ENST00000381753 KLK10O43240 276 aa9.2□□□□□ -0.94
LIMCH1-202ENST00000381753 OR1F1O43749 312 aa9.2□□□□□ -0.94
LIMCH1-202ENST00000381753 PIK3R1P27986 724 aa9.2□□□□□ -0.94
LIMCH1-202ENST00000381753 C9orf50Q5SZB4 431 aa9.2□□□□□ -0.94
LIMCH1-202ENST00000381753 KLHDC7AQ5VTJ3 777 aa9.2□□□□□ -0.94
LIMCH1-202ENST00000381753 STRADAQ7RTN6 431 aa9.2□□□□□ -0.94
LIMCH1-202ENST00000381753 PRUNE1Q86TP1 453 aa9.2□□□□□ -0.94
LIMCH1-202ENST00000381753 STK32CQ86UX6 486 aa9.2□□□□□ -0.94
LIMCH1-202ENST00000381753 LSMEM2Q8N112 164 aa9.2□□□□□ -0.94
LIMCH1-202ENST00000381753 ECSITQ9BQ95 431 aa9.2□□□□□ -0.94
LIMCH1-202ENST00000381753 CCDC86Q9H6F5 360 aaKnown RBP9.2□□□□□ -0.94
LIMCH1-202ENST00000381753 MAFFQ9ULX9 164 aa9.2□□□□□ -0.94
LIMCH1-202ENST00000381753 AGFG2O95081 481 aa9.2□□□□□ -0.94
LIMCH1-202ENST00000381753 F11P03951 625 aa9.2□□□□□ -0.94
LIMCH1-202ENST00000381753 FHP07954 510 aa9.2□□□□□ -0.94
LIMCH1-202ENST00000381753 HAPLN1P10915 354 aaPredicted RBP9.2□□□□□ -0.94
LIMCH1-202ENST00000381753 GRIN2CQ14957 1233 aa9.2□□□□□ -0.94
LIMCH1-202ENST00000381753 FAM214AQ32MH5 1076 aa9.2□□□□□ -0.94
LIMCH1-202ENST00000381753 ZNF470Q6ECI4 717 aa9.2□□□□□ -0.94
LIMCH1-202ENST00000381753 FSTL5Q8N475 847 aaPredicted RBP9.2□□□□□ -0.94
LIMCH1-202ENST00000381753 DEFB124Q8NES8 71 aa9.2□□□□□ -0.94
LIMCH1-202ENST00000381753 TOR1AIP2Q8NFQ8 470 aa9.2□□□□□ -0.94
LIMCH1-202ENST00000381753 DGAT2Q96PD7 388 aa9.2□□□□□ -0.94
LIMCH1-202ENST00000381753 RASSF4Q9H2L5 321 aa9.2□□□□□ -0.94
LIMCH1-202ENST00000381753 CDYLQ9Y232 598 aa9.2□□□□□ -0.94
LIMCH1-202ENST00000381753 OR5K4A6NMS3 321 aa9.2□□□□□ -0.94
LIMCH1-202ENST00000381753 CD3EAPO15446 510 aaKnown RBP9.2□□□□□ -0.94
LIMCH1-202ENST00000381753 PEX1O43933 1283 aa9.2□□□□□ -0.94
LIMCH1-202ENST00000381753 SNX4O95219 450 aa9.2□□□□□ -0.94
LIMCH1-202ENST00000381753 VAV1P15498 845 aa9.2□□□□□ -0.94
LIMCH1-202ENST00000381753 CEBPBP17676 345 aa9.2□□□□□ -0.94
LIMCH1-202ENST00000381753 CDH2P19022 906 aaPredicted RBP9.2□□□□□ -0.94
LIMCH1-202ENST00000381753 COMTP21964 271 aa9.2□□□□□ -0.94
LIMCH1-202ENST00000381753 NR2C2P49116 596 aa9.2□□□□□ -0.94
LIMCH1-202ENST00000381753 TFF2Q03403 129 aa9.2□□□□□ -0.94
LIMCH1-202ENST00000381753 SEC23AQ15436 765 aa9.2□□□□□ -0.94
LIMCH1-202ENST00000381753 MAPKAPK3Q16644 382 aa9.2□□□□□ -0.94
LIMCH1-202ENST00000381753 RBMS3Q6XE24 437 aaKnown RBP9.2□□□□□ -0.94
LIMCH1-202ENST00000381753 SYDE1Q6ZW31 735 aaPredicted RBP9.2□□□□□ -0.94
LIMCH1-202ENST00000381753 IKBIPQ70UQ0 350 aa9.2□□□□□ -0.94
LIMCH1-202ENST00000381753 SLC47A2Q86VL8 602 aa9.2□□□□□ -0.94
LIMCH1-202ENST00000381753 STARD8Q92502 1023 aa9.2□□□□□ -0.94
LIMCH1-202ENST00000381753 ARRDC3Q96B67 414 aa9.2□□□□□ -0.94
LIMCH1-202ENST00000381753 LRMDAQ9H2I8 198 aa9.2□□□□□ -0.94
LIMCH1-202ENST00000381753 RAD21L1Q9H4I0 556 aa9.2□□□□□ -0.94
LIMCH1-202ENST00000381753 KCNK6Q9Y257 313 aa9.2□□□□□ -0.94
LIMCH1-202ENST00000381753 TRIM64A6NGJ6 449 aa9.2□□□□□ -0.94
LIMCH1-202ENST00000381753 E9PBE3 544 aa9.2□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms