RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 PRAMEF10O60809 474 aa14□□□□□ -0.17
CCDC88A-201ENST00000263630 TUBA1BP68363 451 aa14□□□□□ -0.17
CCDC88A-201ENST00000263630 MFSD10Q14728 455 aa14□□□□□ -0.17
CCDC88A-201ENST00000263630 ZNF697Q5TEC3 545 aa14□□□□□ -0.17
CCDC88A-201ENST00000263630 TUBA1AQ71U36 451 aa14□□□□□ -0.17
CCDC88A-201ENST00000263630 SYNE4Q8N205 404 aa14□□□□□ -0.17
CCDC88A-201ENST00000263630 CXorf40AQ8TE69 158 aa14□□□□□ -0.17
CCDC88A-201ENST00000263630 RTKNQ9BST9 563 aa14□□□□□ -0.17
CCDC88A-201ENST00000263630 NAALADL1Q9UQQ1 740 aa14□□□□□ -0.17
CCDC88A-201ENST00000263630 PRMT5O14744 637 aaPredicted RBP14□□□□□ -0.17
CCDC88A-201ENST00000263630 HTR1BP28222 390 aa14□□□□□ -0.17
CCDC88A-201ENST00000263630 FCGRTP55899 365 aa14□□□□□ -0.17
CCDC88A-201ENST00000263630 ZC2HC1CQ53FD0 456 aaPredicted RBP14□□□□□ -0.17
CCDC88A-201ENST00000263630 SLITRK4Q8IW52 837 aa14□□□□□ -0.17
CCDC88A-201ENST00000263630 ZNF433Q8N7K0 673 aaPredicted RBP14□□□□□ -0.17
CCDC88A-201ENST00000263630 MKL1Q969V6 931 aa14□□□□□ -0.17
CCDC88A-201ENST00000263630 ACSF2Q96CM8 615 aaPredicted RBP14□□□□□ -0.17
CCDC88A-201ENST00000263630 CPNE2Q96FN4 548 aaPredicted RBP14□□□□□ -0.17
CCDC88A-201ENST00000263630 SMARCD1Q96GM5 515 aa14□□□□□ -0.17
CCDC88A-201ENST00000263630 SLC9A3R1O14745 358 aaPredicted RBP14□□□□□ -0.17
CCDC88A-201ENST00000263630 LARGE1O95461 756 aa14□□□□□ -0.17
CCDC88A-201ENST00000263630 MMP10P09238 476 aa14□□□□□ -0.17
CCDC88A-201ENST00000263630 SAGP10523 405 aaPredicted RBP14□□□□□ -0.17
CCDC88A-201ENST00000263630 RGL4Q8IZJ4 473 aa14□□□□□ -0.17
CCDC88A-201ENST00000263630 RC3H2Q9HBD1 1191 aaKnown RBP14□□□□□ -0.17
CCDC88A-201ENST00000263630 ARHGEF4Q9NR80 690 aa14□□□□□ -0.17
CCDC88A-201ENST00000263630 DNAJC11Q9NVH1 559 aa14□□□□□ -0.17
CCDC88A-201ENST00000263630 MAN2B2Q9Y2E5 1009 aa14□□□□□ -0.17
CCDC88A-201ENST00000263630 SUPT20HL2P0C7V6 817 aa14□□□□□ -0.17
CCDC88A-201ENST00000263630 PPM1AP35813 382 aa14□□□□□ -0.17
CCDC88A-201ENST00000263630 AP5B1Q2VPB7 878 aa14□□□□□ -0.17
CCDC88A-201ENST00000263630 METTL16Q86W50 562 aaKnown RBP14□□□□□ -0.17
CCDC88A-201ENST00000263630 ATXN10Q9UBB4 475 aa14□□□□□ -0.17
CCDC88A-201ENST00000263630 ASTN2O75129 1339 aaPredicted RBP14□□□□□ -0.17
CCDC88A-201ENST00000263630 TLX3O43711 291 aaPredicted RBP14□□□□□ -0.17
CCDC88A-201ENST00000263630 SCGB2A1O75556 95 aa14□□□□□ -0.17
CCDC88A-201ENST00000263630 MT-CO1P00395 513 aa14□□□□□ -0.17
CCDC88A-201ENST00000263630 NTRK1P04629 796 aa14□□□□□ -0.17
CCDC88A-201ENST00000263630 FDPSP14324 419 aaKnown RBP14□□□□□ -0.17
CCDC88A-201ENST00000263630 ITPKBP27987 946 aa14□□□□□ -0.17
CCDC88A-201ENST00000263630 MAPK8P45983 427 aa14□□□□□ -0.17
CCDC88A-201ENST00000263630 NPTX2P47972 431 aa14□□□□□ -0.17
CCDC88A-201ENST00000263630 SPDYCQ5MJ68 293 aa14□□□□□ -0.17
CCDC88A-201ENST00000263630 EFCAB3Q8N7B9 438 aa14□□□□□ -0.17
CCDC88A-201ENST00000263630 ETNPPLQ8TBG4 499 aa14□□□□□ -0.17
CCDC88A-201ENST00000263630 APOL2Q9BQE5 337 aa14□□□□□ -0.17
CCDC88A-201ENST00000263630 IKZF2Q9UKS7 526 aa14□□□□□ -0.17
CCDC88A-201ENST00000263630 VSTM5A8MXK1 200 aa13.99□□□□□ -0.17
CCDC88A-201ENST00000263630 HOXC6P09630 235 aa13.99□□□□□ -0.17
CCDC88A-201ENST00000263630 SLC10A7Q0GE19 358 aa13.99□□□□□ -0.17
CCDC88A-201ENST00000263630 PFKFB4Q16877 469 aa13.99□□□□□ -0.17
CCDC88A-201ENST00000263630 ARRDC4Q8NCT1 418 aa13.99□□□□□ -0.17
CCDC88A-201ENST00000263630 OR4A15Q8NGL6 344 aa13.99□□□□□ -0.17
CCDC88A-201ENST00000263630 MXRA8Q9BRK3 442 aa13.99□□□□□ -0.17
CCDC88A-201ENST00000263630 SHANK2Q9UPX8 1470 aa13.99□□□□□ -0.17
CCDC88A-201ENST00000263630 WDR27A2RRH5 827 aa13.99□□□□□ -0.17
CCDC88A-201ENST00000263630 UBR7Q8N806 425 aa13.99□□□□□ -0.17
CCDC88A-201ENST00000263630 SPERTQ8NA61 448 aa13.99□□□□□ -0.17
CCDC88A-201ENST00000263630 C1orf216Q8TAB5 229 aa13.99□□□□□ -0.17
CCDC88A-201ENST00000263630 DNAJB14Q8TBM8 379 aa13.99□□□□□ -0.17
CCDC88A-201ENST00000263630 THRSPQ92748 146 aa13.99□□□□□ -0.17
CCDC88A-201ENST00000263630 FXR2P51116 673 aaKnown RBP eCLIP13.99□□□□□ -0.171e-7■■■□□ 17
CCDC88A-201ENST00000263630 RBM44Q6ZP01 1051 aaKnown RBP13.99□□□□□ -0.17
CCDC88A-201ENST00000263630 PMM1Q92871 262 aa13.99□□□□□ -0.17
CCDC88A-201ENST00000263630 DIRAS2Q96HU8 199 aa13.99□□□□□ -0.17
CCDC88A-201ENST00000263630 POLR1EQ9GZS1 481 aaKnown RBP13.99□□□□□ -0.17
CCDC88A-201ENST00000263630 MTRRQ9UBK8 725 aa13.99□□□□□ -0.17
CCDC88A-201ENST00000263630 DHX15O43143 795 aaKnown RBP13.99□□□□□ -0.17
CCDC88A-201ENST00000263630 GYPCP04921 128 aa13.99□□□□□ -0.17
CCDC88A-201ENST00000263630 ALDH2P05091 517 aa13.99□□□□□ -0.17
CCDC88A-201ENST00000263630 KLRC1P26715 233 aa13.99□□□□□ -0.17
CCDC88A-201ENST00000263630 ZIK1Q3SY52 487 aaPredicted RBP13.99□□□□□ -0.17
CCDC88A-201ENST00000263630 PNLDC1Q8NA58 520 aaKnown RBP13.99□□□□□ -0.17
CCDC88A-201ENST00000263630 ZNF75CPQ92670 426 aaPredicted RBP13.99□□□□□ -0.17
CCDC88A-201ENST00000263630 MYH3P11055 1940 aa13.99□□□□□ -0.17
CCDC88A-201ENST00000263630 FMO4P31512 558 aa13.99□□□□□ -0.17
CCDC88A-201ENST00000263630 PRAMEF17Q5VTA0 474 aa13.99□□□□□ -0.17
CCDC88A-201ENST00000263630 DOK6Q6PKX4 331 aa13.99□□□□□ -0.17
CCDC88A-201ENST00000263630 HTRA1Q92743 480 aa13.99□□□□□ -0.17
CCDC88A-201ENST00000263630 TMCO6Q96DC7 493 aa13.99□□□□□ -0.17
CCDC88A-201ENST00000263630 TMEM176AQ96HP8 235 aa13.99□□□□□ -0.17
CCDC88A-201ENST00000263630 RBM4BQ9BQ04 359 aaKnown RBP13.99□□□□□ -0.17
CCDC88A-201ENST00000263630 RBM4Q9BWF3 364 aaKnown RBP13.99□□□□□ -0.17
CCDC88A-201ENST00000263630 ABI3Q9P2A4 366 aa13.99□□□□□ -0.17
CCDC88A-201ENST00000263630 IFT80Q9P2H3 777 aaPredicted RBP13.99□□□□□ -0.17
CCDC88A-201ENST00000263630 CPDO75976 1380 aa13.99□□□□□ -0.17
CCDC88A-201ENST00000263630 DHRS12A0PJE2 317 aa13.99□□□□□ -0.17
CCDC88A-201ENST00000263630 C5orf51A6NDU8 294 aa13.99□□□□□ -0.17
CCDC88A-201ENST00000263630 CETPP11597 493 aa13.99□□□□□ -0.17
CCDC88A-201ENST00000263630 AFF1P51825 1210 aaKnown RBP13.99□□□□□ -0.17
CCDC88A-201ENST00000263630 LARS2Q15031 903 aaKnown RBP13.99□□□□□ -0.17
CCDC88A-201ENST00000263630 MAPK14Q16539 360 aa13.99□□□□□ -0.17
CCDC88A-201ENST00000263630 CXorf57Q6NSI4 855 aaKnown RBP13.99□□□□□ -0.17
CCDC88A-201ENST00000263630 OTUB2Q96DC9 234 aa13.99□□□□□ -0.17
CCDC88A-201ENST00000263630 PCDH18Q9HCL0 1135 aa13.99□□□□□ -0.17
CCDC88A-201ENST00000263630 MKLN1Q9UL63 735 aa13.99□□□□□ -0.17
CCDC88A-201ENST00000263630 CPSF1Q10570 1443 aaKnown RBP13.99□□□□□ -0.17
CCDC88A-201ENST00000263630 PTPRKQ15262 1439 aa13.99□□□□□ -0.17
CCDC88A-201ENST00000263630 CROCC2H7BZ55 1655 aa13.99□□□□□ -0.17
CCDC88A-201ENST00000263630 IRF8Q02556 426 aa13.99□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 106.1 ms