RNA–Protein interactions for RNA: YCR093W

CDC39, Transcript of Component of the CCR4-NOT1 core complex, yeastyeast

Gene CDC39, Length 6,327 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
CDC39YCR093W CST6P40535 587 aa1.59□□□□□ -2.16
CDC39YCR093W PBP1P53297 722 aaKnown RBP1.59□□□□□ -2.16
CDC39YCR093W LCB5Q06147 687 aaKnown RBP1.59□□□□□ -2.16
CDC39YCR093W YLR125WQ12138 136 aa1.59□□□□□ -2.16
CDC39YCR093W YGR161W-CQ3E744 92 aa1.59□□□□□ -2.16
CDC39YCR093W NHA1Q99271 985 aa1.59□□□□□ -2.16
CDC39YCR093W RPC31P17890 251 aa1.58□□□□□ -2.16
CDC39YCR093W BOL3P39724 118 aa1.58□□□□□ -2.16
CDC39YCR093W RPS26AP39938 119 aaKnown RBP1.58□□□□□ -2.16
CDC39YCR093W RPS26BP39939 119 aaKnown RBP1.58□□□□□ -2.16
CDC39YCR093W YPL260WQ08977 551 aa1.58□□□□□ -2.16
CDC39YCR093W FLP1P03870 423 aa1.58□□□□□ -2.16
CDC39YCR093W STI1P15705 589 aaKnown RBP RIP-Chip data1.58□□□□□ -2.16not detected
CDC39YCR093W YKL107WP34251 309 aa1.58□□□□□ -2.16
CDC39YCR093W HLJ1P48353 224 aa1.58□□□□□ -2.16
CDC39YCR093W SKP1P52286 194 aa1.58□□□□□ -2.16
CDC39YCR093W TAN1P53072 289 aaPredicted RBP1.58□□□□□ -2.16
CDC39YCR093W MET32Q12041 191 aa1.58□□□□□ -2.16
CDC39YCR093W RPA190P10964 1664 aaKnown RBP1.58□□□□□ -2.16
CDC39YCR093W KIN2P13186 1147 aaKnown RBP1.58□□□□□ -2.16
CDC39YCR093W ATG19P35193 415 aa1.58□□□□□ -2.16
CDC39YCR093W TAT1P38085 619 aa1.58□□□□□ -2.16
CDC39YCR093W ROG3P43602 733 aa1.58□□□□□ -2.16
CDC39YCR093W PMT3P47190 753 aa1.58□□□□□ -2.16
CDC39YCR093W YPR015CQ12531 247 aa1.58□□□□□ -2.16
CDC39YCR093W NFS1P25374 497 aa1.58□□□□□ -2.16
CDC39YCR093W PYC2P32327 1180 aaKnown RBP1.58□□□□□ -2.16
CDC39YCR093W ADD66P36040 267 aa1.58□□□□□ -2.16
CDC39YCR093W PAM1P37304 830 aaKnown RBP1.58□□□□□ -2.16
CDC39YCR093W MRPL16P38064 232 aa1.58□□□□□ -2.16
CDC39YCR093W VAC8P39968 578 aa1.58□□□□□ -2.16
CDC39YCR093W YJR124CP47159 448 aa1.58□□□□□ -2.16
CDC39YCR093W APC11Q12157 165 aa1.58□□□□□ -2.16
CDC39YCR093W CDC25P04821 1589 aa1.58□□□□□ -2.16
CDC39YCR093W PUF4P25339 888 aaKnown RBP RIP-Chip data1.58□□□□□ -2.16 RIP-Chip
CDC39YCR093W PBY1P38254 753 aa1.58□□□□□ -2.16
CDC39YCR093W BOI2P39969 1040 aa1.58□□□□□ -2.16
CDC39YCR093W YIL165CP40446 119 aa1.58□□□□□ -2.16
CDC39YCR093W YJL181WP46987 611 aa1.58□□□□□ -2.16
CDC39YCR093W TIM54P47045 478 aa1.58□□□□□ -2.16
CDC39YCR093W CAB1Q04430 367 aa1.58□□□□□ -2.16
CDC39YCR093W YDR461C-AQ2V2P7 80 aa1.58□□□□□ -2.16
CDC39YCR093W ESC1Q03661 1658 aaKnown RBP1.58□□□□□ -2.16
CDC39YCR093W RFA1P22336 621 aaKnown RBP1.57□□□□□ -2.16
CDC39YCR093W ARE1P25628 610 aa1.57□□□□□ -2.16
CDC39YCR093W KNS1P32350 737 aaPredicted RBP1.57□□□□□ -2.16
CDC39YCR093W YKL091CP33324 310 aaKnown RBP1.57□□□□□ -2.16
CDC39YCR093W YAR028WP39548 234 aa1.57□□□□□ -2.16
CDC39YCR093W YPQ2Q06328 317 aa1.57□□□□□ -2.16
CDC39YCR093W DNF2Q12675 1612 aa1.57□□□□□ -2.16
CDC39YCR093W AI1P03875 834 aa1.57□□□□□ -2.16
CDC39YCR093W PDC6P26263 563 aaKnown RBP1.57□□□□□ -2.16
CDC39YCR093W SFA1P32771 386 aa1.57□□□□□ -2.16
CDC39YCR093W KAE1P36132 386 aa1.57□□□□□ -2.16
CDC39YCR093W YDR444WQ04093 687 aa1.57□□□□□ -2.16
CDC39YCR093W MRL1Q06815 381 aa1.57□□□□□ -2.16
CDC39YCR093W PHM7Q12252 991 aa1.57□□□□□ -2.16
CDC39YCR093W TOM70P07213 617 aaKnown RBP1.57□□□□□ -2.16
CDC39YCR093W AAR2P32357 355 aaPredicted RBP1.57□□□□□ -2.16
CDC39YCR093W TPS3P38426 1054 aaKnown RBP1.57□□□□□ -2.16
CDC39YCR093W PUS2P53167 370 aa1.57□□□□□ -2.16
CDC39YCR093W DOS2P54858 310 aa1.57□□□□□ -2.16
CDC39YCR093W YIG1Q08956 461 aa1.57□□□□□ -2.16
CDC39YCR093W YOR223WQ12015 292 aa1.57□□□□□ -2.16
CDC39YCR093W YOR093CQ12275 1648 aa1.57□□□□□ -2.16
CDC39YCR093W MET6P05694 767 aaKnown RBP1.57□□□□□ -2.16
CDC39YCR093W PRP40P33203 583 aaKnown RBP1.57□□□□□ -2.16
CDC39YCR093W MCM7P38132 845 aa1.57□□□□□ -2.16
CDC39YCR093W MDJ2P42834 146 aa1.57□□□□□ -2.16
CDC39YCR093W YJR098CP47139 656 aa1.57□□□□□ -2.16
CDC39YCR093W CCM1P48237 864 aaPredicted RBP1.57□□□□□ -2.16
CDC39YCR093W PSP2P50109 593 aaKnown RBP1.57□□□□□ -2.16
CDC39YCR093W MON1P53129 644 aa1.57□□□□□ -2.16
CDC39YCR093W NOG1Q02892 647 aaKnown RBP1.57□□□□□ -2.16
CDC39YCR093W YPR196WQ06595 470 aa1.57□□□□□ -2.16
CDC39YCR093W YKR075CP36155 307 aa1.57□□□□□ -2.16
CDC39YCR093W DAM1P53267 343 aa1.57□□□□□ -2.16
CDC39YCR093W SHE9Q04172 456 aa1.57□□□□□ -2.16
CDC39YCR093W COG8Q04632 607 aa1.57□□□□□ -2.16
CDC39YCR093W HSL1P34244 1518 aa1.57□□□□□ -2.16
CDC39YCR093W REI1P38344 393 aaPredicted RBP1.56□□□□□ -2.16
CDC39YCR093W RPN10P38886 268 aaKnown RBP1.56□□□□□ -2.16
CDC39YCR093W INP51P40559 946 aaKnown RBP1.56□□□□□ -2.16
CDC39YCR093W CUZ1P53899 274 aa1.56□□□□□ -2.16
CDC39YCR093W MSH6Q03834 1242 aa1.56□□□□□ -2.16
CDC39YCR093W VMS1Q04311 632 aaKnown RBP1.56□□□□□ -2.16
CDC39YCR093W TDA5Q06417 326 aaKnown RBP1.56□□□□□ -2.16
CDC39YCR093W PUS1Q12211 544 aaKnown RBP1.56□□□□□ -2.16
CDC39YCR093W SYP1P25623 870 aaKnown RBP1.56□□□□□ -2.16
CDC39YCR093W SMY2P32909 740 aaKnown RBP1.56□□□□□ -2.16
CDC39YCR093W MDL2P33311 773 aa1.56□□□□□ -2.16
CDC39YCR093W CIT3P43635 486 aa1.56□□□□□ -2.16
CDC39YCR093W NUT1P53114 1132 aa1.56□□□□□ -2.16
CDC39YCR093W TYW3P53177 273 aa1.56□□□□□ -2.16
CDC39YCR093W BIO5P53744 561 aaKnown RBP1.56□□□□□ -2.16
CDC39YCR093W TY1A-MR1Q04215 440 aa1.56□□□□□ -2.16
CDC39YCR093W EAF1Q06337 982 aa1.56□□□□□ -2.16
CDC39YCR093W GIC2Q06648 383 aa1.56□□□□□ -2.16
CDC39YCR093W CDC53Q12018 815 aaKnown RBP1.56□□□□□ -2.16
CDC39YCR093W DBP5P20449 482 aaKnown RBP1.56□□□□□ -2.16
Retrieved 100 of 5,963 RNA–protein pairs in 25.2 ms