RNA–Protein interactions for RNA: ENST00000637107.1

CLN3-256, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,946 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-256ENST00000637107 LTN1O94822 1766 aa23.14■■□□□ 1.3
CLN3-256ENST00000637107 NPC1L1Q9UHC9 1359 aa23.14■■□□□ 1.29
CLN3-256ENST00000637107 AFF2P51816 1311 aa23.13■■□□□ 1.29
CLN3-256ENST00000637107 COL14A1Q05707 1796 aaKnown RBP23.12■■□□□ 1.29
CLN3-256ENST00000637107 PLCH1Q4KWH8 1693 aa23.12■■□□□ 1.29
CLN3-256ENST00000637107 FNBP4Q8N3X1 1017 aaPredicted RBP23.12■■□□□ 1.29
CLN3-256ENST00000637107 MAP3K19Q56UN5 1328 aa23.11■■□□□ 1.29
CLN3-256ENST00000637107 BTG4Q9NY30 223 aa23.11■■□□□ 1.29
CLN3-256ENST00000637107 AXIN2Q9Y2T1 843 aa23.11■■□□□ 1.29
CLN3-256ENST00000637107 SLIT2O94813 1529 aa23.11■■□□□ 1.29
CLN3-256ENST00000637107 MAP2P11137 1827 aaKnown RBP23.1■■□□□ 1.29
CLN3-256ENST00000637107 COL18A1P39060 1754 aa23.1■■□□□ 1.29
CLN3-256ENST00000637107 RGS17Q9UGC6 210 aaPredicted RBP23.1■■□□□ 1.29
CLN3-256ENST00000637107 LMO7Q8WWI1 1683 aa23.09■■□□□ 1.29
CLN3-256ENST00000637107 BCL9LQ86UU0 1499 aa23.09■■□□□ 1.29
CLN3-256ENST00000637107 PHF23Q9BUL5 403 aaPredicted RBP23.09■■□□□ 1.29
CLN3-256ENST00000637107 AATKQ6ZMQ8 1374 aa23.09■■□□□ 1.29
CLN3-256ENST00000637107 CAMTA1Q9Y6Y1 1673 aa23.09■■□□□ 1.29
CLN3-256ENST00000637107 RGPD5Q99666 1765 aa23.08■■□□□ 1.29
CLN3-256ENST00000637107 USP21Q9UK80 565 aa23.08■■□□□ 1.29
CLN3-256ENST00000637107 EMILIN1Q9Y6C2 1016 aa23.08■■□□□ 1.29
CLN3-256ENST00000637107 NWD2Q9ULI1 1742 aa23.06■■□□□ 1.28
CLN3-256ENST00000637107 POLKQ9UBT6 870 aa23.06■■□□□ 1.28
CLN3-256ENST00000637107 PPM1GO15355 546 aaPredicted RBP23.06■■□□□ 1.28
CLN3-256ENST00000637107 AMPHP49418 695 aa23.06■■□□□ 1.28
CLN3-256ENST00000637107 PEAK1Q9H792 1746 aa23.05■■□□□ 1.28
CLN3-256ENST00000637107 UNC5CLQ8IV45 518 aa23.05■■□□□ 1.28
CLN3-256ENST00000637107 NRAPQ86VF7 1730 aa23.04■■□□□ 1.28
CLN3-256ENST00000637107 HOXC9P31274 260 aa23.04■■□□□ 1.28
CLN3-256ENST00000637107 IP6K1Q92551 441 aa23.04■■□□□ 1.28
CLN3-256ENST00000637107 STRN4Q9NRL3 753 aa23.04■■□□□ 1.28
CLN3-256ENST00000637107 COL5A2P05997 1499 aaPredicted RBP23.02■■□□□ 1.28
CLN3-256ENST00000637107 SMG6Q86US8 1419 aaKnown RBP23.02■■□□□ 1.28
CLN3-256ENST00000637107 ZNF772Q68DY9 489 aaPredicted RBP23.02■■□□□ 1.28
CLN3-256ENST00000637107 EVA1CP58658 441 aa23.01■■□□□ 1.27
CLN3-256ENST00000637107 HSP90AB2PQ58FF8 381 aa23.01■■□□□ 1.27
CLN3-256ENST00000637107 TNKS1BP1Q9C0C2 1729 aaKnown RBP23.01■■□□□ 1.27
CLN3-256ENST00000637107 ABCC6O95255 1503 aa23■■□□□ 1.27
CLN3-256ENST00000637107 QTRT2Q9H974 415 aaKnown RBP23■■□□□ 1.27
CLN3-256ENST00000637107 RTL1A6NKG5 1358 aa22.99■■□□□ 1.27
CLN3-256ENST00000637107 FLT4P35916 1363 aa22.99■■□□□ 1.27
CLN3-256ENST00000637107 LARP1Q6PKG0 1096 aaKnown RBP22.99■■□□□ 1.27
CLN3-256ENST00000637107 POTEAQ6S8J7 498 aa22.99■■□□□ 1.27
CLN3-256ENST00000637107 MTHFSP49914 203 aa22.98■■□□□ 1.27
CLN3-256ENST00000637107 LTV1Q96GA3 475 aaPredicted RBP22.98■■□□□ 1.27
CLN3-256ENST00000637107 BLMP54132 1417 aaPredicted RBP22.98■■□□□ 1.27
CLN3-256ENST00000637107 ANKRD24Q8TF21 1146 aa22.98■■□□□ 1.27
CLN3-256ENST00000637107 ERBB3P21860 1342 aa22.98■■□□□ 1.27
CLN3-256ENST00000637107 KIF24Q5T7B8 1368 aa22.98■■□□□ 1.27
CLN3-256ENST00000637107 ATRNO75882 1429 aa22.97■■□□□ 1.27
CLN3-256ENST00000637107 TRPC5Q9UL62 973 aaPredicted RBP22.97■■□□□ 1.27
CLN3-256ENST00000637107 PPP2R1AP30153 589 aa22.96■■□□□ 1.27
CLN3-256ENST00000637107 IRX6P78412 446 aaPredicted RBP22.96■■□□□ 1.27
CLN3-256ENST00000637107 CCDC9Q9Y3X0 531 aaKnown RBP22.96■■□□□ 1.27
CLN3-256ENST00000637107 VPS72Q15906 364 aa22.96■■□□□ 1.27
CLN3-256ENST00000637107 NUDCQ9Y266 331 aa22.96■■□□□ 1.27
CLN3-256ENST00000637107 INSRP06213 1382 aa22.95■■□□□ 1.26
CLN3-256ENST00000637107 WDR17Q8IZU2 1322 aa22.95■■□□□ 1.26
CLN3-256ENST00000637107 CSB-PGBD3P0DP91 1061 aa22.95■■□□□ 1.26
CLN3-256ENST00000637107 USP35Q9P2H5 1018 aa22.94■■□□□ 1.26
CLN3-256ENST00000637107 ERICH6BQ5W0A0 696 aa22.94■■□□□ 1.26
CLN3-256ENST00000637107 TOM1L2Q6ZVM7 507 aa22.93■■□□□ 1.26
CLN3-256ENST00000637107 GJD4Q96KN9 370 aaPredicted RBP22.93■■□□□ 1.26
CLN3-256ENST00000637107 CDK12Q9NYV4 1490 aaPredicted RBP22.92■■□□□ 1.26
CLN3-256ENST00000637107 SENP3-EIF4A1A0A087X0R7 540 aa22.92■■□□□ 1.26
CLN3-256ENST00000637107 SPATA31A5Q5VU36 1347 aa22.92■■□□□ 1.26
CLN3-256ENST00000637107 SPATA31A7Q8IWB4 1347 aa22.92■■□□□ 1.26
CLN3-256ENST00000637107 RGPD2P0DJD1 1756 aa22.91■■□□□ 1.26
CLN3-256ENST00000637107 CRB1P82279 1406 aa22.91■■□□□ 1.26
CLN3-256ENST00000637107 SPATA31A1Q5TZJ5 1347 aa22.91■■□□□ 1.26
CLN3-256ENST00000637107 GLI3P10071 1580 aa22.91■■□□□ 1.26
CLN3-256ENST00000637107 EIF4A2Q14240 407 aaKnown RBP22.9■■□□□ 1.26
CLN3-256ENST00000637107 NLRP2Q9NX02 1062 aa22.9■■□□□ 1.26
CLN3-256ENST00000637107 RXRBP28702 533 aa22.88■■□□□ 1.25
CLN3-256ENST00000637107 RBM6P78332 1123 aaKnown RBP22.88■■□□□ 1.25
CLN3-256ENST00000637107 NBPF6Q5VWK0 638 aa22.88■■□□□ 1.25
CLN3-256ENST00000637107 NBPF4Q96M43 638 aa22.88■■□□□ 1.25
CLN3-256ENST00000637107 CARD10Q9BWT7 1032 aa22.86■■□□□ 1.25
CLN3-256ENST00000637107 FAM208AQ9UK61 1670 aaKnown RBP22.86■■□□□ 1.25
CLN3-256ENST00000637107 FAM98CQ17RN3 349 aaKnown RBP22.86■■□□□ 1.25
CLN3-256ENST00000637107 TCP11L2Q8N4U5 519 aa22.85■■□□□ 1.25
CLN3-256ENST00000637107 USHBP1Q8N6Y0 703 aa22.85■■□□□ 1.25
CLN3-256ENST00000637107 TSHZ2Q9NRE2 1034 aa22.85■■□□□ 1.25
CLN3-256ENST00000637107 IL13P35225 146 aa22.84■■□□□ 1.25
CLN3-256ENST00000637107 COL3A1P02461 1466 aaPredicted RBP22.84■■□□□ 1.25
CLN3-256ENST00000637107 EYA1Q99502 592 aa22.84■■□□□ 1.25
CLN3-256ENST00000637107 PPP4R2Q9NY27 417 aa22.82■■□□□ 1.24
CLN3-256ENST00000637107 RNF123Q5XPI4 1314 aa22.82■■□□□ 1.24
CLN3-256ENST00000637107 DIAPH1O60610 1272 aaKnown RBP22.82■■□□□ 1.24
CLN3-256ENST00000637107 THRAP3Q9Y2W1 955 aaKnown RBP22.82■■□□□ 1.24
CLN3-256ENST00000637107 CFAP53Q96M91 514 aa22.81■■□□□ 1.24
CLN3-256ENST00000637107 BARGINQ6ZT62 677 aa22.8■■□□□ 1.24
CLN3-256ENST00000637107 ONECUT3O60422 494 aaPredicted RBP22.8■■□□□ 1.24
CLN3-256ENST00000637107 PDE3BQ13370 1112 aa22.8■■□□□ 1.24
CLN3-256ENST00000637107 A0A0G2JS52 829 aa22.78■■□□□ 1.24
CLN3-256ENST00000637107 MYT1Q01538 1121 aa22.78■■□□□ 1.24
CLN3-256ENST00000637107 RGS12O14924 1447 aa22.78■■□□□ 1.24
CLN3-256ENST00000637107 IGSF1Q8N6C5 1336 aa22.78■■□□□ 1.24
CLN3-256ENST00000637107 SALL2Q9Y467 1007 aaPredicted RBP22.78■■□□□ 1.24
CLN3-256ENST00000637107 WNK3Q9BYP7 1800 aa22.78■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 135.5 ms