RNA–Protein interactions for RNA: ENST00000623461.3

VCL-206, Transcript of vinculin, humanhuman

TSL 1 (best)

Gene VCL, Length 7,995 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-206ENST00000623461 ZNHIT6Q9NWK9 470 aaKnown RBP10.53□□□□□ -0.72
VCL-206ENST00000623461 TERF1P54274 439 aa10.53□□□□□ -0.72
VCL-206ENST00000623461 NBPF8Q3BBV2 869 aa10.53□□□□□ -0.72
VCL-206ENST00000623461 RALYLQ86SE5 291 aaKnown RBP10.53□□□□□ -0.72
VCL-206ENST00000623461 KIAA1107Q9UPP5 1409 aa10.53□□□□□ -0.72
VCL-206ENST00000623461 TDRD9Q8NDG6 1382 aaKnown RBP10.53□□□□□ -0.72
VCL-206ENST00000623461 TTLL5Q6EMB2 1281 aa10.53□□□□□ -0.72
VCL-206ENST00000623461 UPF3BQ9BZI7 483 aaKnown RBP10.53□□□□□ -0.72
VCL-206ENST00000623461 CTTNBP2Q8WZ74 1663 aa10.53□□□□□ -0.72
VCL-206ENST00000623461 ANKRD50Q9ULJ7 1429 aa10.53□□□□□ -0.72
VCL-206ENST00000623461 XBP1P17861 261 aa10.53□□□□□ -0.72
VCL-206ENST00000623461 AEBP2Q6ZN18 517 aaPredicted RBP10.53□□□□□ -0.72
VCL-206ENST00000623461 CLASRPQ8N2M8 674 aaKnown RBP10.53□□□□□ -0.72
VCL-206ENST00000623461 SSFA2P28290 1259 aa10.53□□□□□ -0.72
VCL-206ENST00000623461 BRMS1Q9HCU9 246 aa10.53□□□□□ -0.72
VCL-206ENST00000623461 FOSBP53539 338 aa10.52□□□□□ -0.72
VCL-206ENST00000623461 MICALCLQ6ZW33 695 aa10.52□□□□□ -0.72
VCL-206ENST00000623461 ZKSCAN5Q9Y2L8 839 aa10.52□□□□□ -0.72
VCL-206ENST00000623461 GNAI2P04899 355 aa10.52□□□□□ -0.72
VCL-206ENST00000623461 LRSAM1Q6UWE0 723 aa10.52□□□□□ -0.72
VCL-206ENST00000623461 ERC1Q8IUD2 1116 aa10.52□□□□□ -0.72
VCL-206ENST00000623461 TIAM1Q13009 1591 aa10.52□□□□□ -0.73
VCL-206ENST00000623461 MTHFSP49914 203 aa10.52□□□□□ -0.73
VCL-206ENST00000623461 CTR9Q6PD62 1173 aa10.52□□□□□ -0.73
VCL-206ENST00000623461 MAGEC2Q9UBF1 373 aaPredicted RBP10.52□□□□□ -0.73
VCL-206ENST00000623461 LRPPRCP42704 1394 aaKnown RBP10.52□□□□□ -0.73
VCL-206ENST00000623461 BAG4O95429 457 aaKnown RBP10.52□□□□□ -0.73
VCL-206ENST00000623461 GSDMDP57764 484 aa10.52□□□□□ -0.73
VCL-206ENST00000623461 MAPK8IP2Q13387 824 aaPredicted RBP10.52□□□□□ -0.73
VCL-206ENST00000623461 LUC7LQ9NQ29 371 aaKnown RBP10.52□□□□□ -0.73
VCL-206ENST00000623461 GTF2A1P52655 376 aaPredicted RBP10.52□□□□□ -0.73
VCL-206ENST00000623461 TSPYL4Q9UJ04 414 aa10.52□□□□□ -0.73
VCL-206ENST00000623461 SPDYE4A6NLX3 237 aa10.51□□□□□ -0.73
VCL-206ENST00000623461 KIF20AO95235 890 aa10.51□□□□□ -0.73
VCL-206ENST00000623461 CASQ1P31415 396 aa10.51□□□□□ -0.73
VCL-206ENST00000623461 GTF2F1P35269 517 aaKnown RBP eCLIP10.51□□□□□ -0.738e-7■■■■■ 61.7
VCL-206ENST00000623461 RBM25P49756 843 aaKnown RBP10.51□□□□□ -0.73
VCL-206ENST00000623461 IRX3P78415 501 aaPredicted RBP10.51□□□□□ -0.73
VCL-206ENST00000623461 ZSCAN23Q3MJ62 389 aa10.51□□□□□ -0.73
VCL-206ENST00000623461 SFPQP23246 707 aaKnown RBP eCLIP10.51□□□□□ -0.73
VCL-206ENST00000623461 CCDC148Q8NFR7 591 aa10.51□□□□□ -0.73
VCL-206ENST00000623461 ADCY5O95622 1261 aa10.51□□□□□ -0.73
VCL-206ENST00000623461 CRACR2AQ9BSW2 395 aa10.51□□□□□ -0.73
VCL-206ENST00000623461 IGF1RP08069 1367 aa10.51□□□□□ -0.73
VCL-206ENST00000623461 CCDC181Q5TID7 509 aa10.51□□□□□ -0.73
VCL-206ENST00000623461 FEZ1Q99689 392 aa10.51□□□□□ -0.73
VCL-206ENST00000623461 CCDC171Q6TFL3 1326 aa10.51□□□□□ -0.73
VCL-206ENST00000623461 CTAGE5O15320 804 aa10.51□□□□□ -0.73
VCL-206ENST00000623461 ANO10Q9NW15 660 aa10.51□□□□□ -0.73
VCL-206ENST00000623461 ERBINQ96RT1 1412 aa10.5□□□□□ -0.73
VCL-206ENST00000623461 CCT4P50991 539 aaKnown RBP10.5□□□□□ -0.73
VCL-206ENST00000623461 TEFQ10587 303 aa10.5□□□□□ -0.73
VCL-206ENST00000623461 CLIP2Q9UDT6 1046 aa10.5□□□□□ -0.73
VCL-206ENST00000623461 USP25Q9UHP3 1055 aa10.5□□□□□ -0.73
VCL-206ENST00000623461 IVLP07476 585 aa10.5□□□□□ -0.73
VCL-206ENST00000623461 ME1P48163 572 aa10.5□□□□□ -0.73
VCL-206ENST00000623461 FSD1Q9BTV5 496 aa10.5□□□□□ -0.73
VCL-206ENST00000623461 PRM3Q9NNZ6 103 aa10.5□□□□□ -0.73
VCL-206ENST00000623461 NCOA1Q15788 1441 aa10.5□□□□□ -0.73
VCL-206ENST00000623461 NOLC1Q14978 699 aaKnown RBP eCLIP10.5□□□□□ -0.73
VCL-206ENST00000623461 SKIDA1Q1XH10 827 aa10.5□□□□□ -0.73
VCL-206ENST00000623461 TWISTNBQ3B726 338 aaPredicted RBP10.5□□□□□ -0.73
VCL-206ENST00000623461 EHBP1L1Q8N3D4 1523 aa10.5□□□□□ -0.73
VCL-206ENST00000623461 CAVIN2O95810 425 aa10.5□□□□□ -0.73
VCL-206ENST00000623461 C1orf141Q5JVX7 400 aa10.5□□□□□ -0.73
VCL-206ENST00000623461 RPAP2Q8IXW5 612 aaPredicted RBP10.5□□□□□ -0.73
VCL-206ENST00000623461 PDRG1Q9NUG6 133 aa10.5□□□□□ -0.73
VCL-206ENST00000623461 SCAND2PQ9GZW5 306 aaPredicted RBP10.49□□□□□ -0.73
VCL-206ENST00000623461 JAKMIP3Q5VZ66 844 aa10.49□□□□□ -0.73
VCL-206ENST00000623461 PLCD4Q9BRC7 762 aa10.49□□□□□ -0.73
VCL-206ENST00000623461 NGDNQ8NEJ9 315 aaKnown RBP10.49□□□□□ -0.73
VCL-206ENST00000623461 C1orf115Q9H7X2 142 aa10.49□□□□□ -0.73
VCL-206ENST00000623461 CCDC30Q5VVM6 783 aa10.49□□□□□ -0.73
VCL-206ENST00000623461 POLR3GO15318 223 aaPredicted RBP10.49□□□□□ -0.73
VCL-206ENST00000623461 CEP135Q66GS9 1140 aa10.49□□□□□ -0.73
VCL-206ENST00000623461 FAM177A1Q8N128 213 aaPredicted RBP10.49□□□□□ -0.73
VCL-206ENST00000623461 CADPSQ9ULU8 1353 aa10.49□□□□□ -0.73
VCL-206ENST00000623461 GOLGA6L9A6NEM1 432 aa10.49□□□□□ -0.73
VCL-206ENST00000623461 SURF6O75683 361 aaKnown RBP10.49□□□□□ -0.73
VCL-206ENST00000623461 GPATCH11Q8N954 259 aa10.49□□□□□ -0.73
VCL-206ENST00000623461 LAMC3Q9Y6N6 1575 aa10.49□□□□□ -0.73
VCL-206ENST00000623461 CENPHQ9H3R5 247 aa10.48□□□□□ -0.73
VCL-206ENST00000623461 TUBB4AP04350 444 aa10.48□□□□□ -0.73
VCL-206ENST00000623461 EIF2S2P20042 333 aaKnown RBP10.48□□□□□ -0.73
VCL-206ENST00000623461 SNX21Q969T3 373 aa10.48□□□□□ -0.73
VCL-206ENST00000623461 OGFRQ9NZT2 677 aa10.48□□□□□ -0.73
VCL-206ENST00000623461 NCBP3Q53F19 620 aaKnown RBP10.48□□□□□ -0.73
VCL-206ENST00000623461 C16orf45Q96MC5 204 aaPredicted RBP10.48□□□□□ -0.73
VCL-206ENST00000623461 URI1O94763 535 aaPredicted RBP10.48□□□□□ -0.73
VCL-206ENST00000623461 CSB-PGBD3P0DP91 1061 aa10.48□□□□□ -0.73
VCL-206ENST00000623461 C20orf194Q5TEA3 1177 aa10.48□□□□□ -0.73
VCL-206ENST00000623461 WWC1Q8IX03 1113 aa10.48□□□□□ -0.73
VCL-206ENST00000623461 NCAPD3P42695 1498 aa10.48□□□□□ -0.73
VCL-206ENST00000623461 DDX19AQ9NUU7 478 aaKnown RBP10.48□□□□□ -0.73
VCL-206ENST00000623461 PANK2Q9BZ23 570 aa10.48□□□□□ -0.73
VCL-206ENST00000623461 ZNF330Q9Y3S2 320 aaPredicted RBP10.48□□□□□ -0.73
VCL-206ENST00000623461 CCDC9Q9Y3X0 531 aaKnown RBP10.48□□□□□ -0.73
VCL-206ENST00000623461 EPB41L2O43491 1005 aaKnown RBP10.47□□□□□ -0.73
VCL-206ENST00000623461 EPS15P42566 896 aa10.47□□□□□ -0.73
VCL-206ENST00000623461 CEBPZQ03701 1054 aaKnown RBP10.47□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 79.3 ms