RNA–Protein interactions for RNA: ENST00000620676.4

VPS13D-214, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VPS13D, Length 16,320 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-214ENST00000620676 GPATCH3Q96I76 525 aa5.96□□□□□ -1.45
VPS13D-214ENST00000620676 PRIMPOLQ96LW4 560 aa5.96□□□□□ -1.45
VPS13D-214ENST00000620676 NUP62CLQ9H1M0 184 aa5.96□□□□□ -1.45
VPS13D-214ENST00000620676 NUP155O75694 1391 aa5.96□□□□□ -1.46
VPS13D-214ENST00000620676 HMOX1P09601 288 aa5.96□□□□□ -1.46
VPS13D-214ENST00000620676 IRX5P78411 483 aaPredicted RBP5.96□□□□□ -1.46
VPS13D-214ENST00000620676 SARNPP82979 210 aaKnown RBP5.96□□□□□ -1.46
VPS13D-214ENST00000620676 SNW1Q13573 536 aaKnown RBP5.96□□□□□ -1.46
VPS13D-214ENST00000620676 CLNS1AP54105 237 aaKnown RBP5.96□□□□□ -1.46
VPS13D-214ENST00000620676 RBM33Q96EV2 1170 aaKnown RBP5.96□□□□□ -1.46
VPS13D-214ENST00000620676 CEP164Q9UPV0 1460 aa5.96□□□□□ -1.46
VPS13D-214ENST00000620676 UNC13AQ9UPW8 1703 aa5.96□□□□□ -1.46
VPS13D-214ENST00000620676 MAP3K11Q16584 847 aa5.96□□□□□ -1.46
VPS13D-214ENST00000620676 MYRIPQ8NFW9 859 aa5.96□□□□□ -1.46
VPS13D-214ENST00000620676 ZNF330Q9Y3S2 320 aaPredicted RBP5.96□□□□□ -1.46
VPS13D-214ENST00000620676 HSP90AA4PQ58FG1 418 aa5.96□□□□□ -1.46
VPS13D-214ENST00000620676 GAS2L2Q8NHY3 880 aa5.96□□□□□ -1.46
VPS13D-214ENST00000620676 ARHGAP35Q9NRY4 1499 aa5.96□□□□□ -1.46
VPS13D-214ENST00000620676 KAT6BQ8WYB5 2073 aa5.96□□□□□ -1.46
VPS13D-214ENST00000620676 DUSP27Q5VZP5 1158 aa5.96□□□□□ -1.46
VPS13D-214ENST00000620676 ZGPATQ8N5A5 531 aaKnown RBP5.96□□□□□ -1.46
VPS13D-214ENST00000620676 SKILP12757 684 aa5.96□□□□□ -1.46
VPS13D-214ENST00000620676 DDX19BQ9UMR2 479 aa5.96□□□□□ -1.46
VPS13D-214ENST00000620676 ABCC9O60706 1549 aa5.95□□□□□ -1.46
VPS13D-214ENST00000620676 LMOD2Q6P5Q4 547 aa5.95□□□□□ -1.46
VPS13D-214ENST00000620676 TNNQ9UQP3 1299 aa5.95□□□□□ -1.46
VPS13D-214ENST00000620676 USP8P40818 1118 aa5.95□□□□□ -1.46
VPS13D-214ENST00000620676 ARHGAP29Q52LW3 1261 aa5.95□□□□□ -1.46
VPS13D-214ENST00000620676 CIZ1Q9ULV3 898 aaPredicted RBP5.95□□□□□ -1.46
VPS13D-214ENST00000620676 CLGNO14967 610 aa5.95□□□□□ -1.46
VPS13D-214ENST00000620676 MATR3P43243 847 aaKnown RBP eCLIP5.95□□□□□ -1.468e-7■■■■□ 21.9
VPS13D-214ENST00000620676 CTR9Q6PD62 1173 aa5.95□□□□□ -1.46
VPS13D-214ENST00000620676 EXOSC9Q06265 439 aaKnown RBP5.95□□□□□ -1.46
VPS13D-214ENST00000620676 JAKMIP3Q5VZ66 844 aa5.95□□□□□ -1.46
VPS13D-214ENST00000620676 ATP2B2Q01814 1243 aa5.95□□□□□ -1.46
VPS13D-214ENST00000620676 SLTMQ9NWH9 1034 aaKnown RBP eCLIP5.95□□□□□ -1.46
VPS13D-214ENST00000620676 ANKRD65E5RJM6 399 aa5.95□□□□□ -1.46
VPS13D-214ENST00000620676 SPATA32Q96LK8 384 aa5.95□□□□□ -1.46
VPS13D-214ENST00000620676 ME1P48163 572 aa5.95□□□□□ -1.46
VPS13D-214ENST00000620676 LARP1BQ659C4 914 aaKnown RBP5.94□□□□□ -1.46
VPS13D-214ENST00000620676 FAM212AQ96EL1 285 aa5.94□□□□□ -1.46
VPS13D-214ENST00000620676 EIF2S2P20042 333 aaKnown RBP5.94□□□□□ -1.46
VPS13D-214ENST00000620676 HOOK1Q9UJC3 728 aaKnown RBP5.94□□□□□ -1.46
VPS13D-214ENST00000620676 GYS2P54840 703 aa5.94□□□□□ -1.46
VPS13D-214ENST00000620676 ERCC4Q92889 916 aaPredicted RBP5.94□□□□□ -1.46
VPS13D-214ENST00000620676 PCDHB15Q9Y5E8 787 aa5.94□□□□□ -1.46
VPS13D-214ENST00000620676 TBC1D9Q6ZT07 1266 aa5.94□□□□□ -1.46
VPS13D-214ENST00000620676 GADD45BO75293 160 aaPredicted RBP5.94□□□□□ -1.46
VPS13D-214ENST00000620676 PPP2R1AP30153 589 aa5.94□□□□□ -1.46
VPS13D-214ENST00000620676 GOLGA6L10A0A0M3HER8 536 aa5.94□□□□□ -1.46
VPS13D-214ENST00000620676 GOLGA6L10A6NI86 522 aa5.94□□□□□ -1.46
VPS13D-214ENST00000620676 LRSAM1Q6UWE0 723 aa5.94□□□□□ -1.46
VPS13D-214ENST00000620676 ERC2O15083 957 aa5.94□□□□□ -1.46
VPS13D-214ENST00000620676 ZNF397Q8NF99 534 aaPredicted RBP5.94□□□□□ -1.46
VPS13D-214ENST00000620676 TTC19Q6DKK2 380 aaPredicted RBP5.94□□□□□ -1.46
VPS13D-214ENST00000620676 TMEM57Q8N5G2 664 aa5.94□□□□□ -1.46
VPS13D-214ENST00000620676 DNAI1Q9UI46 699 aa5.94□□□□□ -1.46
VPS13D-214ENST00000620676 KLHL40Q2TBA0 621 aa5.94□□□□□ -1.46
VPS13D-214ENST00000620676 MYCNP04198 464 aaPredicted RBP5.94□□□□□ -1.46
VPS13D-214ENST00000620676 RPAINQ86UA6 219 aa5.94□□□□□ -1.46
VPS13D-214ENST00000620676 ANO6Q4KMQ2 910 aa5.94□□□□□ -1.46
VPS13D-214ENST00000620676 CPSF2Q9P2I0 782 aaKnown RBP5.94□□□□□ -1.46
VPS13D-214ENST00000620676 PAXBP1Q9Y5B6 917 aa5.93□□□□□ -1.46
VPS13D-214ENST00000620676 EIF3JO75822 258 aaKnown RBP5.93□□□□□ -1.46
VPS13D-214ENST00000620676 TCP11L2Q8N4U5 519 aa5.93□□□□□ -1.46
VPS13D-214ENST00000620676 SYNE3Q6ZMZ3 975 aa5.93□□□□□ -1.46
VPS13D-214ENST00000620676 ST7Q9NRC1 585 aa5.93□□□□□ -1.46
VPS13D-214ENST00000620676 ZEB2O60315 1214 aa5.93□□□□□ -1.46
VPS13D-214ENST00000620676 RHOXF2BP0C7M4 288 aa5.93□□□□□ -1.46
VPS13D-214ENST00000620676 TMC6Q7Z403 805 aa5.93□□□□□ -1.46
VPS13D-214ENST00000620676 RHOXF2Q9BQY4 288 aa5.93□□□□□ -1.46
VPS13D-214ENST00000620676 ERLIN1O75477 346 aa5.93□□□□□ -1.46
VPS13D-214ENST00000620676 SIL1Q9H173 461 aa5.93□□□□□ -1.46
VPS13D-214ENST00000620676 RUNDC1Q96C34 613 aa5.93□□□□□ -1.46
VPS13D-214ENST00000620676 BRD4O60885 1362 aaPredicted RBP5.93□□□□□ -1.46
VPS13D-214ENST00000620676 PPP2R5AQ15172 486 aa5.93□□□□□ -1.46
VPS13D-214ENST00000620676 HINFPQ9BQA5 517 aa5.93□□□□□ -1.46
VPS13D-214ENST00000620676 WDR33Q9C0J8 1336 aaKnown RBP5.93□□□□□ -1.46
VPS13D-214ENST00000620676 SLFN5Q08AF3 891 aa5.93□□□□□ -1.46
VPS13D-214ENST00000620676 PDRG1Q9NUG6 133 aa5.93□□□□□ -1.46
VPS13D-214ENST00000620676 PUF60Q9UHX1 559 aaKnown RBP5.93□□□□□ -1.46
VPS13D-214ENST00000620676 SHTN1A0MZ66 631 aa5.93□□□□□ -1.46
VPS13D-214ENST00000620676 IFIT2P09913 472 aaKnown RBP5.93□□□□□ -1.46
VPS13D-214ENST00000620676 ZSCAN21Q9Y5A6 473 aaPredicted RBP5.93□□□□□ -1.46
VPS13D-214ENST00000620676 CCDC83Q8IWF9 413 aa5.92□□□□□ -1.46
VPS13D-214ENST00000620676 SERPINA10Q9UK55 444 aa5.92□□□□□ -1.46
VPS13D-214ENST00000620676 PPFIBP1Q86W92 1011 aa5.92□□□□□ -1.46
VPS13D-214ENST00000620676 TRAK1Q9UPV9 953 aa5.92□□□□□ -1.46
VPS13D-214ENST00000620676 BRD2P25440 801 aaKnown RBP5.92□□□□□ -1.46
VPS13D-214ENST00000620676 STK31Q9BXU1 1019 aa5.92□□□□□ -1.46
VPS13D-214ENST00000620676 ZKSCAN1P17029 563 aaPredicted RBP5.92□□□□□ -1.46
VPS13D-214ENST00000620676 NECAB1Q8N987 351 aa5.92□□□□□ -1.46
VPS13D-214ENST00000620676 EP400NLQ6ZTU2 488 aa5.92□□□□□ -1.46
VPS13D-214ENST00000620676 SMARCC1Q92922 1105 aaPredicted RBP5.92□□□□□ -1.46
VPS13D-214ENST00000620676 GUCY1B3Q02153 619 aa5.92□□□□□ -1.46
VPS13D-214ENST00000620676 KARSQ15046 597 aaKnown RBP5.92□□□□□ -1.46
VPS13D-214ENST00000620676 SMTNL1A8MU46 457 aa5.92□□□□□ -1.46
VPS13D-214ENST00000620676 SFPQP23246 707 aaKnown RBP eCLIP5.92□□□□□ -1.46
VPS13D-214ENST00000620676 STK38Q15208 465 aa5.92□□□□□ -1.46
VPS13D-214ENST00000620676 RAPGEF2Q9Y4G8 1499 aa5.92□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms