RNA–Protein interactions for RNA: ENST00000618902.1

SHMT1-211, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 5 BASIC

Gene SHMT1, Length 378 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-211ENST00000618902 NCBP3Q53F19 620 aaKnown RBP7.22□□□□□ -1.25
SHMT1-211ENST00000618902 AMER1Q5JTC6 1135 aaPredicted RBP7.22□□□□□ -1.25
SHMT1-211ENST00000618902 BARGINQ6ZT62 677 aa7.22□□□□□ -1.25
SHMT1-211ENST00000618902 SOX12O15370 315 aa7.21□□□□□ -1.26
SHMT1-211ENST00000618902 ARHGEF25Q86VW2 580 aa7.21□□□□□ -1.26
SHMT1-211ENST00000618902 BTG4Q9NY30 223 aa7.21□□□□□ -1.26
SHMT1-211ENST00000618902 SPATA31A5Q5VU36 1347 aa7.21□□□□□ -1.26
SHMT1-211ENST00000618902 SPATA31A7Q8IWB4 1347 aa7.21□□□□□ -1.26
SHMT1-211ENST00000618902 KIF24Q5T7B8 1368 aa7.2□□□□□ -1.26
SHMT1-211ENST00000618902 COL18A1P39060 1754 aa7.2□□□□□ -1.26
SHMT1-211ENST00000618902 HMGB2P26583 209 aaKnown RBP7.2□□□□□ -1.26
SHMT1-211ENST00000618902 AXIN2Q9Y2T1 843 aa7.2□□□□□ -1.26
SHMT1-211ENST00000618902 RGS12O14924 1447 aa7.19□□□□□ -1.26
SHMT1-211ENST00000618902 CAMTA1Q9Y6Y1 1673 aa7.19□□□□□ -1.26
SHMT1-211ENST00000618902 EVA1CP58658 441 aa7.19□□□□□ -1.26
SHMT1-211ENST00000618902 RRS1Q15050 365 aaKnown RBP7.19□□□□□ -1.26
SHMT1-211ENST00000618902 UPF1Q92900 1129 aaKnown RBP eCLIP7.19□□□□□ -1.26
SHMT1-211ENST00000618902 COG3Q96JB2 828 aa7.19□□□□□ -1.26
SHMT1-211ENST00000618902 KIF20BQ96Q89 1820 aa7.19□□□□□ -1.26
SHMT1-211ENST00000618902 CGNL1Q0VF96 1302 aa7.19□□□□□ -1.26
SHMT1-211ENST00000618902 LMO7Q8WWI1 1683 aa7.19□□□□□ -1.26
SHMT1-211ENST00000618902 NRAPQ86VF7 1730 aa7.18□□□□□ -1.26
SHMT1-211ENST00000618902 ZBTB7CA1YPR0 619 aa7.18□□□□□ -1.26
SHMT1-211ENST00000618902 DDX10Q13206 875 aaKnown RBP7.18□□□□□ -1.26
SHMT1-211ENST00000618902 PIAS4Q8N2W9 510 aaPredicted RBP7.18□□□□□ -1.26
SHMT1-211ENST00000618902 TCP11L2Q8N4U5 519 aa7.18□□□□□ -1.26
SHMT1-211ENST00000618902 MAP3K19Q56UN5 1328 aa7.18□□□□□ -1.26
SHMT1-211ENST00000618902 SPATA31A1Q5TZJ5 1347 aa7.18□□□□□ -1.26
SHMT1-211ENST00000618902 PLCH1Q4KWH8 1693 aa7.18□□□□□ -1.26
SHMT1-211ENST00000618902 CRB1P82279 1406 aa7.18□□□□□ -1.26
SHMT1-211ENST00000618902 TNNT2P45379 298 aaPredicted RBP7.17□□□□□ -1.26
SHMT1-211ENST00000618902 SF3B2Q13435 895 aaKnown RBP7.17□□□□□ -1.26
SHMT1-211ENST00000618902 CC2D1BQ5T0F9 858 aaKnown RBP7.17□□□□□ -1.26
SHMT1-211ENST00000618902 KRT27Q7Z3Y8 459 aa7.17□□□□□ -1.26
SHMT1-211ENST00000618902 SEPT12Q8IYM1 358 aa7.17□□□□□ -1.26
SHMT1-211ENST00000618902 CARD10Q9BWT7 1032 aa7.17□□□□□ -1.26
SHMT1-211ENST00000618902 CCDC9Q9Y3X0 531 aaKnown RBP7.17□□□□□ -1.26
SHMT1-211ENST00000618902 KNSTRNQ9Y448 316 aa7.17□□□□□ -1.26
SHMT1-211ENST00000618902 EMILIN1Q9Y6C2 1016 aa7.17□□□□□ -1.26
SHMT1-211ENST00000618902 PEAK1Q9H792 1746 aa7.17□□□□□ -1.26
SHMT1-211ENST00000618902 WDR17Q8IZU2 1322 aa7.17□□□□□ -1.26
SHMT1-211ENST00000618902 PARD3Q8TEW0 1356 aa7.17□□□□□ -1.26
SHMT1-211ENST00000618902 PLEKHG2Q9H7P9 1386 aa7.17□□□□□ -1.26
SHMT1-211ENST00000618902 BCL9O00512 1426 aa7.17□□□□□ -1.26
SHMT1-211ENST00000618902 BLMP54132 1417 aaPredicted RBP7.17□□□□□ -1.26
SHMT1-211ENST00000618902 RGPD5Q99666 1765 aa7.16□□□□□ -1.26
SHMT1-211ENST00000618902 MYT1Q01538 1121 aa7.16□□□□□ -1.26
SHMT1-211ENST00000618902 CNGB1Q14028 1251 aaPredicted RBP7.16□□□□□ -1.26
SHMT1-211ENST00000618902 LARP1Q6PKG0 1096 aaKnown RBP7.16□□□□□ -1.26
SHMT1-211ENST00000618902 FAM196AQ6ZSG2 479 aa7.16□□□□□ -1.26
SHMT1-211ENST00000618902 POLKQ9UBT6 870 aa7.16□□□□□ -1.26
SHMT1-211ENST00000618902 RTL1A6NKG5 1358 aa7.16□□□□□ -1.26
SHMT1-211ENST00000618902 NPC1L1Q9UHC9 1359 aa7.16□□□□□ -1.26
SHMT1-211ENST00000618902 COL5A2P05997 1499 aaPredicted RBP7.16□□□□□ -1.26
SHMT1-211ENST00000618902 GLI3P10071 1580 aa7.16□□□□□ -1.26
SHMT1-211ENST00000618902 HOXC9P31274 260 aa7.15□□□□□ -1.26
SHMT1-211ENST00000618902 HSP90AB2PQ58FF8 381 aa7.15□□□□□ -1.26
SHMT1-211ENST00000618902 IP6K1Q92551 441 aa7.15□□□□□ -1.26
SHMT1-211ENST00000618902 STRN4Q9NRL3 753 aa7.15□□□□□ -1.26
SHMT1-211ENST00000618902 NSD2O96028 1365 aa7.15□□□□□ -1.26
SHMT1-211ENST00000618902 ANKRD26Q9UPS8 1709 aa7.15□□□□□ -1.27
SHMT1-211ENST00000618902 LTN1O94822 1766 aa7.15□□□□□ -1.27
SHMT1-211ENST00000618902 DISP2A7MBM2 1401 aa7.14□□□□□ -1.27
SHMT1-211ENST00000618902 NPM3O75607 178 aaKnown RBP7.14□□□□□ -1.27
SHMT1-211ENST00000618902 PDE3BQ13370 1112 aa7.14□□□□□ -1.27
SHMT1-211ENST00000618902 FAM98CQ17RN3 349 aaKnown RBP7.14□□□□□ -1.27
SHMT1-211ENST00000618902 MORC1Q86VD1 984 aa7.14□□□□□ -1.27
SHMT1-211ENST00000618902 KAT6BQ8WYB5 2073 aa7.14□□□□□ -1.27
SHMT1-211ENST00000618902 MAP2P11137 1827 aaKnown RBP7.13□□□□□ -1.27
SHMT1-211ENST00000618902 SMG6Q86US8 1419 aaKnown RBP7.13□□□□□ -1.27
SHMT1-211ENST00000618902 ERBB3P21860 1342 aa7.13□□□□□ -1.27
SHMT1-211ENST00000618902 AMPHP49418 695 aa7.13□□□□□ -1.27
SHMT1-211ENST00000618902 TOM1L2Q6ZVM7 507 aa7.13□□□□□ -1.27
SHMT1-211ENST00000618902 ANKRD24Q8TF21 1146 aa7.13□□□□□ -1.27
SHMT1-211ENST00000618902 LTV1Q96GA3 475 aaPredicted RBP7.13□□□□□ -1.27
SHMT1-211ENST00000618902 THSD7AQ9UPZ6 1657 aa7.12□□□□□ -1.27
SHMT1-211ENST00000618902 INSRP06213 1382 aa7.12□□□□□ -1.27
SHMT1-211ENST00000618902 FLT4P35916 1363 aa7.12□□□□□ -1.27
SHMT1-211ENST00000618902 BAG6P46379 1132 aa7.12□□□□□ -1.27
SHMT1-211ENST00000618902 NBPF6Q5VWK0 638 aa7.12□□□□□ -1.27
SHMT1-211ENST00000618902 NBPF4Q96M43 638 aa7.12□□□□□ -1.27
SHMT1-211ENST00000618902 RGPD2P0DJD1 1756 aa7.12□□□□□ -1.27
SHMT1-211ENST00000618902 A0A0G2JS52 829 aa7.11□□□□□ -1.27
SHMT1-211ENST00000618902 EXOC5O00471 708 aa7.11□□□□□ -1.27
SHMT1-211ENST00000618902 PPM1GO15355 546 aaPredicted RBP7.11□□□□□ -1.27
SHMT1-211ENST00000618902 PPP2R1AP30153 589 aa7.11□□□□□ -1.27
SHMT1-211ENST00000618902 MTHFSP49914 203 aa7.11□□□□□ -1.27
SHMT1-211ENST00000618902 EIF4A2Q14240 407 aaKnown RBP7.11□□□□□ -1.27
SHMT1-211ENST00000618902 DDB1Q16531 1140 aa7.11□□□□□ -1.27
SHMT1-211ENST00000618902 USHBP1Q8N6Y0 703 aa7.11□□□□□ -1.27
SHMT1-211ENST00000618902 USP35Q9P2H5 1018 aa7.11□□□□□ -1.27
SHMT1-211ENST00000618902 FAM208AQ9UK61 1670 aaKnown RBP7.11□□□□□ -1.27
SHMT1-211ENST00000618902 COL3A1P02461 1466 aaPredicted RBP7.11□□□□□ -1.27
SHMT1-211ENST00000618902 OVOS2A0A0G2JMS6 1433 aa7.1□□□□□ -1.27
SHMT1-211ENST00000618902 PARP4Q9UKK3 1724 aaKnown RBP7.1□□□□□ -1.27
SHMT1-211ENST00000618902 PLSCR1O15162 318 aa7.1□□□□□ -1.27
SHMT1-211ENST00000618902 CSB-PGBD3P0DP91 1061 aa7.1□□□□□ -1.27
SHMT1-211ENST00000618902 NLRP2Q9NX02 1062 aa7.1□□□□□ -1.27
SHMT1-211ENST00000618902 NCAPD2Q15021 1401 aa7.1□□□□□ -1.27
SHMT1-211ENST00000618902 BRWD3Q6RI45 1802 aa7.09□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 114.6 ms