RNA–Protein interactions for RNA: ENST00000607092.1

CUX1-220, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-220ENST00000607092 RGPD3A6NKT7 1758 aaPredicted RBP9.04□□□□□ -0.96
CUX1-220ENST00000607092 RGPD4Q7Z3J3 1758 aa9.04□□□□□ -0.96
CUX1-220ENST00000607092 LMO7Q8WWI1 1683 aa9.04□□□□□ -0.96
CUX1-220ENST00000607092 RREB1Q92766 1687 aa9.04□□□□□ -0.96
CUX1-220ENST00000607092 TOM1L2Q6ZVM7 507 aa9.04□□□□□ -0.96
CUX1-220ENST00000607092 PARP4Q9UKK3 1724 aaKnown RBP9.04□□□□□ -0.96
CUX1-220ENST00000607092 BCL9O00512 1426 aa9.04□□□□□ -0.96
CUX1-220ENST00000607092 USP6P35125 1406 aa9.04□□□□□ -0.96
CUX1-220ENST00000607092 WDR17Q8IZU2 1322 aa9.04□□□□□ -0.96
CUX1-220ENST00000607092 TTC21AQ8NDW8 1320 aa9.03□□□□□ -0.96
CUX1-220ENST00000607092 CCDC7Q96M83 1385 aa9.02□□□□□ -0.97
CUX1-220ENST00000607092 CARD10Q9BWT7 1032 aa9.02□□□□□ -0.97
CUX1-220ENST00000607092 CABP1Q9NZU7 370 aa9.02□□□□□ -0.97
CUX1-220ENST00000607092 NUP188Q5SRE5 1749 aa9.02□□□□□ -0.97
CUX1-220ENST00000607092 SLIT3O75094 1523 aa9.01□□□□□ -0.97
CUX1-220ENST00000607092 ZBTB7CA1YPR0 619 aa9.01□□□□□ -0.97
CUX1-220ENST00000607092 EXOC5O00471 708 aa9.01□□□□□ -0.97
CUX1-220ENST00000607092 CSB-PGBD3P0DP91 1061 aa9.01□□□□□ -0.97
CUX1-220ENST00000607092 CABP2Q9NPB3 220 aa9.01□□□□□ -0.97
CUX1-220ENST00000607092 STK32BQ9NY57 414 aa9.01□□□□□ -0.97
CUX1-220ENST00000607092 ABCC6O95255 1503 aa9□□□□□ -0.97
CUX1-220ENST00000607092 CPSF1Q10570 1443 aaKnown RBP9□□□□□ -0.97
CUX1-220ENST00000607092 NBPF1Q3BBV0 1214 aa9□□□□□ -0.97
CUX1-220ENST00000607092 MYCNP04198 464 aaPredicted RBP8.99□□□□□ -0.97
CUX1-220ENST00000607092 HMGB2P26583 209 aaKnown RBP8.99□□□□□ -0.97
CUX1-220ENST00000607092 ARHGEF25Q86VW2 580 aa8.99□□□□□ -0.97
CUX1-220ENST00000607092 QRICH2Q9H0J4 1663 aa8.99□□□□□ -0.97
CUX1-220ENST00000607092 PEAK1Q9H792 1746 aa8.98□□□□□ -0.97
CUX1-220ENST00000607092 TTC21BQ7Z4L5 1316 aa8.98□□□□□ -0.97
CUX1-220ENST00000607092 LRRC37A3O60309 1634 aa8.98□□□□□ -0.97
CUX1-220ENST00000607092 TRPM1Q7Z4N2 1603 aa8.98□□□□□ -0.97
CUX1-220ENST00000607092 SLC24A1O60721 1099 aa8.97□□□□□ -0.97
CUX1-220ENST00000607092 SLC15A2Q16348 729 aa8.97□□□□□ -0.97
CUX1-220ENST00000607092 MARCH10Q8NA82 808 aaPredicted RBP8.97□□□□□ -0.97
CUX1-220ENST00000607092 MTFR1LQ9H019 292 aa8.97□□□□□ -0.97
CUX1-220ENST00000607092 KTN1Q86UP2 1357 aaKnown RBP8.97□□□□□ -0.97
CUX1-220ENST00000607092 ATXN8OSP0DMR3 200 aa8.96□□□□□ -0.98
CUX1-220ENST00000607092 TXNRD1Q16881 649 aa8.96□□□□□ -0.98
CUX1-220ENST00000607092 ROCK2O75116 1388 aaKnown RBP8.96□□□□□ -0.98
CUX1-220ENST00000607092 SBNO2Q9Y2G9 1366 aa8.96□□□□□ -0.98
CUX1-220ENST00000607092 TNS2Q63HR2 1409 aa8.96□□□□□ -0.98
CUX1-220ENST00000607092 HDGFL2Q7Z4V5 671 aaPredicted RBP8.95□□□□□ -0.98
CUX1-220ENST00000607092 SLC16A10Q8TF71 515 aa8.95□□□□□ -0.98
CUX1-220ENST00000607092 ANO8Q9HCE9 1232 aaPredicted RBP8.95□□□□□ -0.98
CUX1-220ENST00000607092 AXIN2Q9Y2T1 843 aa8.95□□□□□ -0.98
CUX1-220ENST00000607092 PIK3C2AO00443 1686 aa8.94□□□□□ -0.98
CUX1-220ENST00000607092 AKAP12Q02952 1782 aa8.94□□□□□ -0.98
CUX1-220ENST00000607092 ZBTB7AO95365 584 aa8.94□□□□□ -0.98
CUX1-220ENST00000607092 IL2RBP14784 551 aa8.94□□□□□ -0.98
CUX1-220ENST00000607092 L3MBTL2Q969R5 705 aa8.94□□□□□ -0.98
CUX1-220ENST00000607092 USP31Q70CQ4 1352 aa8.94□□□□□ -0.98
CUX1-220ENST00000607092 MAP3K5Q99683 1374 aa8.94□□□□□ -0.98
CUX1-220ENST00000607092 COL18A1P39060 1754 aa8.94□□□□□ -0.98
CUX1-220ENST00000607092 SBF2Q86WG5 1849 aa8.94□□□□□ -0.98
CUX1-220ENST00000607092 POLD1P28340 1107 aa8.93□□□□□ -0.98
CUX1-220ENST00000607092 PTGER2P43116 358 aa8.93□□□□□ -0.98
CUX1-220ENST00000607092 SLC27A3Q5K4L6 730 aa8.93□□□□□ -0.98
CUX1-220ENST00000607092 PROM2Q8N271 834 aa8.93□□□□□ -0.98
CUX1-220ENST00000607092 PUS7Q96PZ0 661 aaKnown RBP8.93□□□□□ -0.98
CUX1-220ENST00000607092 ARXQ96QS3 562 aa8.93□□□□□ -0.98
CUX1-220ENST00000607092 SYT17Q9BSW7 474 aa8.93□□□□□ -0.98
CUX1-220ENST00000607092 NLRP2Q9NX02 1062 aa8.93□□□□□ -0.98
CUX1-220ENST00000607092 TERF2IPQ9NYB0 399 aa8.93□□□□□ -0.98
CUX1-220ENST00000607092 ERBB3P21860 1342 aa8.93□□□□□ -0.98
CUX1-220ENST00000607092 CASZ1Q86V15 1759 aa8.93□□□□□ -0.98
CUX1-220ENST00000607092 WNK3Q9BYP7 1800 aa8.93□□□□□ -0.98
CUX1-220ENST00000607092 SOX12O15370 315 aa8.92□□□□□ -0.98
CUX1-220ENST00000607092 ATF5Q9Y2D1 282 aaPredicted RBP8.92□□□□□ -0.98
CUX1-220ENST00000607092 NFAT5O94916 1531 aa8.91□□□□□ -0.98
CUX1-220ENST00000607092 FHDC1Q9C0D6 1143 aaPredicted RBP8.91□□□□□ -0.98
CUX1-220ENST00000607092 EDC4Q6P2E9 1401 aaKnown RBP8.9□□□□□ -0.98
CUX1-220ENST00000607092 ZNF784Q8NCA9 323 aaPredicted RBP8.9□□□□□ -0.98
CUX1-220ENST00000607092 TMC1Q8TDI8 760 aa8.9□□□□□ -0.98
CUX1-220ENST00000607092 ANKRD24Q8TF21 1146 aa8.9□□□□□ -0.98
CUX1-220ENST00000607092 NHSQ6T4R5 1651 aa8.9□□□□□ -0.98
CUX1-220ENST00000607092 UTRNP46939 3433 aa8.89□□□□□ -0.99
CUX1-220ENST00000607092 PTF1AQ7RTS3 328 aa8.89□□□□□ -0.99
CUX1-220ENST00000607092 SUGP2Q8IX01 1082 aaKnown RBP eCLIP8.89□□□□□ -0.993e-6■□□□□ 10.3
CUX1-220ENST00000607092 SGIP1Q9BQI5 828 aa8.89□□□□□ -0.99
CUX1-220ENST00000607092 CARD11Q9BXL7 1154 aa8.89□□□□□ -0.99
CUX1-220ENST00000607092 USP54Q70EL1 1684 aa8.88□□□□□ -0.99
CUX1-220ENST00000607092 CGNL1Q0VF96 1302 aa8.88□□□□□ -0.99
CUX1-220ENST00000607092 GRIN3BO60391 1043 aa8.88□□□□□ -0.99
CUX1-220ENST00000607092 GPR162Q16538 588 aa8.88□□□□□ -0.99
CUX1-220ENST00000607092 ACSBG1Q96GR2 724 aa8.88□□□□□ -0.99
CUX1-220ENST00000607092 MON2Q7Z3U7 1717 aa8.88□□□□□ -0.99
CUX1-220ENST00000607092 MYOM1P52179 1685 aa8.88□□□□□ -0.99
CUX1-220ENST00000607092 FKBP8Q14318 412 aa8.87□□□□□ -0.99
CUX1-220ENST00000607092 IP6K1Q92551 441 aa8.87□□□□□ -0.99
CUX1-220ENST00000607092 PDGFDQ9GZP0 370 aaPredicted RBP8.87□□□□□ -0.99
CUX1-220ENST00000607092 RTN4Q9NQC3 1192 aaKnown RBP8.87□□□□□ -0.99
CUX1-220ENST00000607092 FAM208AQ9UK61 1670 aaKnown RBP8.86□□□□□ -0.99
CUX1-220ENST00000607092 C1QTNF8P60827 252 aa8.86□□□□□ -0.99
CUX1-220ENST00000607092 NEUROD1Q13562 356 aa8.86□□□□□ -0.99
CUX1-220ENST00000607092 NME9Q86XW9 330 aa8.86□□□□□ -0.99
CUX1-220ENST00000607092 FLAD1Q8NFF5 587 aa8.86□□□□□ -0.99
CUX1-220ENST00000607092 COG3Q96JB2 828 aa8.86□□□□□ -0.99
CUX1-220ENST00000607092 TFCP2L1Q9NZI6 479 aa8.86□□□□□ -0.99
CUX1-220ENST00000607092 CHD4Q14839 1912 aa8.86□□□□□ -0.99
CUX1-220ENST00000607092 ANKRD36BQ8N2N9 1353 aa8.86□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 98 ms