RNA–Protein interactions for RNA: ENST00000606749.1

CUX1-219, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 601 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-219ENST00000606749 COL18A1P39060 1754 aa10.79□□□□□ -0.68
CUX1-219ENST00000606749 AKAP12Q02952 1782 aa10.78□□□□□ -0.68
CUX1-219ENST00000606749 DDB1Q16531 1140 aa10.78□□□□□ -0.68
CUX1-219ENST00000606749 HDGFL2Q7Z4V5 671 aaPredicted RBP10.78□□□□□ -0.68
CUX1-219ENST00000606749 NME9Q86XW9 330 aa10.78□□□□□ -0.68
CUX1-219ENST00000606749 CARD10Q9BWT7 1032 aa10.78□□□□□ -0.68
CUX1-219ENST00000606749 USP31Q70CQ4 1352 aa10.77□□□□□ -0.68
CUX1-219ENST00000606749 CD163L1Q9NR16 1453 aa10.77□□□□□ -0.69
CUX1-219ENST00000606749 ST20-MTHFSA0A0A6YYL1 179 aa10.77□□□□□ -0.69
CUX1-219ENST00000606749 CSB-PGBD3P0DP91 1061 aa10.77□□□□□ -0.69
CUX1-219ENST00000606749 TESK2Q96S53 571 aa10.77□□□□□ -0.69
CUX1-219ENST00000606749 CDCA7Q9BWT1 371 aaPredicted RBP10.77□□□□□ -0.69
CUX1-219ENST00000606749 TERF2IPQ9NYB0 399 aa10.77□□□□□ -0.69
CUX1-219ENST00000606749 TNS1Q9HBL0 1735 aaKnown RBP10.77□□□□□ -0.69
CUX1-219ENST00000606749 PARD3Q8TEW0 1356 aa10.77□□□□□ -0.69
CUX1-219ENST00000606749 PARP4Q9UKK3 1724 aaKnown RBP10.75□□□□□ -0.69
CUX1-219ENST00000606749 NFAT5O94916 1531 aa10.75□□□□□ -0.69
CUX1-219ENST00000606749 EXOC5O00471 708 aa10.75□□□□□ -0.69
CUX1-219ENST00000606749 SLC24A1O60721 1099 aa10.75□□□□□ -0.69
CUX1-219ENST00000606749 MARCH10Q8NA82 808 aaPredicted RBP10.75□□□□□ -0.69
CUX1-219ENST00000606749 PLSCR1O15162 318 aa10.74□□□□□ -0.69
CUX1-219ENST00000606749 NBPF14Q5TI25 921 aa10.74□□□□□ -0.69
CUX1-219ENST00000606749 PTF1AQ7RTS3 328 aa10.74□□□□□ -0.69
CUX1-219ENST00000606749 BCL11BQ9C0K0 894 aaPredicted RBP10.74□□□□□ -0.69
CUX1-219ENST00000606749 RGPD5Q99666 1765 aa10.74□□□□□ -0.69
CUX1-219ENST00000606749 OVOS2A0A0G2JMS6 1433 aa10.74□□□□□ -0.69
CUX1-219ENST00000606749 OVOS2A0A0J9YW53 1432 aa10.74□□□□□ -0.69
CUX1-219ENST00000606749 OVOS2Q6IE36 1432 aa10.74□□□□□ -0.69
CUX1-219ENST00000606749 EDC4Q6P2E9 1401 aaKnown RBP10.74□□□□□ -0.69
CUX1-219ENST00000606749 MON2Q7Z3U7 1717 aa10.73□□□□□ -0.69
CUX1-219ENST00000606749 A0A1W2PP64 1363 aa10.73□□□□□ -0.69
CUX1-219ENST00000606749 LRP5O75197 1615 aa10.73□□□□□ -0.69
CUX1-219ENST00000606749 NLRP2Q9NX02 1062 aa10.72□□□□□ -0.69
CUX1-219ENST00000606749 CCDC7Q96M83 1385 aa10.72□□□□□ -0.69
CUX1-219ENST00000606749 BCL9O00512 1426 aa10.72□□□□□ -0.69
CUX1-219ENST00000606749 PEAK1Q9H792 1746 aa10.72□□□□□ -0.69
CUX1-219ENST00000606749 ERBB3P21860 1342 aa10.71□□□□□ -0.69
CUX1-219ENST00000606749 PROM2Q8N271 834 aa10.71□□□□□ -0.69
CUX1-219ENST00000606749 ANKRD24Q8TF21 1146 aa10.71□□□□□ -0.69
CUX1-219ENST00000606749 IP6K1Q92551 441 aa10.71□□□□□ -0.69
CUX1-219ENST00000606749 NINLQ9Y2I6 1382 aa10.71□□□□□ -0.69
CUX1-219ENST00000606749 LRRC37A3O60309 1634 aa10.7□□□□□ -0.7
CUX1-219ENST00000606749 ABCC6O95255 1503 aa10.7□□□□□ -0.7
CUX1-219ENST00000606749 IL2RBP14784 551 aa10.7□□□□□ -0.7
CUX1-219ENST00000606749 TMF1P82094 1093 aa10.7□□□□□ -0.7
CUX1-219ENST00000606749 KCNQ2O43526 872 aa10.69□□□□□ -0.7
CUX1-219ENST00000606749 FBLN1P23142 703 aa10.69□□□□□ -0.7
CUX1-219ENST00000606749 COG3Q96JB2 828 aa10.69□□□□□ -0.7
CUX1-219ENST00000606749 SBF2Q86WG5 1849 aa10.69□□□□□ -0.7
CUX1-219ENST00000606749 USP54Q70EL1 1684 aa10.69□□□□□ -0.7
CUX1-219ENST00000606749 RREB1Q92766 1687 aa10.69□□□□□ -0.7
CUX1-219ENST00000606749 NUP188Q5SRE5 1749 aa10.68□□□□□ -0.7
CUX1-219ENST00000606749 ANKRD36BQ8N2N9 1353 aa10.67□□□□□ -0.7
CUX1-219ENST00000606749 USP47Q96K76 1375 aa10.67□□□□□ -0.7
CUX1-219ENST00000606749 FYB1O15117 783 aa10.67□□□□□ -0.7
CUX1-219ENST00000606749 LTV1Q96GA3 475 aaPredicted RBP10.67□□□□□ -0.7
CUX1-219ENST00000606749 TIMELESSQ9UNS1 1208 aa10.67□□□□□ -0.7
CUX1-219ENST00000606749 WNK3Q9BYP7 1800 aa10.67□□□□□ -0.7
CUX1-219ENST00000606749 MAP3K19Q56UN5 1328 aa10.66□□□□□ -0.7
CUX1-219ENST00000606749 HOXC9P31274 260 aa10.66□□□□□ -0.7
CUX1-219ENST00000606749 AMPHP49418 695 aa10.66□□□□□ -0.7
CUX1-219ENST00000606749 TXNRD1Q16881 649 aa10.66□□□□□ -0.7
CUX1-219ENST00000606749 CDCA8Q53HL2 280 aa10.66□□□□□ -0.7
CUX1-219ENST00000606749 ACSBG1Q96GR2 724 aa10.66□□□□□ -0.7
CUX1-219ENST00000606749 SPON1Q9HCB6 807 aa10.66□□□□□ -0.7
CUX1-219ENST00000606749 ANO8Q9HCE9 1232 aaPredicted RBP10.66□□□□□ -0.7
CUX1-219ENST00000606749 LTN1O94822 1766 aa10.66□□□□□ -0.7
CUX1-219ENST00000606749 TNS2Q63HR2 1409 aa10.66□□□□□ -0.7
CUX1-219ENST00000606749 PCGF6Q9BYE7 350 aa10.65□□□□□ -0.7
CUX1-219ENST00000606749 GGNBP2Q9H3C7 697 aa10.65□□□□□ -0.7
CUX1-219ENST00000606749 RRS1Q15050 365 aaKnown RBP10.64□□□□□ -0.71
CUX1-219ENST00000606749 DDX54Q8TDD1 881 aaKnown RBP10.64□□□□□ -0.71
CUX1-219ENST00000606749 PDGFDQ9GZP0 370 aaPredicted RBP10.64□□□□□ -0.71
CUX1-219ENST00000606749 CLSPNQ9HAW4 1339 aa10.63□□□□□ -0.71
CUX1-219ENST00000606749 RGPD3A6NKT7 1758 aaPredicted RBP10.63□□□□□ -0.71
CUX1-219ENST00000606749 RGPD4Q7Z3J3 1758 aa10.63□□□□□ -0.71
CUX1-219ENST00000606749 SLC15A2Q16348 729 aa10.63□□□□□ -0.71
CUX1-219ENST00000606749 CARD14Q9BXL6 1004 aa10.63□□□□□ -0.71
CUX1-219ENST00000606749 NBPF6Q5VWK0 638 aa10.62□□□□□ -0.71
CUX1-219ENST00000606749 NBPF4Q96M43 638 aa10.62□□□□□ -0.71
CUX1-219ENST00000606749 STK32BQ9NY57 414 aa10.62□□□□□ -0.71
CUX1-219ENST00000606749 PPP1R1BQ9UD71 204 aaPredicted RBP10.62□□□□□ -0.71
CUX1-219ENST00000606749 ZCRB1Q8TBF4 217 aaKnown RBP10.61□□□□□ -0.71
CUX1-219ENST00000606749 ZBTB7AO95365 584 aa10.6□□□□□ -0.71
CUX1-219ENST00000606749 PRIM1P49642 420 aaKnown RBP10.6□□□□□ -0.71
CUX1-219ENST00000606749 HSP90AB2PQ58FF8 381 aa10.6□□□□□ -0.71
CUX1-219ENST00000606749 LRRC4BQ9NT99 713 aa10.6□□□□□ -0.71
CUX1-219ENST00000606749 ATF5Q9Y2D1 282 aaPredicted RBP10.6□□□□□ -0.71
CUX1-219ENST00000606749 KAT6BQ8WYB5 2073 aa10.59□□□□□ -0.71
CUX1-219ENST00000606749 PTGER2P43116 358 aa10.59□□□□□ -0.71
CUX1-219ENST00000606749 RTL1A6NKG5 1358 aa10.59□□□□□ -0.71
CUX1-219ENST00000606749 NHSQ6T4R5 1651 aa10.59□□□□□ -0.71
CUX1-219ENST00000606749 USHBP1Q8N6Y0 703 aa10.58□□□□□ -0.72
CUX1-219ENST00000606749 SYTL4Q96C24 671 aaPredicted RBP10.58□□□□□ -0.72
CUX1-219ENST00000606749 CGNL1Q0VF96 1302 aa10.58□□□□□ -0.72
CUX1-219ENST00000606749 CASZ1Q86V15 1759 aa10.57□□□□□ -0.72
CUX1-219ENST00000606749 FAM208AQ9UK61 1670 aaKnown RBP10.57□□□□□ -0.72
CUX1-219ENST00000606749 INSRP06213 1382 aa10.57□□□□□ -0.72
CUX1-219ENST00000606749 SLC27A3Q5K4L6 730 aa10.57□□□□□ -0.72
CUX1-219ENST00000606749 RAPGEF4Q8WZA2 1011 aa10.57□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms