RNA–Protein interactions for RNA: ENST00000601444.2

SSBP4-210, Transcript of single stranded DNA binding protein 4, humanhuman

TSL 5

Gene SSBP4, Length 427 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP4-210ENST00000601444 SPATA31A5Q5VU36 1347 aa27.67■■■□□ 2.02
SSBP4-210ENST00000601444 SPATA31A7Q8IWB4 1347 aa27.67■■■□□ 2.02
SSBP4-210ENST00000601444 COL5A2P05997 1499 aaPredicted RBP27.65■■■□□ 2.02
SSBP4-210ENST00000601444 KIF20BQ96Q89 1820 aa27.65■■■□□ 2.02
SSBP4-210ENST00000601444 SOCS7O14512 581 aa27.65■■■□□ 2.02
SSBP4-210ENST00000601444 CGNL1Q0VF96 1302 aa27.65■■■□□ 2.02
SSBP4-210ENST00000601444 USP35Q9P2H5 1018 aa27.63■■■□□ 2.01
SSBP4-210ENST00000601444 SPATA31A1Q5TZJ5 1347 aa27.63■■■□□ 2.01
SSBP4-210ENST00000601444 FAM98CQ17RN3 349 aaKnown RBP27.62■■■□□ 2.01
SSBP4-210ENST00000601444 RRS1Q15050 365 aaKnown RBP27.61■■■□□ 2.01
SSBP4-210ENST00000601444 MAP3K19Q56UN5 1328 aa27.61■■■□□ 2.01
SSBP4-210ENST00000601444 ONECUT3O60422 494 aaPredicted RBP27.6■■■□□ 2.01
SSBP4-210ENST00000601444 ZEB1P37275 1124 aaPredicted RBP27.6■■■□□ 2.01
SSBP4-210ENST00000601444 LTN1O94822 1766 aa27.6■■■□□ 2.01
SSBP4-210ENST00000601444 RGPD5Q99666 1765 aa27.59■■■□□ 2.01
SSBP4-210ENST00000601444 SEPT12Q8IYM1 358 aa27.59■■■□□ 2.01
SSBP4-210ENST00000601444 KNSTRNQ9Y448 316 aa27.57■■■□□ 2
SSBP4-210ENST00000601444 TOM1L2Q6ZVM7 507 aa27.56■■■□□ 2
SSBP4-210ENST00000601444 IP6K1Q92551 441 aa27.56■■■□□ 2
SSBP4-210ENST00000601444 WDR17Q8IZU2 1322 aa27.56■■■□□ 2
SSBP4-210ENST00000601444 A0A0G2JS52 829 aa27.55■■■□□ 2
SSBP4-210ENST00000601444 PER1O15534 1290 aaPredicted RBP27.55■■■□□ 2
SSBP4-210ENST00000601444 MYT1Q01538 1121 aa27.55■■■□□ 2
SSBP4-210ENST00000601444 CRB1P82279 1406 aa27.55■■■□□ 2
SSBP4-210ENST00000601444 ABCC6O95255 1503 aa27.54■■■□□ 2
SSBP4-210ENST00000601444 CSB-PGBD3P0DP91 1061 aa27.54■■■□□ 2
SSBP4-210ENST00000601444 HOXC9P31274 260 aa27.54■■■□□ 2
SSBP4-210ENST00000601444 AMPHP49418 695 aa27.54■■■□□ 2
SSBP4-210ENST00000601444 TNNT2P45379 298 aaPredicted RBP27.53■■■□□ 2
SSBP4-210ENST00000601444 TCP11L2Q8N4U5 519 aa27.53■■■□□ 2
SSBP4-210ENST00000601444 AMER1Q5JTC6 1135 aaPredicted RBP27.52■■■□□ 2
SSBP4-210ENST00000601444 ANKRD24Q8TF21 1146 aa27.52■■■□□ 2
SSBP4-210ENST00000601444 ERBB3P21860 1342 aa27.51■■□□□ 1.99
SSBP4-210ENST00000601444 LTV1Q96GA3 475 aaPredicted RBP27.51■■□□□ 1.99
SSBP4-210ENST00000601444 EMILIN1Q9Y6C2 1016 aa27.51■■□□□ 1.99
SSBP4-210ENST00000601444 BARGINQ6ZT62 677 aa27.5■■□□□ 1.99
SSBP4-210ENST00000601444 BLMP54132 1417 aaPredicted RBP27.49■■□□□ 1.99
SSBP4-210ENST00000601444 NSD2O96028 1365 aa27.48■■□□□ 1.99
SSBP4-210ENST00000601444 THSD7AQ9UPZ6 1657 aa27.47■■□□□ 1.99
SSBP4-210ENST00000601444 BRWD3Q6RI45 1802 aa27.47■■□□□ 1.99
SSBP4-210ENST00000601444 CARD10Q9BWT7 1032 aa27.47■■□□□ 1.99
SSBP4-210ENST00000601444 THRAP3Q9Y2W1 955 aaKnown RBP27.47■■□□□ 1.99
SSBP4-210ENST00000601444 PEAK1Q9H792 1746 aa27.47■■□□□ 1.99
SSBP4-210ENST00000601444 ANKRD26Q9UPS8 1709 aa27.47■■□□□ 1.99
SSBP4-210ENST00000601444 PPM1GO15355 546 aaPredicted RBP27.46■■□□□ 1.99
SSBP4-210ENST00000601444 HSP90AB2PQ58FF8 381 aa27.46■■□□□ 1.99
SSBP4-210ENST00000601444 MORC1Q86VD1 984 aa27.46■■□□□ 1.99
SSBP4-210ENST00000601444 NLRP2Q9NX02 1062 aa27.46■■□□□ 1.99
SSBP4-210ENST00000601444 POLKQ9UBT6 870 aa27.46■■□□□ 1.99
SSBP4-210ENST00000601444 CC2D1BQ5T0F9 858 aaKnown RBP27.45■■□□□ 1.98
SSBP4-210ENST00000601444 KRT27Q7Z3Y8 459 aa27.45■■□□□ 1.98
SSBP4-210ENST00000601444 RTL1A6NKG5 1358 aa27.45■■□□□ 1.98
SSBP4-210ENST00000601444 CNGB1Q14028 1251 aaPredicted RBP27.44■■□□□ 1.98
SSBP4-210ENST00000601444 FAM182BQ5T319 152 aa27.43■■□□□ 1.98
SSBP4-210ENST00000601444 UPF1Q92900 1129 aaKnown RBP eCLIP27.42■■□□□ 1.98
SSBP4-210ENST00000601444 FLT4P35916 1363 aa27.42■■□□□ 1.98
SSBP4-210ENST00000601444 INSRP06213 1382 aa27.4■■□□□ 1.98
SSBP4-210ENST00000601444 KIF24Q5T7B8 1368 aa27.39■■□□□ 1.98
SSBP4-210ENST00000601444 MAP2P11137 1827 aaKnown RBP27.38■■□□□ 1.97
SSBP4-210ENST00000601444 EP400Q96L91 3159 aa27.37■■□□□ 1.97
SSBP4-210ENST00000601444 NBPF6Q5VWK0 638 aa27.37■■□□□ 1.97
SSBP4-210ENST00000601444 NBPF4Q96M43 638 aa27.37■■□□□ 1.97
SSBP4-210ENST00000601444 DISP2A7MBM2 1401 aa27.36■■□□□ 1.97
SSBP4-210ENST00000601444 PDE3BQ13370 1112 aa27.34■■□□□ 1.97
SSBP4-210ENST00000601444 USHBP1Q8N6Y0 703 aa27.34■■□□□ 1.97
SSBP4-210ENST00000601444 RGPD2P0DJD1 1756 aa27.34■■□□□ 1.97
SSBP4-210ENST00000601444 NPC1L1Q9UHC9 1359 aa27.34■■□□□ 1.97
SSBP4-210ENST00000601444 PARP4Q9UKK3 1724 aaKnown RBP27.33■■□□□ 1.97
SSBP4-210ENST00000601444 DDB1Q16531 1140 aa27.33■■□□□ 1.97
SSBP4-210ENST00000601444 CDCA7Q9BWT1 371 aaPredicted RBP27.32■■□□□ 1.96
SSBP4-210ENST00000601444 WNK3Q9BYP7 1800 aa27.32■■□□□ 1.96
SSBP4-210ENST00000601444 SMG6Q86US8 1419 aaKnown RBP27.32■■□□□ 1.96
SSBP4-210ENST00000601444 IL2RBP14784 551 aa27.31■■□□□ 1.96
SSBP4-210ENST00000601444 DDX10Q13206 875 aaKnown RBP27.31■■□□□ 1.96
SSBP4-210ENST00000601444 LRRC37A3O60309 1634 aa27.3■■□□□ 1.96
SSBP4-210ENST00000601444 FAM208AQ9UK61 1670 aaKnown RBP27.3■■□□□ 1.96
SSBP4-210ENST00000601444 EIF4A2Q14240 407 aaKnown RBP27.28■■□□□ 1.96
SSBP4-210ENST00000601444 EXOC5O00471 708 aa27.27■■□□□ 1.96
SSBP4-210ENST00000601444 MTHFSP49914 203 aa27.27■■□□□ 1.96
SSBP4-210ENST00000601444 MARCH10Q8NA82 808 aaPredicted RBP27.26■■□□□ 1.95
SSBP4-210ENST00000601444 EYA1Q99502 592 aa27.25■■□□□ 1.95
SSBP4-210ENST00000601444 FAM196AQ6ZSG2 479 aa27.24■■□□□ 1.95
SSBP4-210ENST00000601444 MEGF6O75095 1541 aa27.23■■□□□ 1.95
SSBP4-210ENST00000601444 TNS2Q63HR2 1409 aa27.22■■□□□ 1.95
SSBP4-210ENST00000601444 TRIM37O94972 964 aa27.19■■□□□ 1.94
SSBP4-210ENST00000601444 CCDC125Q86Z20 511 aa27.19■■□□□ 1.94
SSBP4-210ENST00000601444 RAPGEF4Q8WZA2 1011 aa27.18■■□□□ 1.94
SSBP4-210ENST00000601444 OVOS2A0A0G2JMS6 1433 aa27.17■■□□□ 1.94
SSBP4-210ENST00000601444 NCAPD2Q15021 1401 aa27.17■■□□□ 1.94
SSBP4-210ENST00000601444 IL13P35225 146 aa27.17■■□□□ 1.94
SSBP4-210ENST00000601444 TATP17735 454 aaPredicted RBP27.16■■□□□ 1.94
SSBP4-210ENST00000601444 ZCRB1Q8TBF4 217 aaKnown RBP27.16■■□□□ 1.94
SSBP4-210ENST00000601444 DDX54Q8TDD1 881 aaKnown RBP27.16■■□□□ 1.94
SSBP4-210ENST00000601444 ZNF316A6NFI3 1004 aaPredicted RBP27.15■■□□□ 1.94
SSBP4-210ENST00000601444 PPP2R1AP30153 589 aa27.15■■□□□ 1.94
SSBP4-210ENST00000601444 DEFB132Q7Z7B7 95 aa27.15■■□□□ 1.94
SSBP4-210ENST00000601444 IGSF1Q8N6C5 1336 aa27.15■■□□□ 1.94
SSBP4-210ENST00000601444 SF3B2Q13435 895 aaKnown RBP27.13■■□□□ 1.93
SSBP4-210ENST00000601444 PTF1AQ7RTS3 328 aa27.13■■□□□ 1.93
SSBP4-210ENST00000601444 AEBP1Q8IUX7 1158 aa27.11■■□□□ 1.93
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms