RNA–Protein interactions for RNA: ENST00000600289.6

LSM4-206, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 1,113 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-206ENST00000600289 ABCC6O95255 1503 aa22.62■■□□□ 1.21
LSM4-206ENST00000600289 KIF20BQ96Q89 1820 aa22.61■■□□□ 1.21
LSM4-206ENST00000600289 NLRP6P59044 892 aa22.61■■□□□ 1.21
LSM4-206ENST00000600289 GCP02774 474 aa22.6■■□□□ 1.21
LSM4-206ENST00000600289 PRDM11Q9NQV5 511 aa22.6■■□□□ 1.21
LSM4-206ENST00000600289 LTN1O94822 1766 aa22.59■■□□□ 1.21
LSM4-206ENST00000600289 PARD3Q8TEW0 1356 aa22.58■■□□□ 1.21
LSM4-206ENST00000600289 OVOS2A0A0J9YW53 1432 aa22.57■■□□□ 1.2
LSM4-206ENST00000600289 OVOS2Q6IE36 1432 aa22.57■■□□□ 1.2
LSM4-206ENST00000600289 HSPA5P11021 654 aaKnown RBP22.57■■□□□ 1.2
LSM4-206ENST00000600289 BTG4Q9NY30 223 aa22.57■■□□□ 1.2
LSM4-206ENST00000600289 KCNH5Q8NCM2 988 aa22.56■■□□□ 1.2
LSM4-206ENST00000600289 CHD4Q14839 1912 aa22.56■■□□□ 1.2
LSM4-206ENST00000600289 RGPD5Q99666 1765 aa22.55■■□□□ 1.2
LSM4-206ENST00000600289 SENP3-EIF4A1A0A087X0R7 540 aa22.55■■□□□ 1.2
LSM4-206ENST00000600289 ZC3H6P61129 1189 aaKnown RBP22.55■■□□□ 1.2
LSM4-206ENST00000600289 ZNF784Q8NCA9 323 aaPredicted RBP22.55■■□□□ 1.2
LSM4-206ENST00000600289 AATKQ6ZMQ8 1374 aa22.53■■□□□ 1.2
LSM4-206ENST00000600289 SPATA31A5Q5VU36 1347 aa22.53■■□□□ 1.2
LSM4-206ENST00000600289 SPATA31A7Q8IWB4 1347 aa22.53■■□□□ 1.2
LSM4-206ENST00000600289 TRIM37O94972 964 aa22.52■■□□□ 1.2
LSM4-206ENST00000600289 NME9Q86XW9 330 aa22.52■■□□□ 1.2
LSM4-206ENST00000600289 SUGP2Q8IX01 1082 aaKnown RBP eCLIP22.52■■□□□ 1.2
LSM4-206ENST00000600289 CASZ1Q86V15 1759 aa22.52■■□□□ 1.2
LSM4-206ENST00000600289 COL5A2P05997 1499 aaPredicted RBP22.52■■□□□ 1.2
LSM4-206ENST00000600289 CHRNA2Q15822 529 aa22.51■■□□□ 1.19
LSM4-206ENST00000600289 WNK3Q9BYP7 1800 aa22.51■■□□□ 1.19
LSM4-206ENST00000600289 PPP1R1BQ9UD71 204 aaPredicted RBP22.5■■□□□ 1.19
LSM4-206ENST00000600289 ANKRD26Q9UPS8 1709 aa22.5■■□□□ 1.19
LSM4-206ENST00000600289 DCAF8L1A6NGE4 600 aa22.49■■□□□ 1.19
LSM4-206ENST00000600289 SPON1Q9HCB6 807 aa22.49■■□□□ 1.19
LSM4-206ENST00000600289 ARHGEF25Q86VW2 580 aa22.48■■□□□ 1.19
LSM4-206ENST00000600289 KCNQ2O43526 872 aa22.47■■□□□ 1.19
LSM4-206ENST00000600289 APBA3O96018 575 aa22.47■■□□□ 1.19
LSM4-206ENST00000600289 CEP350Q5VT06 3117 aa22.47■■□□□ 1.19
LSM4-206ENST00000600289 FAM208AQ9UK61 1670 aaKnown RBP22.46■■□□□ 1.19
LSM4-206ENST00000600289 FAM196AQ6ZSG2 479 aa22.45■■□□□ 1.18
LSM4-206ENST00000600289 SPATA31A1Q5TZJ5 1347 aa22.45■■□□□ 1.18
LSM4-206ENST00000600289 PARP4Q9UKK3 1724 aaKnown RBP22.45■■□□□ 1.18
LSM4-206ENST00000600289 RGPD3A6NKT7 1758 aaPredicted RBP22.45■■□□□ 1.18
LSM4-206ENST00000600289 RGPD4Q7Z3J3 1758 aa22.45■■□□□ 1.18
LSM4-206ENST00000600289 C1QTNF8P60827 252 aa22.44■■□□□ 1.18
LSM4-206ENST00000600289 CRB1P82279 1406 aa22.43■■□□□ 1.18
LSM4-206ENST00000600289 NSD3Q9BZ95 1437 aa22.43■■□□□ 1.18
LSM4-206ENST00000600289 NBPF14Q5TI25 921 aa22.41■■□□□ 1.18
LSM4-206ENST00000600289 COG3Q96JB2 828 aa22.41■■□□□ 1.18
LSM4-206ENST00000600289 CARD14Q9BXL6 1004 aa22.41■■□□□ 1.18
LSM4-206ENST00000600289 STRN4Q9NRL3 753 aa22.41■■□□□ 1.18
LSM4-206ENST00000600289 FYB1O15117 783 aa22.4■■□□□ 1.18
LSM4-206ENST00000600289 EVA1CP58658 441 aa22.4■■□□□ 1.18
LSM4-206ENST00000600289 C11orf95C9JLR9 678 aaPredicted RBP22.39■■□□□ 1.17
LSM4-206ENST00000600289 LARP1Q6PKG0 1096 aaKnown RBP22.39■■□□□ 1.17
LSM4-206ENST00000600289 AXIN2Q9Y2T1 843 aa22.39■■□□□ 1.17
LSM4-206ENST00000600289 WDR17Q8IZU2 1322 aa22.38■■□□□ 1.17
LSM4-206ENST00000600289 SOX12O15370 315 aa22.38■■□□□ 1.17
LSM4-206ENST00000600289 BARGINQ6ZT62 677 aa22.38■■□□□ 1.17
LSM4-206ENST00000600289 THRAP3Q9Y2W1 955 aaKnown RBP22.38■■□□□ 1.17
LSM4-206ENST00000600289 SBF2Q86WG5 1849 aa22.38■■□□□ 1.17
LSM4-206ENST00000600289 LRRC37A3O60309 1634 aa22.36■■□□□ 1.17
LSM4-206ENST00000600289 ZBTB7CA1YPR0 619 aa22.36■■□□□ 1.17
LSM4-206ENST00000600289 KIF7Q2M1P5 1343 aa22.35■■□□□ 1.17
LSM4-206ENST00000600289 RTL1A6NKG5 1358 aa22.35■■□□□ 1.17
LSM4-206ENST00000600289 MAP2P11137 1827 aaKnown RBP22.34■■□□□ 1.17
LSM4-206ENST00000600289 TCP11L2Q8N4U5 519 aa22.34■■□□□ 1.17
LSM4-206ENST00000600289 POLR3GLQ9BT43 218 aa22.34■■□□□ 1.17
LSM4-206ENST00000600289 GGNBP2Q9H3C7 697 aa22.34■■□□□ 1.17
LSM4-206ENST00000600289 PEAK1Q9H792 1746 aa22.34■■□□□ 1.17
LSM4-206ENST00000600289 CGNL1Q0VF96 1302 aa22.33■■□□□ 1.17
LSM4-206ENST00000600289 ERBB3P21860 1342 aa22.32■■□□□ 1.16
LSM4-206ENST00000600289 NSD2O96028 1365 aa22.32■■□□□ 1.16
LSM4-206ENST00000600289 KIF24Q5T7B8 1368 aa22.32■■□□□ 1.16
LSM4-206ENST00000600289 IP6K1Q92551 441 aa22.31■■□□□ 1.16
LSM4-206ENST00000600289 MAP3K19Q56UN5 1328 aa22.31■■□□□ 1.16
LSM4-206ENST00000600289 RGPD2P0DJD1 1756 aa22.3■■□□□ 1.16
LSM4-206ENST00000600289 CCDC7Q96M83 1385 aa22.3■■□□□ 1.16
LSM4-206ENST00000600289 CARD10Q9BWT7 1032 aa22.3■■□□□ 1.16
LSM4-206ENST00000600289 PANK3Q9H999 370 aa22.3■■□□□ 1.16
LSM4-206ENST00000600289 TOM1L2Q6ZVM7 507 aa22.29■■□□□ 1.16
LSM4-206ENST00000600289 PDGFDQ9GZP0 370 aaPredicted RBP22.28■■□□□ 1.16
LSM4-206ENST00000600289 ANO8Q9HCE9 1232 aaPredicted RBP22.28■■□□□ 1.16
LSM4-206ENST00000600289 USP35Q9P2H5 1018 aa22.28■■□□□ 1.16
LSM4-206ENST00000600289 PTGER2P43116 358 aa22.27■■□□□ 1.16
LSM4-206ENST00000600289 HOXC9P31274 260 aa22.26■■□□□ 1.15
LSM4-206ENST00000600289 CDCA7Q9BWT1 371 aaPredicted RBP22.26■■□□□ 1.15
LSM4-206ENST00000600289 CSB-PGBD3P0DP91 1061 aa22.25■■□□□ 1.15
LSM4-206ENST00000600289 ANKRD24Q8TF21 1146 aa22.25■■□□□ 1.15
LSM4-206ENST00000600289 WASHC2AQ641Q2 1341 aa22.25■■□□□ 1.15
LSM4-206ENST00000600289 FLT4P35916 1363 aa22.25■■□□□ 1.15
LSM4-206ENST00000600289 PDE3BQ13370 1112 aa22.24■■□□□ 1.15
LSM4-206ENST00000600289 AMPHP49418 695 aa22.23■■□□□ 1.15
LSM4-206ENST00000600289 INSRP06213 1382 aa22.23■■□□□ 1.15
LSM4-206ENST00000600289 FBLN1P23142 703 aa22.22■■□□□ 1.15
LSM4-206ENST00000600289 RRS1Q15050 365 aaKnown RBP22.22■■□□□ 1.15
LSM4-206ENST00000600289 ZBTB7AO95365 584 aa22.21■■□□□ 1.15
LSM4-206ENST00000600289 SYT17Q9BSW7 474 aa22.21■■□□□ 1.15
LSM4-206ENST00000600289 SMG6Q86US8 1419 aaKnown RBP22.21■■□□□ 1.15
LSM4-206ENST00000600289 SHANK3Q9BYB0 1731 aa22.2■■□□□ 1.14
LSM4-206ENST00000600289 FHDC1Q9C0D6 1143 aaPredicted RBP22.2■■□□□ 1.14
LSM4-206ENST00000600289 TNS2Q63HR2 1409 aa22.2■■□□□ 1.14
LSM4-206ENST00000600289 GOLGB1Q14789 3259 aaKnown RBP22.19■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms