RNA–Protein interactions for RNA: ENST00000599538.5

VRK3-217, Transcript of vaccinia related kinase 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VRK3, Length 2,126 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-217ENST00000599538 CENPQQ7L2Z9 268 aaPredicted RBP18.68■□□□□ 0.58
VRK3-217ENST00000599538 LAS1LQ9Y4W2 734 aaKnown RBP18.67■□□□□ 0.58
VRK3-217ENST00000599538 IGHDP01880 384 aa18.67■□□□□ 0.58
VRK3-217ENST00000599538 SSH1Q8WYL5 1049 aa18.67■□□□□ 0.58
VRK3-217ENST00000599538 TTC21AQ8NDW8 1320 aa18.66■□□□□ 0.58
VRK3-217ENST00000599538 FMN2Q9NZ56 1722 aa18.66■□□□□ 0.58
VRK3-217ENST00000599538 MAP3K19Q56UN5 1328 aa18.65■□□□□ 0.58
VRK3-217ENST00000599538 DLG5Q8TDM6 1919 aa18.65■□□□□ 0.58
VRK3-217ENST00000599538 FAM83GA6ND36 823 aa18.65■□□□□ 0.58
VRK3-217ENST00000599538 NUTM2GQ5VZR2 741 aa18.65■□□□□ 0.58
VRK3-217ENST00000599538 SULT6B1Q6IMI4 303 aa18.65■□□□□ 0.58
VRK3-217ENST00000599538 PIK3C2AO00443 1686 aa18.65■□□□□ 0.58
VRK3-217ENST00000599538 ANKARQ7Z5J8 1434 aa18.64■□□□□ 0.58
VRK3-217ENST00000599538 SMC4Q9NTJ3 1288 aa18.64■□□□□ 0.57
VRK3-217ENST00000599538 CT47B1P0C2W7 299 aaPredicted RBP18.64■□□□□ 0.57
VRK3-217ENST00000599538 DCTN1Q14203 1278 aa18.63■□□□□ 0.57
VRK3-217ENST00000599538 PDE4AP27815 886 aa18.62■□□□□ 0.57
VRK3-217ENST00000599538 NLRP6P59044 892 aa18.61■□□□□ 0.57
VRK3-217ENST00000599538 ZKSCAN2Q63HK3 967 aa18.61■□□□□ 0.57
VRK3-217ENST00000599538 MS4A1P11836 297 aa18.61■□□□□ 0.57
VRK3-217ENST00000599538 TRIM27P14373 513 aa18.6■□□□□ 0.57
VRK3-217ENST00000599538 TSPYL6Q8N831 410 aa18.6■□□□□ 0.57
VRK3-217ENST00000599538 PCDHB15Q9Y5E8 787 aa18.6■□□□□ 0.57
VRK3-217ENST00000599538 NPHP4O75161 1426 aaPredicted RBP18.6■□□□□ 0.57
VRK3-217ENST00000599538 ZNF853P0CG23 659 aa18.59■□□□□ 0.57
VRK3-217ENST00000599538 BACH2Q9BYV9 841 aa18.59■□□□□ 0.57
VRK3-217ENST00000599538 NOB1Q9ULX3 412 aaKnown RBP18.59■□□□□ 0.57
VRK3-217ENST00000599538 RGPD1P0DJD0 1748 aa18.59■□□□□ 0.57
VRK3-217ENST00000599538 PAK3O75914 559 aaPredicted RBP18.59■□□□□ 0.57
VRK3-217ENST00000599538 MBIPQ9NS73 344 aa18.59■□□□□ 0.57
VRK3-217ENST00000599538 MARF1Q9Y4F3 1742 aaKnown RBP18.59■□□□□ 0.57
VRK3-217ENST00000599538 DZIP1LQ8IYY4 767 aaKnown RBP18.58■□□□□ 0.57
VRK3-217ENST00000599538 ELL2O00472 640 aaPredicted RBP18.58■□□□□ 0.56
VRK3-217ENST00000599538 MVPQ14764 893 aaKnown RBP18.58■□□□□ 0.56
VRK3-217ENST00000599538 PHF8Q9UPP1 1060 aa18.58■□□□□ 0.56
VRK3-217ENST00000599538 SBNO1A3KN83 1393 aa18.57■□□□□ 0.56
VRK3-217ENST00000599538 ABTB2Q8N961 1025 aa18.57■□□□□ 0.56
VRK3-217ENST00000599538 IFT57Q9NWB7 429 aa18.57■□□□□ 0.56
VRK3-217ENST00000599538 RGS3P49796 1198 aa18.56■□□□□ 0.56
VRK3-217ENST00000599538 FTSJ3Q8IY81 847 aaKnown RBP18.56■□□□□ 0.56
VRK3-217ENST00000599538 FLT4P35916 1363 aa18.56■□□□□ 0.56
VRK3-217ENST00000599538 VAMP4O75379 141 aa18.56■□□□□ 0.56
VRK3-217ENST00000599538 AMPHP49418 695 aa18.56■□□□□ 0.56
VRK3-217ENST00000599538 GNAI1P63096 354 aa18.56■□□□□ 0.56
VRK3-217ENST00000599538 ATF7IPQ6VMQ6 1270 aa18.56■□□□□ 0.56
VRK3-217ENST00000599538 ADGRL3Q9HAR2 1447 aa18.55■□□□□ 0.56
VRK3-217ENST00000599538 C14orf37Q86TY3 774 aa18.55■□□□□ 0.56
VRK3-217ENST00000599538 CFAP44Q96MT7 982 aa18.55■□□□□ 0.56
VRK3-217ENST00000599538 CALD1Q05682 793 aaKnown RBP18.54■□□□□ 0.56
VRK3-217ENST00000599538 ESCO1Q5FWF5 840 aa18.54■□□□□ 0.56
VRK3-217ENST00000599538 MCM10Q7L590 875 aa18.54■□□□□ 0.56
VRK3-217ENST00000599538 EYA1Q99502 592 aa18.54■□□□□ 0.56
VRK3-217ENST00000599538 LMOD3Q0VAK6 560 aa18.53■□□□□ 0.56
VRK3-217ENST00000599538 C8orf58Q8NAV2 365 aa18.53■□□□□ 0.56
VRK3-217ENST00000599538 FOXO3O43524 673 aa18.53■□□□□ 0.56
VRK3-217ENST00000599538 ALDH1L2Q3SY69 923 aa18.53■□□□□ 0.56
VRK3-217ENST00000599538 TMEM57Q8N5G2 664 aa18.52■□□□□ 0.56
VRK3-217ENST00000599538 HOXC9P31274 260 aa18.52■□□□□ 0.55
VRK3-217ENST00000599538 ORAI2Q96SN7 254 aa18.52■□□□□ 0.55
VRK3-217ENST00000599538 ARHGEF10O15013 1369 aa18.52■□□□□ 0.55
VRK3-217ENST00000599538 ITPRIPQ8IWB1 547 aa18.51■□□□□ 0.55
VRK3-217ENST00000599538 NPM2Q86SE8 214 aaKnown RBP18.5■□□□□ 0.55
VRK3-217ENST00000599538 IGSF1Q8N6C5 1336 aa18.5■□□□□ 0.55
VRK3-217ENST00000599538 KIF16BQ96L93 1317 aa18.5■□□□□ 0.55
VRK3-217ENST00000599538 MTHFSDQ2M296 383 aaKnown RBP18.5■□□□□ 0.55
VRK3-217ENST00000599538 KRT24Q2M2I5 525 aa18.5■□□□□ 0.55
VRK3-217ENST00000599538 TWISTNBQ3B726 338 aaPredicted RBP18.5■□□□□ 0.55
VRK3-217ENST00000599538 XPCQ01831 940 aaPredicted RBP18.49■□□□□ 0.55
VRK3-217ENST00000599538 MRPL50Q8N5N7 158 aaKnown RBP18.49■□□□□ 0.55
VRK3-217ENST00000599538 KDRP35968 1356 aa18.49■□□□□ 0.55
VRK3-217ENST00000599538 AAMPQ13685 434 aa18.49■□□□□ 0.55
VRK3-217ENST00000599538 LTV1Q96GA3 475 aaPredicted RBP18.49■□□□□ 0.55
VRK3-217ENST00000599538 USP54Q70EL1 1684 aa18.48■□□□□ 0.55
VRK3-217ENST00000599538 PSME1Q06323 249 aa18.48■□□□□ 0.55
VRK3-217ENST00000599538 BRPF1P55201 1214 aaPredicted RBP18.47■□□□□ 0.55
VRK3-217ENST00000599538 C8orf34Q49A92 452 aa18.47■□□□□ 0.55
VRK3-217ENST00000599538 IPO8O15397 1037 aaKnown RBP18.47■□□□□ 0.55
VRK3-217ENST00000599538 ANP32AP39687 249 aaKnown RBP18.47■□□□□ 0.55
VRK3-217ENST00000599538 ZNF428Q96B54 188 aa18.47■□□□□ 0.55
VRK3-217ENST00000599538 ANP32EQ9BTT0 268 aa18.46■□□□□ 0.55
VRK3-217ENST00000599538 DDX19BQ9UMR2 479 aa18.46■□□□□ 0.55
VRK3-217ENST00000599538 NWD1Q149M9 1564 aa18.46■□□□□ 0.55
VRK3-217ENST00000599538 CHL1O00533 1208 aa18.46■□□□□ 0.55
VRK3-217ENST00000599538 PLEKHG5O94827 1062 aa18.46■□□□□ 0.55
VRK3-217ENST00000599538 PROSER2Q86WR7 435 aaPredicted RBP18.46■□□□□ 0.55
VRK3-217ENST00000599538 MIS18AQ9NYP9 233 aa18.46■□□□□ 0.55
VRK3-217ENST00000599538 CRB1P82279 1406 aa18.45■□□□□ 0.54
VRK3-217ENST00000599538 USHBP1Q8N6Y0 703 aa18.44■□□□□ 0.54
VRK3-217ENST00000599538 IPO9Q96P70 1041 aaKnown RBP18.44■□□□□ 0.54
VRK3-217ENST00000599538 ZBTB40Q9NUA8 1239 aa18.44■□□□□ 0.54
VRK3-217ENST00000599538 LTN1O94822 1766 aa18.43■□□□□ 0.54
VRK3-217ENST00000599538 FAM161AQ3B820 660 aa18.43■□□□□ 0.54
VRK3-217ENST00000599538 RWDD1Q9H446 243 aaPredicted RBP18.43■□□□□ 0.54
VRK3-217ENST00000599538 PDZRN3Q9UPQ7 1066 aa18.43■□□□□ 0.54
VRK3-217ENST00000599538 NFAT5O94916 1531 aa18.43■□□□□ 0.54
VRK3-217ENST00000599538 KIF24Q5T7B8 1368 aa18.42■□□□□ 0.54
VRK3-217ENST00000599538 ZBTB7CA1YPR0 619 aa18.41■□□□□ 0.54
VRK3-217ENST00000599538 IP6K1Q92551 441 aa18.4■□□□□ 0.54
VRK3-217ENST00000599538 ARHGAP45Q92619 1136 aa18.4■□□□□ 0.54
VRK3-217ENST00000599538 HSPA2P54652 639 aa18.39■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms