RNA–Protein interactions for RNA: ENST00000593829.5

LSM4-203, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM4, Length 1,908 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-203ENST00000593829 EVA1CP58658 441 aa26.86■■□□□ 1.89
LSM4-203ENST00000593829 STRN4Q9NRL3 753 aa26.86■■□□□ 1.89
LSM4-203ENST00000593829 CCDC9Q9Y3X0 531 aaKnown RBP26.86■■□□□ 1.89
LSM4-203ENST00000593829 COL18A1P39060 1754 aa26.83■■□□□ 1.89
LSM4-203ENST00000593829 AXIN2Q9Y2T1 843 aa26.82■■□□□ 1.88
LSM4-203ENST00000593829 NSD2O96028 1365 aa26.81■■□□□ 1.88
LSM4-203ENST00000593829 ABCC6O95255 1503 aa26.81■■□□□ 1.88
LSM4-203ENST00000593829 COL5A2P05997 1499 aaPredicted RBP26.81■■□□□ 1.88
LSM4-203ENST00000593829 CDK12Q9NYV4 1490 aaPredicted RBP26.81■■□□□ 1.88
LSM4-203ENST00000593829 FBLN1P23142 703 aa26.81■■□□□ 1.88
LSM4-203ENST00000593829 LTN1O94822 1766 aa26.8■■□□□ 1.88
LSM4-203ENST00000593829 PER1O15534 1290 aaPredicted RBP26.79■■□□□ 1.88
LSM4-203ENST00000593829 MAP3K19Q56UN5 1328 aa26.79■■□□□ 1.88
LSM4-203ENST00000593829 SPATA31A5Q5VU36 1347 aa26.79■■□□□ 1.88
LSM4-203ENST00000593829 SPATA31A7Q8IWB4 1347 aa26.79■■□□□ 1.88
LSM4-203ENST00000593829 GLI3P10071 1580 aa26.79■■□□□ 1.88
LSM4-203ENST00000593829 LARP1Q6PKG0 1096 aaKnown RBP26.78■■□□□ 1.88
LSM4-203ENST00000593829 AMPHP49418 695 aa26.77■■□□□ 1.88
LSM4-203ENST00000593829 RRS1Q15050 365 aaKnown RBP26.77■■□□□ 1.88
LSM4-203ENST00000593829 AMER1Q5JTC6 1135 aaPredicted RBP26.77■■□□□ 1.88
LSM4-203ENST00000593829 IP6K1Q92551 441 aa26.77■■□□□ 1.88
LSM4-203ENST00000593829 ANKRD26Q9UPS8 1709 aa26.76■■□□□ 1.87
LSM4-203ENST00000593829 SPATA31A1Q5TZJ5 1347 aa26.76■■□□□ 1.87
LSM4-203ENST00000593829 RGS12O14924 1447 aa26.74■■□□□ 1.87
LSM4-203ENST00000593829 WDR17Q8IZU2 1322 aa26.74■■□□□ 1.87
LSM4-203ENST00000593829 RGPD5Q99666 1765 aa26.73■■□□□ 1.87
LSM4-203ENST00000593829 BLMP54132 1417 aaPredicted RBP26.73■■□□□ 1.87
LSM4-203ENST00000593829 CSB-PGBD3P0DP91 1061 aa26.73■■□□□ 1.87
LSM4-203ENST00000593829 MORC1Q86VD1 984 aa26.73■■□□□ 1.87
LSM4-203ENST00000593829 CRB1P82279 1406 aa26.73■■□□□ 1.87
LSM4-203ENST00000593829 USP35Q9P2H5 1018 aa26.73■■□□□ 1.87
LSM4-203ENST00000593829 RTL1A6NKG5 1358 aa26.72■■□□□ 1.87
LSM4-203ENST00000593829 ONECUT3O60422 494 aaPredicted RBP26.72■■□□□ 1.87
LSM4-203ENST00000593829 HOXC9P31274 260 aa26.72■■□□□ 1.87
LSM4-203ENST00000593829 TOM1L2Q6ZVM7 507 aa26.72■■□□□ 1.87
LSM4-203ENST00000593829 TNNT2P45379 298 aaPredicted RBP26.71■■□□□ 1.87
LSM4-203ENST00000593829 FAM98CQ17RN3 349 aaKnown RBP26.71■■□□□ 1.87
LSM4-203ENST00000593829 ERBB3P21860 1342 aa26.7■■□□□ 1.87
LSM4-203ENST00000593829 KIF24Q5T7B8 1368 aa26.7■■□□□ 1.86
LSM4-203ENST00000593829 TCP11L2Q8N4U5 519 aa26.69■■□□□ 1.86
LSM4-203ENST00000593829 ANKRD24Q8TF21 1146 aa26.69■■□□□ 1.86
LSM4-203ENST00000593829 EMILIN1Q9Y6C2 1016 aa26.69■■□□□ 1.86
LSM4-203ENST00000593829 NPC1L1Q9UHC9 1359 aa26.68■■□□□ 1.86
LSM4-203ENST00000593829 SEPT12Q8IYM1 358 aa26.68■■□□□ 1.86
LSM4-203ENST00000593829 THRAP3Q9Y2W1 955 aaKnown RBP26.68■■□□□ 1.86
LSM4-203ENST00000593829 FLT4P35916 1363 aa26.67■■□□□ 1.86
LSM4-203ENST00000593829 CC2D1BQ5T0F9 858 aaKnown RBP26.67■■□□□ 1.86
LSM4-203ENST00000593829 A0A0G2JS52 829 aa26.67■■□□□ 1.86
LSM4-203ENST00000593829 BARGINQ6ZT62 677 aa26.67■■□□□ 1.86
LSM4-203ENST00000593829 PPM1GO15355 546 aaPredicted RBP26.66■■□□□ 1.86
LSM4-203ENST00000593829 MIER1Q8N108 512 aa26.66■■□□□ 1.86
LSM4-203ENST00000593829 CARD10Q9BWT7 1032 aa26.66■■□□□ 1.86
LSM4-203ENST00000593829 POLKQ9UBT6 870 aa26.66■■□□□ 1.86
LSM4-203ENST00000593829 LTV1Q96GA3 475 aaPredicted RBP26.65■■□□□ 1.86
LSM4-203ENST00000593829 NLRP2Q9NX02 1062 aa26.64■■□□□ 1.86
LSM4-203ENST00000593829 PEAK1Q9H792 1746 aa26.64■■□□□ 1.85
LSM4-203ENST00000593829 HSP90AB2PQ58FF8 381 aa26.63■■□□□ 1.85
LSM4-203ENST00000593829 INSRP06213 1382 aa26.63■■□□□ 1.85
LSM4-203ENST00000593829 MAP2P11137 1827 aaKnown RBP26.63■■□□□ 1.85
LSM4-203ENST00000593829 CNGB1Q14028 1251 aaPredicted RBP26.61■■□□□ 1.85
LSM4-203ENST00000593829 SOCS7O14512 581 aa26.61■■□□□ 1.85
LSM4-203ENST00000593829 SMG6Q86US8 1419 aaKnown RBP26.6■■□□□ 1.85
LSM4-203ENST00000593829 THSD7AQ9UPZ6 1657 aa26.6■■□□□ 1.85
LSM4-203ENST00000593829 DDX10Q13206 875 aaKnown RBP26.6■■□□□ 1.85
LSM4-203ENST00000593829 FAM208AQ9UK61 1670 aaKnown RBP26.57■■□□□ 1.84
LSM4-203ENST00000593829 KRT27Q7Z3Y8 459 aa26.57■■□□□ 1.84
LSM4-203ENST00000593829 CDCA7Q9BWT1 371 aaPredicted RBP26.57■■□□□ 1.84
LSM4-203ENST00000593829 BRWD3Q6RI45 1802 aa26.56■■□□□ 1.84
LSM4-203ENST00000593829 NBPF6Q5VWK0 638 aa26.53■■□□□ 1.84
LSM4-203ENST00000593829 NBPF4Q96M43 638 aa26.53■■□□□ 1.84
LSM4-203ENST00000593829 DISP2A7MBM2 1401 aa26.51■■□□□ 1.83
LSM4-203ENST00000593829 PARP4Q9UKK3 1724 aaKnown RBP26.51■■□□□ 1.83
LSM4-203ENST00000593829 MTHFSP49914 203 aa26.51■■□□□ 1.83
LSM4-203ENST00000593829 PDE3BQ13370 1112 aa26.51■■□□□ 1.83
LSM4-203ENST00000593829 WNK3Q9BYP7 1800 aa26.5■■□□□ 1.83
LSM4-203ENST00000593829 IL2RBP14784 551 aa26.5■■□□□ 1.83
LSM4-203ENST00000593829 DDB1Q16531 1140 aa26.49■■□□□ 1.83
LSM4-203ENST00000593829 EIF4A2Q14240 407 aaKnown RBP26.49■■□□□ 1.83
LSM4-203ENST00000593829 YTHDC1Q96MU7 727 aaKnown RBP26.49■■□□□ 1.83
LSM4-203ENST00000593829 RGPD2P0DJD1 1756 aa26.49■■□□□ 1.83
LSM4-203ENST00000593829 USHBP1Q8N6Y0 703 aa26.47■■□□□ 1.83
LSM4-203ENST00000593829 LRRC37A3O60309 1634 aa26.46■■□□□ 1.83
LSM4-203ENST00000593829 EXOC5O00471 708 aa26.45■■□□□ 1.83
LSM4-203ENST00000593829 EYA1Q99502 592 aa26.45■■□□□ 1.82
LSM4-203ENST00000593829 UPF1Q92900 1129 aaKnown RBP eCLIP26.44■■□□□ 1.828e-33■■■□□ 18.1
LSM4-203ENST00000593829 FAM182BQ5T319 152 aa26.43■■□□□ 1.82
LSM4-203ENST00000593829 RAPGEF4Q8WZA2 1011 aa26.42■■□□□ 1.82
LSM4-203ENST00000593829 PARD3Q8TEW0 1356 aa26.42■■□□□ 1.82
LSM4-203ENST00000593829 PPP2R1AP30153 589 aa26.41■■□□□ 1.82
LSM4-203ENST00000593829 FAM196AQ6ZSG2 479 aa26.41■■□□□ 1.82
LSM4-203ENST00000593829 NCAPD2Q15021 1401 aa26.41■■□□□ 1.82
LSM4-203ENST00000593829 TNS2Q63HR2 1409 aa26.41■■□□□ 1.82
LSM4-203ENST00000593829 EP400Q96L91 3159 aa26.41■■□□□ 1.82
LSM4-203ENST00000593829 MEGF6O75095 1541 aa26.39■■□□□ 1.82
LSM4-203ENST00000593829 IL13P35225 146 aa26.39■■□□□ 1.81
LSM4-203ENST00000593829 IGSF1Q8N6C5 1336 aa26.39■■□□□ 1.81
LSM4-203ENST00000593829 TATP17735 454 aaPredicted RBP26.38■■□□□ 1.81
LSM4-203ENST00000593829 RALBP1Q15311 655 aa26.37■■□□□ 1.81
LSM4-203ENST00000593829 MARCH10Q8NA82 808 aaPredicted RBP26.37■■□□□ 1.81
LSM4-203ENST00000593829 OVOS2A0A0G2JMS6 1433 aa26.37■■□□□ 1.81
Retrieved 100 of 20,778 RNA–protein pairs in 107.7 ms