RNA–Protein interactions for RNA: ENST00000593425.5

LIG1-205, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 575 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-205ENST00000593425 RGPD3A6NKT7 1758 aaPredicted RBP23.46■■□□□ 1.35
LIG1-205ENST00000593425 RGPD4Q7Z3J3 1758 aa23.46■■□□□ 1.35
LIG1-205ENST00000593425 NFAT5O94916 1531 aa23.45■■□□□ 1.34
LIG1-205ENST00000593425 TOM1L2Q6ZVM7 507 aa23.45■■□□□ 1.34
LIG1-205ENST00000593425 WDR17Q8IZU2 1322 aa23.44■■□□□ 1.34
LIG1-205ENST00000593425 ARHGEF25Q86VW2 580 aa23.43■■□□□ 1.34
LIG1-205ENST00000593425 ZNF692Q9BU19 519 aaPredicted RBP23.43■■□□□ 1.34
LIG1-205ENST00000593425 SOX12O15370 315 aa23.42■■□□□ 1.34
LIG1-205ENST00000593425 DDB1Q16531 1140 aa23.42■■□□□ 1.34
LIG1-205ENST00000593425 TTC21AQ8NDW8 1320 aa23.41■■□□□ 1.34
LIG1-205ENST00000593425 NBPF14Q5TI25 921 aa23.41■■□□□ 1.34
LIG1-205ENST00000593425 KTN1Q86UP2 1357 aaKnown RBP23.4■■□□□ 1.34
LIG1-205ENST00000593425 C11orf95C9JLR9 678 aaPredicted RBP23.4■■□□□ 1.34
LIG1-205ENST00000593425 KCNH5Q8NCM2 988 aa23.4■■□□□ 1.34
LIG1-205ENST00000593425 USP54Q70EL1 1684 aa23.4■■□□□ 1.34
LIG1-205ENST00000593425 PTF1AQ7RTS3 328 aa23.39■■□□□ 1.33
LIG1-205ENST00000593425 SBNO2Q9Y2G9 1366 aa23.38■■□□□ 1.33
LIG1-205ENST00000593425 MARCH10Q8NA82 808 aaPredicted RBP23.37■■□□□ 1.33
LIG1-205ENST00000593425 ABCC6O95255 1503 aa23.37■■□□□ 1.33
LIG1-205ENST00000593425 CD163L1Q9NR16 1453 aa23.36■■□□□ 1.33
LIG1-205ENST00000593425 LTN1O94822 1766 aa23.35■■□□□ 1.33
LIG1-205ENST00000593425 CSB-PGBD3P0DP91 1061 aa23.35■■□□□ 1.33
LIG1-205ENST00000593425 CARD10Q9BWT7 1032 aa23.35■■□□□ 1.33
LIG1-205ENST00000593425 BCL9O00512 1426 aa23.34■■□□□ 1.33
LIG1-205ENST00000593425 PLSCR1O15162 318 aa23.34■■□□□ 1.33
LIG1-205ENST00000593425 CDCA7Q9BWT1 371 aaPredicted RBP23.34■■□□□ 1.33
LIG1-205ENST00000593425 CASZ1Q86V15 1759 aa23.34■■□□□ 1.33
LIG1-205ENST00000593425 SUGP2Q8IX01 1082 aaKnown RBP eCLIP23.33■■□□□ 1.33
LIG1-205ENST00000593425 BCL11BQ9C0K0 894 aaPredicted RBP23.33■■□□□ 1.33
LIG1-205ENST00000593425 USP31Q70CQ4 1352 aa23.32■■□□□ 1.32
LIG1-205ENST00000593425 ANO8Q9HCE9 1232 aaPredicted RBP23.32■■□□□ 1.32
LIG1-205ENST00000593425 CARD11Q9BXL7 1154 aa23.31■■□□□ 1.32
LIG1-205ENST00000593425 TNS2Q63HR2 1409 aa23.31■■□□□ 1.32
LIG1-205ENST00000593425 CCDC7Q96M83 1385 aa23.3■■□□□ 1.32
LIG1-205ENST00000593425 NME9Q86XW9 330 aa23.3■■□□□ 1.32
LIG1-205ENST00000593425 KCNQ2O43526 872 aa23.28■■□□□ 1.32
LIG1-205ENST00000593425 PROM2Q8N271 834 aa23.28■■□□□ 1.32
LIG1-205ENST00000593425 SPON1Q9HCB6 807 aa23.28■■□□□ 1.32
LIG1-205ENST00000593425 NHSQ6T4R5 1651 aa23.28■■□□□ 1.32
LIG1-205ENST00000593425 ERBB3P21860 1342 aa23.27■■□□□ 1.32
LIG1-205ENST00000593425 EXOC5O00471 708 aa23.26■■□□□ 1.31
LIG1-205ENST00000593425 TMC1Q8TDI8 760 aa23.26■■□□□ 1.31
LIG1-205ENST00000593425 SLC12A5Q9H2X9 1139 aa23.25■■□□□ 1.31
LIG1-205ENST00000593425 EDC4Q6P2E9 1401 aaKnown RBP23.25■■□□□ 1.31
LIG1-205ENST00000593425 PDGFDQ9GZP0 370 aaPredicted RBP23.24■■□□□ 1.31
LIG1-205ENST00000593425 PPP1R1BQ9UD71 204 aaPredicted RBP23.24■■□□□ 1.31
LIG1-205ENST00000593425 A0A1W2PP64 1363 aa23.24■■□□□ 1.31
LIG1-205ENST00000593425 TONSLQ96HA7 1378 aa23.24■■□□□ 1.31
LIG1-205ENST00000593425 HDGFL2Q7Z4V5 671 aaPredicted RBP23.23■■□□□ 1.31
LIG1-205ENST00000593425 TXNRD1Q16881 649 aa23.21■■□□□ 1.31
LIG1-205ENST00000593425 NLRP2Q9NX02 1062 aa23.21■■□□□ 1.31
LIG1-205ENST00000593425 NINLQ9Y2I6 1382 aa23.21■■□□□ 1.31
LIG1-205ENST00000593425 MYOM1P52179 1685 aa23.21■■□□□ 1.31
LIG1-205ENST00000593425 BTAF1O14981 1849 aa23.19■■□□□ 1.3
LIG1-205ENST00000593425 ANKRD24Q8TF21 1146 aa23.19■■□□□ 1.3
LIG1-205ENST00000593425 ACSBG1Q96GR2 724 aa23.18■■□□□ 1.3
LIG1-205ENST00000593425 PAPPAQ13219 1627 aa23.18■■□□□ 1.3
LIG1-205ENST00000593425 FAM208AQ9UK61 1670 aaKnown RBP23.17■■□□□ 1.3
LIG1-205ENST00000593425 ZBTB7AO95365 584 aa23.17■■□□□ 1.3
LIG1-205ENST00000593425 IL2RBP14784 551 aa23.17■■□□□ 1.3
LIG1-205ENST00000593425 TERF2IPQ9NYB0 399 aa23.17■■□□□ 1.3
LIG1-205ENST00000593425 SLC15A2Q16348 729 aa23.15■■□□□ 1.3
LIG1-205ENST00000593425 PUS7Q96PZ0 661 aaKnown RBP23.15■■□□□ 1.3
LIG1-205ENST00000593425 TESK2Q96S53 571 aa23.15■■□□□ 1.3
LIG1-205ENST00000593425 STK32BQ9NY57 414 aa23.15■■□□□ 1.3
LIG1-205ENST00000593425 PTGER2P43116 358 aa23.13■■□□□ 1.29
LIG1-205ENST00000593425 YY1P25490 414 aa23.12■■□□□ 1.29
LIG1-205ENST00000593425 RGPD2P0DJD1 1756 aa23.12■■□□□ 1.29
LIG1-205ENST00000593425 ST20-MTHFSA0A0A6YYL1 179 aa23.11■■□□□ 1.29
LIG1-205ENST00000593425 ATF5Q9Y2D1 282 aaPredicted RBP23.11■■□□□ 1.29
LIG1-205ENST00000593425 IP6K1Q92551 441 aa23.1■■□□□ 1.29
LIG1-205ENST00000593425 SHANK3Q9BYB0 1731 aa23.09■■□□□ 1.29
LIG1-205ENST00000593425 LTV1Q96GA3 475 aaPredicted RBP23.09■■□□□ 1.29
LIG1-205ENST00000593425 DOT1LQ8TEK3 1739 aa23.08■■□□□ 1.28
LIG1-205ENST00000593425 FBLN1P23142 703 aa23.07■■□□□ 1.28
LIG1-205ENST00000593425 KAT6BQ8WYB5 2073 aa23.07■■□□□ 1.28
LIG1-205ENST00000593425 MAP3K19Q56UN5 1328 aa23.07■■□□□ 1.28
LIG1-205ENST00000593425 DCAF8L1A6NGE4 600 aa23.05■■□□□ 1.28
LIG1-205ENST00000593425 COG3Q96JB2 828 aa23.05■■□□□ 1.28
LIG1-205ENST00000593425 MTFR1LQ9H019 292 aa23.05■■□□□ 1.28
LIG1-205ENST00000593425 ANKRD36BQ8N2N9 1353 aa23.04■■□□□ 1.28
LIG1-205ENST00000593425 HOXC9P31274 260 aa23.04■■□□□ 1.28
LIG1-205ENST00000593425 ZNF827Q17R98 1081 aa23.04■■□□□ 1.28
LIG1-205ENST00000593425 DDX54Q8TDD1 881 aaKnown RBP23.04■■□□□ 1.28
LIG1-205ENST00000593425 SGIP1Q9BQI5 828 aa23.04■■□□□ 1.28
LIG1-205ENST00000593425 LRRC4BQ9NT99 713 aa23.04■■□□□ 1.28
LIG1-205ENST00000593425 QSER1Q2KHR3 1735 aa23.03■■□□□ 1.28
LIG1-205ENST00000593425 FHDC1Q9C0D6 1143 aaPredicted RBP23.02■■□□□ 1.28
LIG1-205ENST00000593425 MEGF6O75095 1541 aa23.02■■□□□ 1.28
LIG1-205ENST00000593425 TUBGCP6Q96RT7 1819 aa23.01■■□□□ 1.27
LIG1-205ENST00000593425 LY75O60449 1722 aa23.01■■□□□ 1.27
LIG1-205ENST00000593425 AMPHP49418 695 aa23■■□□□ 1.27
LIG1-205ENST00000593425 SYT17Q9BSW7 474 aa23■■□□□ 1.27
LIG1-205ENST00000593425 KIF20BQ96Q89 1820 aa23■■□□□ 1.27
LIG1-205ENST00000593425 RTL1A6NKG5 1358 aa22.99■■□□□ 1.27
LIG1-205ENST00000593425 NSD2O96028 1365 aa22.98■■□□□ 1.27
LIG1-205ENST00000593425 USP47Q96K76 1375 aa22.98■■□□□ 1.27
LIG1-205ENST00000593425 SLC24A1O60721 1099 aa22.97■■□□□ 1.27
LIG1-205ENST00000593425 RRS1Q15050 365 aaKnown RBP22.97■■□□□ 1.27
LIG1-205ENST00000593425 AKT1S1Q96B36 256 aa22.97■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms