RNA–Protein interactions for RNA: ENST00000590347.5

CIRBP-228, Transcript of cold inducible RNA binding protein, humanhuman

TSL 2

Gene CIRBP, Length 3,117 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIRBP-228ENST00000590347 SAFB2Q14151 953 aaKnown RBP eCLIP18.58■□□□□ 0.57
CIRBP-228ENST00000590347 CHD1LQ86WJ1 897 aa18.58■□□□□ 0.57
CIRBP-228ENST00000590347 SPC24Q8NBT2 197 aa18.58■□□□□ 0.57
CIRBP-228ENST00000590347 ZDHHC9Q9Y397 364 aa18.58■□□□□ 0.57
CIRBP-228ENST00000590347 SSH1Q8WYL5 1049 aa18.58■□□□□ 0.56
CIRBP-228ENST00000590347 MLECQ14165 292 aa18.58■□□□□ 0.56
CIRBP-228ENST00000590347 MCM5P33992 734 aa18.56■□□□□ 0.56
CIRBP-228ENST00000590347 IBTKQ9P2D0 1353 aaPredicted RBP18.56■□□□□ 0.56
CIRBP-228ENST00000590347 ABCA9Q8IUA7 1624 aa18.55■□□□□ 0.56
CIRBP-228ENST00000590347 SMARCA5O60264 1052 aaPredicted RBP18.55■□□□□ 0.56
CIRBP-228ENST00000590347 TAF7LQ5H9L4 462 aa18.54■□□□□ 0.56
CIRBP-228ENST00000590347 CARD14Q9BXL6 1004 aa18.54■□□□□ 0.56
CIRBP-228ENST00000590347 TSPY26PQ9H489 355 aa18.54■□□□□ 0.56
CIRBP-228ENST00000590347 NINLQ9Y2I6 1382 aa18.54■□□□□ 0.56
CIRBP-228ENST00000590347 TRPM1Q7Z4N2 1603 aa18.54■□□□□ 0.56
CIRBP-228ENST00000590347 GADD45BO75293 160 aaPredicted RBP18.54■□□□□ 0.56
CIRBP-228ENST00000590347 ADCY5O95622 1261 aa18.54■□□□□ 0.56
CIRBP-228ENST00000590347 NUCB1Q02818 461 aa18.54■□□□□ 0.56
CIRBP-228ENST00000590347 PIBF1Q8WXW3 757 aa18.54■□□□□ 0.56
CIRBP-228ENST00000590347 CHMP4CQ96CF2 233 aa18.54■□□□□ 0.56
CIRBP-228ENST00000590347 PYCARDQ9ULZ3 195 aa18.53■□□□□ 0.56
CIRBP-228ENST00000590347 NUCB2P80303 420 aa18.53■□□□□ 0.56
CIRBP-228ENST00000590347 PRIMPOLQ96LW4 560 aa18.53■□□□□ 0.56
CIRBP-228ENST00000590347 GPRASP1Q5JY77 1395 aa18.52■□□□□ 0.56
CIRBP-228ENST00000590347 HMGN5P82970 282 aaKnown RBP18.52■□□□□ 0.56
CIRBP-228ENST00000590347 ZNF518AQ6AHZ1 1483 aa18.52■□□□□ 0.56
CIRBP-228ENST00000590347 NOL12Q9UGY1 213 aaKnown RBP eCLIP18.52■□□□□ 0.561e-9■□□□□ 8.6
CIRBP-228ENST00000590347 V9GYY5 206 aaPredicted RBP18.52■□□□□ 0.56
CIRBP-228ENST00000590347 HCLS1P14317 486 aaPredicted RBP18.52■□□□□ 0.55
CIRBP-228ENST00000590347 HDAC1Q13547 482 aaPredicted RBP18.52■□□□□ 0.55
CIRBP-228ENST00000590347 ST7Q9NRC1 585 aa18.51■□□□□ 0.55
CIRBP-228ENST00000590347 DDX19BQ9UMR2 479 aa18.51■□□□□ 0.55
CIRBP-228ENST00000590347 U2AF1L5P0DN76 240 aaPredicted RBP18.5■□□□□ 0.55
CIRBP-228ENST00000590347 U2AF1Q01081 240 aaKnown RBP eCLIP18.5■□□□□ 0.557e-7■■■■□ 23.3
CIRBP-228ENST00000590347 CLTCL1P53675 1640 aa18.5■□□□□ 0.55
CIRBP-228ENST00000590347 C16orf71Q8IYS4 520 aaPredicted RBP18.5■□□□□ 0.55
CIRBP-228ENST00000590347 RUNDC1Q96C34 613 aa18.5■□□□□ 0.55
CIRBP-228ENST00000590347 STK26Q9P289 416 aa18.5■□□□□ 0.55
CIRBP-228ENST00000590347 ATF7IPQ6VMQ6 1270 aa18.49■□□□□ 0.55
CIRBP-228ENST00000590347 TRIM6-TRIM34B2RNG4 842 aa18.48■□□□□ 0.55
CIRBP-228ENST00000590347 ELL2O00472 640 aaPredicted RBP18.48■□□□□ 0.55
CIRBP-228ENST00000590347 NPHP1O15259 732 aa18.48■□□□□ 0.55
CIRBP-228ENST00000590347 BMP2KLQ5H9B9 411 aa18.48■□□□□ 0.55
CIRBP-228ENST00000590347 FBXO31Q5XUX0 539 aaPredicted RBP18.48■□□□□ 0.55
CIRBP-228ENST00000590347 MORC1Q86VD1 984 aa18.48■□□□□ 0.55
CIRBP-228ENST00000590347 TRIM34Q9BYJ4 488 aa18.48■□□□□ 0.55
CIRBP-228ENST00000590347 PRDM15P57071 1507 aaPredicted RBP18.48■□□□□ 0.55
CIRBP-228ENST00000590347 PTPRTO14522 1441 aa18.48■□□□□ 0.55
CIRBP-228ENST00000590347 CYP2E1P05181 493 aaPredicted RBP18.48■□□□□ 0.55
CIRBP-228ENST00000590347 INO80Q9ULG1 1556 aaPredicted RBP18.48■□□□□ 0.55
CIRBP-228ENST00000590347 POGZQ7Z3K3 1410 aa18.48■□□□□ 0.55
CIRBP-228ENST00000590347 ARAP3Q8WWN8 1544 aa18.47■□□□□ 0.55
CIRBP-228ENST00000590347 CLEC17AQ6ZS10 378 aa18.47■□□□□ 0.55
CIRBP-228ENST00000590347 NOS1P29475 1434 aa18.47■□□□□ 0.55
CIRBP-228ENST00000590347 ZBTB40Q9NUA8 1239 aa18.47■□□□□ 0.55
CIRBP-228ENST00000590347 KIDINS220Q9ULH0 1771 aa18.46■□□□□ 0.55
CIRBP-228ENST00000590347 U2SURPO15042 1029 aaKnown RBP18.46■□□□□ 0.55
CIRBP-228ENST00000590347 OTUD7AQ8TE49 926 aaPredicted RBP18.46■□□□□ 0.55
CIRBP-228ENST00000590347 PIK3C2GO75747 1445 aa18.46■□□□□ 0.55
CIRBP-228ENST00000590347 YEATS2Q9ULM3 1422 aa18.46■□□□□ 0.55
CIRBP-228ENST00000590347 FKBP5Q13451 457 aaPredicted RBP18.46■□□□□ 0.55
CIRBP-228ENST00000590347 PLPPR3Q6T4P5 718 aa18.46■□□□□ 0.55
CIRBP-228ENST00000590347 C16orf45Q96MC5 204 aaPredicted RBP18.46■□□□□ 0.55
CIRBP-228ENST00000590347 ATAD2Q6PL18 1390 aa18.45■□□□□ 0.54
CIRBP-228ENST00000590347 GSPT1P15170 499 aaKnown RBP18.45■□□□□ 0.54
CIRBP-228ENST00000590347 NPATQ14207 1427 aa18.45■□□□□ 0.54
CIRBP-228ENST00000590347 ZMYM3Q14202 1370 aa18.45■□□□□ 0.54
CIRBP-228ENST00000590347 TRPM2O94759 1503 aa18.45■□□□□ 0.54
CIRBP-228ENST00000590347 MTHFSP49914 203 aa18.45■□□□□ 0.54
CIRBP-228ENST00000590347 CHAF1AQ13111 956 aaPredicted RBP18.45■□□□□ 0.54
CIRBP-228ENST00000590347 ZNF592Q92610 1267 aa18.45■□□□□ 0.54
CIRBP-228ENST00000590347 GTF2F1P35269 517 aaKnown RBP eCLIP18.45■□□□□ 0.542e-6■□□□□ 11.1
CIRBP-228ENST00000590347 ASXL1Q8IXJ9 1541 aa18.44■□□□□ 0.54
CIRBP-228ENST00000590347 SLFN14P0C7P3 912 aa18.44■□□□□ 0.54
CIRBP-228ENST00000590347 NCBP1Q09161 790 aaKnown RBP18.44■□□□□ 0.54
CIRBP-228ENST00000590347 IDI1Q13907 227 aa18.44■□□□□ 0.54
CIRBP-228ENST00000590347 TMX1Q9H3N1 280 aa18.43■□□□□ 0.54
CIRBP-228ENST00000590347 CDC45O75419 566 aa18.43■□□□□ 0.54
CIRBP-228ENST00000590347 CAPN2P17655 700 aa18.43■□□□□ 0.54
CIRBP-228ENST00000590347 KCNF1Q9H3M0 494 aa18.43■□□□□ 0.54
CIRBP-228ENST00000590347 RABEP1Q15276 862 aa18.42■□□□□ 0.54
CIRBP-228ENST00000590347 AP5Z1O43299 807 aa18.42■□□□□ 0.54
CIRBP-228ENST00000590347 SLC12A5Q9H2X9 1139 aa18.41■□□□□ 0.54
CIRBP-228ENST00000590347 CHMP3Q9Y3E7 222 aa18.41■□□□□ 0.54
CIRBP-228ENST00000590347 MROH1Q8NDA8 1641 aa18.41■□□□□ 0.54
CIRBP-228ENST00000590347 LARP6Q9BRS8 491 aaKnown RBP18.4■□□□□ 0.54
CIRBP-228ENST00000590347 SPHKAPQ2M3C7 1700 aa18.4■□□□□ 0.54
CIRBP-228ENST00000590347 OGFRQ9NZT2 677 aa18.4■□□□□ 0.54
CIRBP-228ENST00000590347 STAG3Q9UJ98 1225 aa18.4■□□□□ 0.54
CIRBP-228ENST00000590347 SCAF11Q99590 1463 aaKnown RBP18.4■□□□□ 0.54
CIRBP-228ENST00000590347 NEK4P51957 841 aa18.4■□□□□ 0.54
CIRBP-228ENST00000590347 ANKRD7Q92527 254 aa18.4■□□□□ 0.54
CIRBP-228ENST00000590347 LRMPQ12912 555 aa18.39■□□□□ 0.53
CIRBP-228ENST00000590347 WDR63Q8IWG1 891 aa18.39■□□□□ 0.53
CIRBP-228ENST00000590347 TET3O43151 1660 aa18.39■□□□□ 0.53
CIRBP-228ENST00000590347 SRPK2P78362 688 aaKnown RBP18.38■□□□□ 0.53
CIRBP-228ENST00000590347 GIMAP6Q6P9H5 292 aa18.38■□□□□ 0.53
CIRBP-228ENST00000590347 CTNNA3Q9UI47 895 aa18.38■□□□□ 0.53
CIRBP-228ENST00000590347 MADDQ8WXG6 1647 aa18.38■□□□□ 0.53
CIRBP-228ENST00000590347 USP48Q86UV5 1035 aa18.38■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 65.3 ms