RNA–Protein interactions for RNA: ENST00000588857.5

ATG4D-209, Transcript of autophagy related 4D cysteine peptidase, humanhuman

TSL 1 (best)

Gene ATG4D, Length 1,555 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4D-209ENST00000588857 ZBED9Q6R2W3 1325 aa29.57■■■□□ 2.32
ATG4D-209ENST00000588857 ARHGEF10O15013 1369 aa29.57■■■□□ 2.32
ATG4D-209ENST00000588857 NFAT5O94916 1531 aa29.56■■■□□ 2.32
ATG4D-209ENST00000588857 USP19O94966 1318 aa29.56■■■□□ 2.32
ATG4D-209ENST00000588857 FLT4P35916 1363 aa29.55■■■□□ 2.32
ATG4D-209ENST00000588857 KIF24Q5T7B8 1368 aa29.55■■■□□ 2.32
ATG4D-209ENST00000588857 POTEAQ6S8J7 498 aa29.55■■■□□ 2.32
ATG4D-209ENST00000588857 PLEKHG5O94827 1062 aa29.54■■■□□ 2.32
ATG4D-209ENST00000588857 GCP02774 474 aa29.54■■■□□ 2.32
ATG4D-209ENST00000588857 CCDC146Q8IYE0 955 aa29.52■■■□□ 2.32
ATG4D-209ENST00000588857 IL13P35225 146 aa29.52■■■□□ 2.32
ATG4D-209ENST00000588857 HSP90AB2PQ58FF8 381 aa29.51■■■□□ 2.31
ATG4D-209ENST00000588857 SENP3-EIF4A1A0A087X0R7 540 aa29.5■■■□□ 2.31
ATG4D-209ENST00000588857 PHRF1Q9P1Y6 1649 aaKnown RBP29.5■■■□□ 2.31
ATG4D-209ENST00000588857 RTL1A6NKG5 1358 aa29.49■■■□□ 2.31
ATG4D-209ENST00000588857 SOCS7O14512 581 aa29.49■■■□□ 2.31
ATG4D-209ENST00000588857 ZNF772Q68DY9 489 aaPredicted RBP29.49■■■□□ 2.31
ATG4D-209ENST00000588857 ADAMTS2O95450 1211 aa29.48■■■□□ 2.31
ATG4D-209ENST00000588857 RUNDC1Q96C34 613 aa29.48■■■□□ 2.31
ATG4D-209ENST00000588857 PNNQ9H307 717 aaKnown RBP29.47■■■□□ 2.31
ATG4D-209ENST00000588857 HOXC9P31274 260 aa29.47■■■□□ 2.31
ATG4D-209ENST00000588857 EIF4A2Q14240 407 aaKnown RBP29.47■■■□□ 2.31
ATG4D-209ENST00000588857 C8orf37Q96NL8 207 aa29.47■■■□□ 2.31
ATG4D-209ENST00000588857 CRYBG1Q9Y4K1 1723 aa29.46■■■□□ 2.31
ATG4D-209ENST00000588857 ZBTB7CA1YPR0 619 aa29.45■■■□□ 2.31
ATG4D-209ENST00000588857 SALL2Q9Y467 1007 aaPredicted RBP29.45■■■□□ 2.31
ATG4D-209ENST00000588857 AFF2P51816 1311 aa29.44■■■□□ 2.3
ATG4D-209ENST00000588857 FCHSD2O94868 740 aa29.43■■■□□ 2.3
ATG4D-209ENST00000588857 ARHGEF25Q86VW2 580 aa29.43■■■□□ 2.3
ATG4D-209ENST00000588857 IP6K1Q92551 441 aa29.43■■■□□ 2.3
ATG4D-209ENST00000588857 COL22A1Q8NFW1 1626 aaPredicted RBP29.43■■■□□ 2.3
ATG4D-209ENST00000588857 APAF1O14727 1248 aa29.43■■■□□ 2.3
ATG4D-209ENST00000588857 NGLY1Q96IV0 654 aa29.43■■■□□ 2.3
ATG4D-209ENST00000588857 CABLES1Q8TDN4 633 aa29.42■■■□□ 2.3
ATG4D-209ENST00000588857 RGPD1P0DJD0 1748 aa29.4■■■□□ 2.3
ATG4D-209ENST00000588857 NGEFQ8N5V2 710 aa29.39■■■□□ 2.3
ATG4D-209ENST00000588857 MAPK8IP3Q9UPT6 1336 aa29.39■■■□□ 2.3
ATG4D-209ENST00000588857 HMOX1P09601 288 aa29.39■■■□□ 2.29
ATG4D-209ENST00000588857 ZC3H6P61129 1189 aaKnown RBP29.39■■■□□ 2.29
ATG4D-209ENST00000588857 NEFMP07197 916 aa29.38■■■□□ 2.29
ATG4D-209ENST00000588857 PLEKHF1Q96S99 279 aa29.38■■■□□ 2.29
ATG4D-209ENST00000588857 TCP11L2Q8N4U5 519 aa29.37■■■□□ 2.29
ATG4D-209ENST00000588857 RSPH6AQ9H0K4 717 aa29.37■■■□□ 2.29
ATG4D-209ENST00000588857 HAP1P54257 671 aaPredicted RBP29.36■■■□□ 2.29
ATG4D-209ENST00000588857 FNBP4Q8N3X1 1017 aaPredicted RBP29.36■■■□□ 2.29
ATG4D-209ENST00000588857 ABCA3Q99758 1704 aa29.36■■■□□ 2.29
ATG4D-209ENST00000588857 PRKAR2BP31323 418 aa29.35■■■□□ 2.29
ATG4D-209ENST00000588857 LTV1Q96GA3 475 aaPredicted RBP29.35■■■□□ 2.29
ATG4D-209ENST00000588857 RGPD5Q99666 1765 aa29.34■■■□□ 2.29
ATG4D-209ENST00000588857 SULT6B1Q6IMI4 303 aa29.33■■■□□ 2.29
ATG4D-209ENST00000588857 QTRT2Q9H974 415 aaKnown RBP29.32■■■□□ 2.28
ATG4D-209ENST00000588857 CPDO75976 1380 aa29.32■■■□□ 2.28
ATG4D-209ENST00000588857 PDE3BQ13370 1112 aa29.31■■■□□ 2.28
ATG4D-209ENST00000588857 EYA1Q99502 592 aa29.31■■■□□ 2.28
ATG4D-209ENST00000588857 USP21Q9UK80 565 aa29.31■■■□□ 2.28
ATG4D-209ENST00000588857 RXRBP28702 533 aa29.3■■■□□ 2.28
ATG4D-209ENST00000588857 ABCC6O95255 1503 aa29.3■■■□□ 2.28
ATG4D-209ENST00000588857 IGSF1Q8N6C5 1336 aa29.3■■■□□ 2.28
ATG4D-209ENST00000588857 NEUROD2Q15784 382 aa29.3■■■□□ 2.28
ATG4D-209ENST00000588857 RRP7AQ9Y3A4 280 aaKnown RBP29.3■■■□□ 2.28
ATG4D-209ENST00000588857 COL18A1P39060 1754 aa29.3■■■□□ 2.28
ATG4D-209ENST00000588857 KIAA0232Q92628 1395 aa29.29■■■□□ 2.28
ATG4D-209ENST00000588857 AEBP1Q8IUX7 1158 aa29.29■■■□□ 2.28
ATG4D-209ENST00000588857 NCBP3Q53F19 620 aaKnown RBP29.28■■■□□ 2.28
ATG4D-209ENST00000588857 RGPD2P0DJD1 1756 aa29.27■■■□□ 2.28
ATG4D-209ENST00000588857 AXIN2Q9Y2T1 843 aa29.26■■■□□ 2.28
ATG4D-209ENST00000588857 TMPOP42166 694 aaKnown RBP29.26■■■□□ 2.27
ATG4D-209ENST00000588857 ANKRD24Q8TF21 1146 aa29.26■■■□□ 2.27
ATG4D-209ENST00000588857 ZNF521Q96K83 1311 aa29.25■■■□□ 2.27
ATG4D-209ENST00000588857 PRDM11Q9NQV5 511 aa29.25■■■□□ 2.27
ATG4D-209ENST00000588857 KDRP35968 1356 aa29.25■■■□□ 2.27
ATG4D-209ENST00000588857 RBM6P78332 1123 aaKnown RBP29.24■■■□□ 2.27
ATG4D-209ENST00000588857 CHRNA2Q15822 529 aa29.24■■■□□ 2.27
ATG4D-209ENST00000588857 PHACTR3Q96KR7 559 aa29.24■■■□□ 2.27
ATG4D-209ENST00000588857 CCDC27Q2M243 656 aa29.23■■■□□ 2.27
ATG4D-209ENST00000588857 TRPC5Q9UL62 973 aaPredicted RBP29.23■■■□□ 2.27
ATG4D-209ENST00000588857 WWC1Q8IX03 1113 aa29.22■■■□□ 2.27
ATG4D-209ENST00000588857 GOLGA2Q08379 1002 aa29.22■■■□□ 2.27
ATG4D-209ENST00000588857 BCL9LQ86UU0 1499 aa29.21■■■□□ 2.27
ATG4D-209ENST00000588857 RIPK4P57078 832 aa29.21■■■□□ 2.27
ATG4D-209ENST00000588857 NFE2L2Q16236 605 aa29.21■■■□□ 2.27
ATG4D-209ENST00000588857 ERBB3P21860 1342 aa29.2■■■□□ 2.27
ATG4D-209ENST00000588857 FAM208AQ9UK61 1670 aaKnown RBP29.2■■■□□ 2.27
ATG4D-209ENST00000588857 DLG5Q8TDM6 1919 aa29.2■■■□□ 2.27
ATG4D-209ENST00000588857 NBPF6Q5VWK0 638 aa29.2■■■□□ 2.26
ATG4D-209ENST00000588857 NBPF4Q96M43 638 aa29.2■■■□□ 2.26
ATG4D-209ENST00000588857 CDCA7LQ96GN5 454 aa29.19■■■□□ 2.26
ATG4D-209ENST00000588857 FAM83GA6ND36 823 aa29.18■■■□□ 2.26
ATG4D-209ENST00000588857 UNC5CLQ8IV45 518 aa29.18■■■□□ 2.26
ATG4D-209ENST00000588857 SLIT2O94813 1529 aa29.18■■■□□ 2.26
ATG4D-209ENST00000588857 ATRNO75882 1429 aa29.17■■■□□ 2.26
ATG4D-209ENST00000588857 USHBP1Q8N6Y0 703 aa29.17■■■□□ 2.26
ATG4D-209ENST00000588857 LMO7Q8WWI1 1683 aa29.17■■■□□ 2.26
ATG4D-209ENST00000588857 CAMTA1Q9Y6Y1 1673 aa29.17■■■□□ 2.26
ATG4D-209ENST00000588857 CSB-PGBD3P0DP91 1061 aa29.16■■■□□ 2.26
ATG4D-209ENST00000588857 WDR63Q8IWG1 891 aa29.15■■■□□ 2.26
ATG4D-209ENST00000588857 TRIM35Q9UPQ4 493 aa29.14■■■□□ 2.26
ATG4D-209ENST00000588857 NLRP2Q9NX02 1062 aa29.13■■■□□ 2.25
ATG4D-209ENST00000588857 E9PSI1 815 aa29.12■■■□□ 2.25
ATG4D-209ENST00000588857 LMOD3Q0VAK6 560 aa29.12■■■□□ 2.25
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms