RNA–Protein interactions for RNA: ENST00000581570.5

SS18-219, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 571 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-219ENST00000581570 CDCA7Q9BWT1 371 aaPredicted RBP18.54■□□□□ 0.56
SS18-219ENST00000581570 STK32BQ9NY57 414 aa18.54■□□□□ 0.56
SS18-219ENST00000581570 CABP1Q9NZU7 370 aa18.53■□□□□ 0.56
SS18-219ENST00000581570 AXIN2Q9Y2T1 843 aa18.53■□□□□ 0.56
SS18-219ENST00000581570 WDR17Q8IZU2 1322 aa18.52■□□□□ 0.56
SS18-219ENST00000581570 TXNRD1Q16881 649 aa18.52■□□□□ 0.56
SS18-219ENST00000581570 NBPF1Q3BBV0 1214 aa18.52■□□□□ 0.56
SS18-219ENST00000581570 SYT17Q9BSW7 474 aa18.52■□□□□ 0.56
SS18-219ENST00000581570 FHDC1Q9C0D6 1143 aaPredicted RBP18.52■□□□□ 0.56
SS18-219ENST00000581570 RGPD3A6NKT7 1758 aaPredicted RBP18.52■□□□□ 0.55
SS18-219ENST00000581570 RGPD4Q7Z3J3 1758 aa18.52■□□□□ 0.55
SS18-219ENST00000581570 BCL9O00512 1426 aa18.51■□□□□ 0.55
SS18-219ENST00000581570 CASZ1Q86V15 1759 aa18.51■□□□□ 0.55
SS18-219ENST00000581570 SLC15A2Q16348 729 aa18.51■□□□□ 0.55
SS18-219ENST00000581570 CENPJQ9HC77 1338 aaPredicted RBP18.5■□□□□ 0.55
SS18-219ENST00000581570 LRRC37A3O60309 1634 aa18.5■□□□□ 0.55
SS18-219ENST00000581570 USP6P35125 1406 aa18.49■□□□□ 0.55
SS18-219ENST00000581570 MTFR1LQ9H019 292 aa18.49■□□□□ 0.55
SS18-219ENST00000581570 SBF2Q86WG5 1849 aa18.49■□□□□ 0.55
SS18-219ENST00000581570 EXOC5O00471 708 aa18.48■□□□□ 0.55
SS18-219ENST00000581570 CSB-PGBD3P0DP91 1061 aa18.48■□□□□ 0.55
SS18-219ENST00000581570 CARD10Q9BWT7 1032 aa18.48■□□□□ 0.55
SS18-219ENST00000581570 SLIT3O75094 1523 aa18.48■□□□□ 0.55
SS18-219ENST00000581570 ARHGEF25Q86VW2 580 aa18.47■□□□□ 0.55
SS18-219ENST00000581570 SENP3-EIF4A1A0A087X0R7 540 aa18.46■□□□□ 0.55
SS18-219ENST00000581570 MYOM1P52179 1685 aa18.46■□□□□ 0.55
SS18-219ENST00000581570 KCNH5Q8NCM2 988 aa18.45■□□□□ 0.54
SS18-219ENST00000581570 SGIP1Q9BQI5 828 aa18.45■□□□□ 0.54
SS18-219ENST00000581570 CPSF1Q10570 1443 aaKnown RBP18.44■□□□□ 0.54
SS18-219ENST00000581570 SOX12O15370 315 aa18.44■□□□□ 0.54
SS18-219ENST00000581570 C1QTNF8P60827 252 aa18.44■□□□□ 0.54
SS18-219ENST00000581570 ARXQ96QS3 562 aa18.43■□□□□ 0.54
SS18-219ENST00000581570 KIAA1210Q9ULL0 1709 aa18.43■□□□□ 0.54
SS18-219ENST00000581570 COL18A1P39060 1754 aa18.42■□□□□ 0.54
SS18-219ENST00000581570 ZNF692Q9BU19 519 aaPredicted RBP18.42■□□□□ 0.54
SS18-219ENST00000581570 TTC21BQ7Z4L5 1316 aa18.42■□□□□ 0.54
SS18-219ENST00000581570 ACSBG1Q96GR2 724 aa18.41■□□□□ 0.54
SS18-219ENST00000581570 CCDC7Q96M83 1385 aa18.41■□□□□ 0.54
SS18-219ENST00000581570 EVC2Q86UK5 1308 aa18.4■□□□□ 0.54
SS18-219ENST00000581570 GPR162Q16538 588 aa18.38■□□□□ 0.53
SS18-219ENST00000581570 PIK3C2AO00443 1686 aa18.38■□□□□ 0.53
SS18-219ENST00000581570 TTC21AQ8NDW8 1320 aa18.37■□□□□ 0.53
SS18-219ENST00000581570 MAP3K5Q99683 1374 aa18.37■□□□□ 0.53
SS18-219ENST00000581570 TNS2Q63HR2 1409 aa18.37■□□□□ 0.53
SS18-219ENST00000581570 AKAP12Q02952 1782 aa18.37■□□□□ 0.53
SS18-219ENST00000581570 WNK3Q9BYP7 1800 aa18.37■□□□□ 0.53
SS18-219ENST00000581570 UTRNP46939 3433 aa18.35■□□□□ 0.53
SS18-219ENST00000581570 ZNF827Q17R98 1081 aa18.34■□□□□ 0.53
SS18-219ENST00000581570 NLRP2Q9NX02 1062 aa18.34■□□□□ 0.53
SS18-219ENST00000581570 IL2RBP14784 551 aa18.33■□□□□ 0.52
SS18-219ENST00000581570 QRICH2Q9H0J4 1663 aa18.33■□□□□ 0.52
SS18-219ENST00000581570 GIGYF1O75420 1035 aaPredicted RBP18.32■□□□□ 0.52
SS18-219ENST00000581570 KLHL34Q8N239 644 aa18.32■□□□□ 0.52
SS18-219ENST00000581570 LRRC4BQ9NT99 713 aa18.32■□□□□ 0.52
SS18-219ENST00000581570 SLC16A10Q8TF71 515 aa18.31■□□□□ 0.52
SS18-219ENST00000581570 NFAT5O94916 1531 aa18.31■□□□□ 0.52
SS18-219ENST00000581570 RGPD5Q99666 1765 aa18.31■□□□□ 0.52
SS18-219ENST00000581570 CHD4Q14839 1912 aa18.31■□□□□ 0.52
SS18-219ENST00000581570 TRPM1Q7Z4N2 1603 aa18.31■□□□□ 0.52
SS18-219ENST00000581570 KTN1Q86UP2 1357 aaKnown RBP18.3■□□□□ 0.52
SS18-219ENST00000581570 ERBB3P21860 1342 aa18.3■□□□□ 0.52
SS18-219ENST00000581570 POLD1P28340 1107 aa18.3■□□□□ 0.52
SS18-219ENST00000581570 PELP1Q8IZL8 1130 aaKnown RBP18.3■□□□□ 0.52
SS18-219ENST00000581570 NHSQ6T4R5 1651 aa18.3■□□□□ 0.52
SS18-219ENST00000581570 AKT1S1Q96B36 256 aa18.29■□□□□ 0.52
SS18-219ENST00000581570 PAPPAQ13219 1627 aa18.28■□□□□ 0.52
SS18-219ENST00000581570 IFFO2Q5TF58 517 aa18.28■□□□□ 0.52
SS18-219ENST00000581570 SUGP2Q8IX01 1082 aaKnown RBP eCLIP18.28■□□□□ 0.52
SS18-219ENST00000581570 ABCC6O95255 1503 aa18.28■□□□□ 0.52
SS18-219ENST00000581570 SLC27A3Q5K4L6 730 aa18.27■□□□□ 0.52
SS18-219ENST00000581570 ANKRD24Q8TF21 1146 aa18.27■□□□□ 0.52
SS18-219ENST00000581570 L3MBTL2Q969R5 705 aa18.27■□□□□ 0.52
SS18-219ENST00000581570 USP31Q70CQ4 1352 aa18.26■□□□□ 0.51
SS18-219ENST00000581570 NME9Q86XW9 330 aa18.25■□□□□ 0.51
SS18-219ENST00000581570 DDX54Q8TDD1 881 aaKnown RBP18.25■□□□□ 0.51
SS18-219ENST00000581570 TFCP2L1Q9NZI6 479 aa18.25■□□□□ 0.51
SS18-219ENST00000581570 PNPLA7Q6ZV29 1317 aa18.24■□□□□ 0.51
SS18-219ENST00000581570 NLGN2Q8NFZ4 835 aa18.23■□□□□ 0.51
SS18-219ENST00000581570 BTAF1O14981 1849 aa18.22■□□□□ 0.51
SS18-219ENST00000581570 KCNQ4P56696 695 aa18.22■□□□□ 0.51
SS18-219ENST00000581570 ROCK2O75116 1388 aaKnown RBP18.21■□□□□ 0.51
SS18-219ENST00000581570 GRIN3BO60391 1043 aa18.21■□□□□ 0.51
SS18-219ENST00000581570 SYTL4Q96C24 671 aaPredicted RBP18.2■□□□□ 0.5
SS18-219ENST00000581570 PRIM1P49642 420 aaKnown RBP18.19■□□□□ 0.5
SS18-219ENST00000581570 TMC1Q8TDI8 760 aa18.19■□□□□ 0.5
SS18-219ENST00000581570 SBNO2Q9Y2G9 1366 aa18.18■□□□□ 0.5
SS18-219ENST00000581570 YBX3P16989 372 aaKnown RBP eCLIP18.18■□□□□ 0.5
SS18-219ENST00000581570 HDGFL2Q7Z4V5 671 aaPredicted RBP18.18■□□□□ 0.5
SS18-219ENST00000581570 LTV1Q96GA3 475 aaPredicted RBP18.18■□□□□ 0.5
SS18-219ENST00000581570 IP6K1Q92551 441 aa18.17■□□□□ 0.5
SS18-219ENST00000581570 KAT6BQ8WYB5 2073 aa18.16■□□□□ 0.5
SS18-219ENST00000581570 SIN3AQ96ST3 1273 aa18.15■□□□□ 0.5
SS18-219ENST00000581570 SLC12A5Q9H2X9 1139 aa18.15■□□□□ 0.5
SS18-219ENST00000581570 CCNL1Q9UK58 526 aaPredicted RBP18.15■□□□□ 0.5
SS18-219ENST00000581570 ANKRD36BQ8N2N9 1353 aa18.15■□□□□ 0.5
SS18-219ENST00000581570 CD163L1Q9NR16 1453 aa18.14■□□□□ 0.5
SS18-219ENST00000581570 COL23A1Q86Y22 540 aaPredicted RBP18.14■□□□□ 0.49
SS18-219ENST00000581570 MON2Q7Z3U7 1717 aa18.14■□□□□ 0.49
SS18-219ENST00000581570 SHANK3Q9BYB0 1731 aa18.14■□□□□ 0.49
SS18-219ENST00000581570 QSER1Q2KHR3 1735 aa18.13■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 70.4 ms