RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 RGS3P49796 1198 aa26.03■■□□□ 1.76
CLN3-230ENST00000568076 NPM2Q86SE8 214 aaKnown RBP26.02■■□□□ 1.76
CLN3-230ENST00000568076 DZIP1LQ8IYY4 767 aaKnown RBP26.02■■□□□ 1.76
CLN3-230ENST00000568076 PAK3O75914 559 aaPredicted RBP26.02■■□□□ 1.76
CLN3-230ENST00000568076 TRIM27P14373 513 aa26.02■■□□□ 1.76
CLN3-230ENST00000568076 KCNA6P17658 529 aa26.02■■□□□ 1.76
CLN3-230ENST00000568076 MYT1Q01538 1121 aa26.02■■□□□ 1.76
CLN3-230ENST00000568076 EIF4A2Q14240 407 aaKnown RBP26.02■■□□□ 1.76
CLN3-230ENST00000568076 RIMS1Q86UR5 1692 aaKnown RBP26.01■■□□□ 1.76
CLN3-230ENST00000568076 PEAK1Q9H792 1746 aa26.01■■□□□ 1.75
CLN3-230ENST00000568076 RGPD8O14715 1765 aaPredicted RBP26.01■■□□□ 1.75
CLN3-230ENST00000568076 FTSJ3Q8IY81 847 aaKnown RBP26■■□□□ 1.75
CLN3-230ENST00000568076 LAS1LQ9Y4W2 734 aaKnown RBP26■■□□□ 1.75
CLN3-230ENST00000568076 NOB1Q9ULX3 412 aaKnown RBP25.99■■□□□ 1.75
CLN3-230ENST00000568076 C8orf34Q49A92 452 aa25.98■■□□□ 1.75
CLN3-230ENST00000568076 DLG5Q8TDM6 1919 aa25.98■■□□□ 1.75
CLN3-230ENST00000568076 TTC21AQ8NDW8 1320 aa25.98■■□□□ 1.75
CLN3-230ENST00000568076 ATF7IPQ6VMQ6 1270 aa25.98■■□□□ 1.75
CLN3-230ENST00000568076 AEBP1Q8IUX7 1158 aa25.98■■□□□ 1.75
CLN3-230ENST00000568076 PIK3R4Q99570 1358 aa25.97■■□□□ 1.75
CLN3-230ENST00000568076 ZNF853P0CG23 659 aa25.97■■□□□ 1.75
CLN3-230ENST00000568076 CALD1Q05682 793 aaKnown RBP25.96■■□□□ 1.75
CLN3-230ENST00000568076 FAM161AQ3B820 660 aa25.96■■□□□ 1.75
CLN3-230ENST00000568076 IFT57Q9NWB7 429 aa25.96■■□□□ 1.75
CLN3-230ENST00000568076 ALDH1L2Q3SY69 923 aa25.96■■□□□ 1.75
CLN3-230ENST00000568076 HSP90AB2PQ58FF8 381 aa25.96■■□□□ 1.75
CLN3-230ENST00000568076 NGDNQ8NEJ9 315 aaKnown RBP25.95■■□□□ 1.75
CLN3-230ENST00000568076 FAM83GA6ND36 823 aa25.94■■□□□ 1.74
CLN3-230ENST00000568076 GNAI1P63096 354 aa25.94■■□□□ 1.74
CLN3-230ENST00000568076 SULT6B1Q6IMI4 303 aa25.94■■□□□ 1.74
CLN3-230ENST00000568076 SOX12O15370 315 aa25.93■■□□□ 1.74
CLN3-230ENST00000568076 MBIPQ9NS73 344 aa25.93■■□□□ 1.74
CLN3-230ENST00000568076 KIF16BQ96L93 1317 aa25.93■■□□□ 1.74
CLN3-230ENST00000568076 ANKARQ7Z5J8 1434 aa25.93■■□□□ 1.74
CLN3-230ENST00000568076 RGPD1P0DJD0 1748 aa25.93■■□□□ 1.74
CLN3-230ENST00000568076 LMOD3Q0VAK6 560 aa25.93■■□□□ 1.74
CLN3-230ENST00000568076 VAMP4O75379 141 aa25.92■■□□□ 1.74
CLN3-230ENST00000568076 TSPYL6Q8N831 410 aa25.92■■□□□ 1.74
CLN3-230ENST00000568076 MAP3K19Q56UN5 1328 aa25.92■■□□□ 1.74
CLN3-230ENST00000568076 ZNF428Q96B54 188 aa25.91■■□□□ 1.74
CLN3-230ENST00000568076 PIK3C2AO00443 1686 aa25.91■■□□□ 1.74
CLN3-230ENST00000568076 ZBTB47Q9UFB7 747 aaPredicted RBP25.91■■□□□ 1.74
CLN3-230ENST00000568076 FMN2Q9NZ56 1722 aa25.91■■□□□ 1.74
CLN3-230ENST00000568076 BRPF1P55201 1214 aaPredicted RBP25.9■■□□□ 1.74
CLN3-230ENST00000568076 DCTN1Q14203 1278 aa25.9■■□□□ 1.74
CLN3-230ENST00000568076 CFAP44Q96MT7 982 aa25.9■■□□□ 1.74
CLN3-230ENST00000568076 ZNF142P52746 1687 aaPredicted RBP25.9■■□□□ 1.74
CLN3-230ENST00000568076 ITPRIPQ8IWB1 547 aa25.89■■□□□ 1.74
CLN3-230ENST00000568076 TMEM57Q8N5G2 664 aa25.89■■□□□ 1.74
CLN3-230ENST00000568076 RWDD1Q9H446 243 aaPredicted RBP25.89■■□□□ 1.73
CLN3-230ENST00000568076 DDX19BQ9UMR2 479 aa25.89■■□□□ 1.73
CLN3-230ENST00000568076 IPO8O15397 1037 aaKnown RBP25.88■■□□□ 1.73
CLN3-230ENST00000568076 ANKLE2Q86XL3 938 aa25.88■■□□□ 1.73
CLN3-230ENST00000568076 ADAMTSL3P82987 1691 aa25.88■■□□□ 1.73
CLN3-230ENST00000568076 MRPL50Q8N5N7 158 aaKnown RBP25.86■■□□□ 1.73
CLN3-230ENST00000568076 CHD2O14647 1828 aaKnown RBP25.86■■□□□ 1.73
CLN3-230ENST00000568076 SBNO1A3KN83 1393 aa25.86■■□□□ 1.73
CLN3-230ENST00000568076 PDZRN3Q9UPQ7 1066 aa25.85■■□□□ 1.73
CLN3-230ENST00000568076 FLT4P35916 1363 aa25.85■■□□□ 1.73
CLN3-230ENST00000568076 ELL2O00472 640 aaPredicted RBP25.84■■□□□ 1.73
CLN3-230ENST00000568076 C8orf58Q8NAV2 365 aa25.84■■□□□ 1.73
CLN3-230ENST00000568076 ARHGEF10O15013 1369 aa25.83■■□□□ 1.73
CLN3-230ENST00000568076 TWISTNBQ3B726 338 aaPredicted RBP25.82■■□□□ 1.72
CLN3-230ENST00000568076 ZBTB40Q9NUA8 1239 aa25.82■■□□□ 1.72
CLN3-230ENST00000568076 MARF1Q9Y4F3 1742 aaKnown RBP25.82■■□□□ 1.72
CLN3-230ENST00000568076 NLRP6P59044 892 aa25.82■■□□□ 1.72
CLN3-230ENST00000568076 HDAC1Q13547 482 aaPredicted RBP25.8■■□□□ 1.72
CLN3-230ENST00000568076 RBM33Q96EV2 1170 aaKnown RBP25.8■■□□□ 1.72
CLN3-230ENST00000568076 MCM10Q7L590 875 aa25.79■■□□□ 1.72
CLN3-230ENST00000568076 ARHGAP45Q92619 1136 aa25.79■■□□□ 1.72
CLN3-230ENST00000568076 VIRMAQ69YN4 1812 aaKnown RBP25.78■■□□□ 1.72
CLN3-230ENST00000568076 AMPHP49418 695 aa25.78■■□□□ 1.72
CLN3-230ENST00000568076 NUTM2GQ5VZR2 741 aa25.78■■□□□ 1.72
CLN3-230ENST00000568076 USP54Q70EL1 1684 aa25.78■■□□□ 1.72
CLN3-230ENST00000568076 KDRP35968 1356 aa25.78■■□□□ 1.72
CLN3-230ENST00000568076 EYA1Q99502 592 aa25.76■■□□□ 1.72
CLN3-230ENST00000568076 IGSF1Q8N6C5 1336 aa25.76■■□□□ 1.71
CLN3-230ENST00000568076 CHL1O00533 1208 aa25.76■■□□□ 1.71
CLN3-230ENST00000568076 PHF8Q9UPP1 1060 aa25.75■■□□□ 1.71
CLN3-230ENST00000568076 MTHFSDQ2M296 383 aaKnown RBP25.74■■□□□ 1.71
CLN3-230ENST00000568076 ABTB2Q8N961 1025 aa25.74■■□□□ 1.71
CLN3-230ENST00000568076 DDRGK1Q96HY6 314 aa25.74■■□□□ 1.71
CLN3-230ENST00000568076 CRB1P82279 1406 aa25.74■■□□□ 1.71
CLN3-230ENST00000568076 SETD1BQ9UPS6 1966 aaKnown RBP25.73■■□□□ 1.71
CLN3-230ENST00000568076 FOXO3O43524 673 aa25.73■■□□□ 1.71
CLN3-230ENST00000568076 ABCC4O15439 1325 aa25.73■■□□□ 1.71
CLN3-230ENST00000568076 HOXC9P31274 260 aa25.73■■□□□ 1.71
CLN3-230ENST00000568076 KRT24Q2M2I5 525 aa25.73■■□□□ 1.71
CLN3-230ENST00000568076 ZBTB7BO15156 539 aaPredicted RBP25.72■■□□□ 1.71
CLN3-230ENST00000568076 ADGRL3Q9HAR2 1447 aa25.72■■□□□ 1.71
CLN3-230ENST00000568076 SMC5Q8IY18 1101 aa25.71■■□□□ 1.71
CLN3-230ENST00000568076 KIF24Q5T7B8 1368 aa25.71■■□□□ 1.71
CLN3-230ENST00000568076 SEC24BO95487 1268 aa25.71■■□□□ 1.71
CLN3-230ENST00000568076 NPHP4O75161 1426 aaPredicted RBP25.7■■□□□ 1.71
CLN3-230ENST00000568076 USP19O94966 1318 aa25.7■■□□□ 1.7
CLN3-230ENST00000568076 NWD1Q149M9 1564 aa25.69■■□□□ 1.7
CLN3-230ENST00000568076 KIAA0232Q92628 1395 aa25.68■■□□□ 1.7
CLN3-230ENST00000568076 API5Q9BZZ5 524 aaKnown RBP25.66■■□□□ 1.7
CLN3-230ENST00000568076 C14orf37Q86TY3 774 aa25.65■■□□□ 1.7
CLN3-230ENST00000568076 ESCO1Q5FWF5 840 aa25.64■■□□□ 1.7
Retrieved 100 of 20,778 RNA–protein pairs in 65.1 ms