RNA–Protein interactions for RNA: ENST00000563400.1

VPS35P1-201, Transcript of VPS35, retromer complex component pseudogene 1, humanhuman

BASIC

Gene VPS35P1, Length 1,518 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35P1-201ENST00000563400 ANKRD33BA6NCL7 494 aa7.36□□□□□ -1.23
VPS35P1-201ENST00000563400 GPR37L1O60883 481 aa7.36□□□□□ -1.23
VPS35P1-201ENST00000563400 FMNL1O95466 1100 aaPredicted RBP7.36□□□□□ -1.23
VPS35P1-201ENST00000563400 RECKO95980 971 aa7.36□□□□□ -1.23
VPS35P1-201ENST00000563400 MARSP56192 900 aaKnown RBP7.36□□□□□ -1.23
VPS35P1-201ENST00000563400 SF3A1Q15459 793 aaKnown RBP7.36□□□□□ -1.23
VPS35P1-201ENST00000563400 TICAM2Q86XR7 235 aa7.36□□□□□ -1.23
VPS35P1-201ENST00000563400 SPSB2Q99619 263 aa7.36□□□□□ -1.23
VPS35P1-201ENST00000563400 SALL2Q9Y467 1007 aaPredicted RBP7.36□□□□□ -1.23
VPS35P1-201ENST00000563400 SOWAHDA6NJG2 315 aa7.35□□□□□ -1.23
VPS35P1-201ENST00000563400 USP17L8P0C7I0 530 aa7.35□□□□□ -1.23
VPS35P1-201ENST00000563400 QPCTQ16769 361 aa7.35□□□□□ -1.23
VPS35P1-201ENST00000563400 TMEM164Q5U3C3 297 aa7.35□□□□□ -1.23
VPS35P1-201ENST00000563400 STK32AQ8WU08 396 aa7.35□□□□□ -1.23
VPS35P1-201ENST00000563400 MAFBQ9Y5Q3 323 aaPredicted RBP7.35□□□□□ -1.23
VPS35P1-201ENST00000563400 TLL1O43897 1013 aa7.34□□□□□ -1.23
VPS35P1-201ENST00000563400 VAMP1P23763 118 aa7.34□□□□□ -1.23
VPS35P1-201ENST00000563400 IRX6P78412 446 aaPredicted RBP7.34□□□□□ -1.23
VPS35P1-201ENST00000563400 DIXDC1Q155Q3 683 aa7.34□□□□□ -1.23
VPS35P1-201ENST00000563400 WASHC4Q2M389 1173 aa7.34□□□□□ -1.23
VPS35P1-201ENST00000563400 SLC6A16Q9GZN6 736 aa7.34□□□□□ -1.23
VPS35P1-201ENST00000563400 PRDM16Q9HAZ2 1276 aa7.34□□□□□ -1.23
VPS35P1-201ENST00000563400 ZMIZ1Q9ULJ6 1067 aa7.34□□□□□ -1.23
VPS35P1-201ENST00000563400 NDUFB9Q9Y6M9 179 aa7.34□□□□□ -1.23
VPS35P1-201ENST00000563400 ABCC8Q09428 1581 aa7.34□□□□□ -1.23
VPS35P1-201ENST00000563400 RTL5Q5HYW3 569 aaPredicted RBP7.33□□□□□ -1.24
VPS35P1-201ENST00000563400 PRR7Q8TB68 274 aa7.33□□□□□ -1.24
VPS35P1-201ENST00000563400 SLC27A5Q9Y2P5 690 aa7.33□□□□□ -1.24
VPS35P1-201ENST00000563400 SERPINB4P48594 390 aa7.32□□□□□ -1.24
VPS35P1-201ENST00000563400 ZNF326Q5BKZ1 582 aaKnown RBP7.32□□□□□ -1.24
VPS35P1-201ENST00000563400 TBC1D9Q6ZT07 1266 aa7.32□□□□□ -1.24
VPS35P1-201ENST00000563400 MICAL1Q8TDZ2 1067 aa7.32□□□□□ -1.24
VPS35P1-201ENST00000563400 SPIRE2Q8WWL2 714 aa7.32□□□□□ -1.24
VPS35P1-201ENST00000563400 SLAIN2Q9P270 581 aa7.32□□□□□ -1.24
VPS35P1-201ENST00000563400 LOC102724159A0A0B4J2E5 919 aa7.32□□□□□ -1.24
VPS35P1-201ENST00000563400 RAB11FIP3O75154 756 aa7.32□□□□□ -1.24
VPS35P1-201ENST00000563400 ARID4AP29374 1257 aaPredicted RBP7.32□□□□□ -1.24
VPS35P1-201ENST00000563400 PWP2Q15269 919 aaKnown RBP7.32□□□□□ -1.24
VPS35P1-201ENST00000563400 V9GY48 417 aaPredicted RBP7.32□□□□□ -1.24
VPS35P1-201ENST00000563400 CFTRP13569 1480 aa7.31□□□□□ -1.24
VPS35P1-201ENST00000563400 HOXA2O43364 376 aa7.31□□□□□ -1.24
VPS35P1-201ENST00000563400 CLSTN1O94985 981 aa7.31□□□□□ -1.24
VPS35P1-201ENST00000563400 S1PR4O95977 384 aa7.31□□□□□ -1.24
VPS35P1-201ENST00000563400 TSNAXIP1Q2TAA8 658 aa7.31□□□□□ -1.24
VPS35P1-201ENST00000563400 ANKLE1Q8NAG6 615 aa7.31□□□□□ -1.24
VPS35P1-201ENST00000563400 PRKD2Q9BZL6 878 aa7.31□□□□□ -1.24
VPS35P1-201ENST00000563400 RIPOR2Q9Y4F9 1068 aa7.31□□□□□ -1.24
VPS35P1-201ENST00000563400 CCDC88BA6NC98 1476 aa7.3□□□□□ -1.24
VPS35P1-201ENST00000563400 RNF223E7ERA6 249 aa7.3□□□□□ -1.24
VPS35P1-201ENST00000563400 SSFA2P28290 1259 aa7.3□□□□□ -1.24
VPS35P1-201ENST00000563400 ERCC5P28715 1186 aaPredicted RBP7.3□□□□□ -1.24
VPS35P1-201ENST00000563400 DNAJC2Q99543 621 aaKnown RBP7.3□□□□□ -1.24
VPS35P1-201ENST00000563400 HMX1Q9NP08 348 aaPredicted RBP7.3□□□□□ -1.24
VPS35P1-201ENST00000563400 BCCIPQ9P287 314 aaKnown RBP eCLIP7.3□□□□□ -1.24
VPS35P1-201ENST00000563400 BIN2Q9UBW5 565 aaPredicted RBP7.3□□□□□ -1.24
VPS35P1-201ENST00000563400 PPME1Q9Y570 386 aa7.3□□□□□ -1.24
VPS35P1-201ENST00000563400 SPTLC1O15269 473 aa7.29□□□□□ -1.24
VPS35P1-201ENST00000563400 LILRB3O75022 631 aa7.29□□□□□ -1.24
VPS35P1-201ENST00000563400 SCNN1AP37088 669 aa7.29□□□□□ -1.24
VPS35P1-201ENST00000563400 KANK4Q5T7N3 995 aaPredicted RBP7.29□□□□□ -1.24
VPS35P1-201ENST00000563400 C9orf131Q5VYM1 1079 aa7.29□□□□□ -1.24
VPS35P1-201ENST00000563400 BRICD5Q6PL45 260 aa7.29□□□□□ -1.24
VPS35P1-201ENST00000563400 THAP11Q96EK4 314 aa7.29□□□□□ -1.24
VPS35P1-201ENST00000563400 IRX2Q9BZI1 471 aaPredicted RBP7.29□□□□□ -1.24
VPS35P1-201ENST00000563400 SLC52A1Q9NWF4 448 aa7.29□□□□□ -1.24
VPS35P1-201ENST00000563400 WDR3Q9UNX4 943 aaKnown RBP eCLIP7.29□□□□□ -1.24
VPS35P1-201ENST00000563400 PCDHB15Q9Y5E8 787 aa7.29□□□□□ -1.24
VPS35P1-201ENST00000563400 SBNO2Q9Y2G9 1366 aa7.29□□□□□ -1.24
VPS35P1-201ENST00000563400 RSBN1LQ6PCB5 846 aaPredicted RBP7.28□□□□□ -1.24
VPS35P1-201ENST00000563400 FBXO33Q7Z6M2 555 aa7.28□□□□□ -1.24
VPS35P1-201ENST00000563400 GPATCH3Q96I76 525 aa7.28□□□□□ -1.24
VPS35P1-201ENST00000563400 CDCA7Q9BWT1 371 aaPredicted RBP7.28□□□□□ -1.24
VPS35P1-201ENST00000563400 SUGT1Q9Y2Z0 365 aa7.28□□□□□ -1.24
VPS35P1-201ENST00000563400 CEP164Q9UPV0 1460 aa7.28□□□□□ -1.24
VPS35P1-201ENST00000563400 ELOAQ14241 798 aaKnown RBP7.27□□□□□ -1.25
VPS35P1-201ENST00000563400 TUSC1Q2TAM9 212 aa7.27□□□□□ -1.25
VPS35P1-201ENST00000563400 MSS51Q4VC12 460 aa7.27□□□□□ -1.25
VPS35P1-201ENST00000563400 USB1Q9BQ65 265 aaKnown RBP7.27□□□□□ -1.25
VPS35P1-201ENST00000563400 TRIM34Q9BYJ4 488 aa7.27□□□□□ -1.25
VPS35P1-201ENST00000563400 LNPKQ9C0E8 428 aa7.27□□□□□ -1.25
VPS35P1-201ENST00000563400 PLEKHD1A6NEE1 506 aa7.27□□□□□ -1.25
VPS35P1-201ENST00000563400 MOXD2PA6NHM9 499 aa7.27□□□□□ -1.25
VPS35P1-201ENST00000563400 FDX1P10109 184 aa7.27□□□□□ -1.25
VPS35P1-201ENST00000563400 SLC19A1P41440 591 aa7.27□□□□□ -1.25
VPS35P1-201ENST00000563400 LAPTM4AQ15012 233 aa7.27□□□□□ -1.25
VPS35P1-201ENST00000563400 CABLES1Q8TDN4 633 aa7.27□□□□□ -1.25
VPS35P1-201ENST00000563400 NOVA2Q9UNW9 492 aaKnown RBP7.27□□□□□ -1.25
VPS35P1-201ENST00000563400 NDUFV2P19404 249 aa7.26□□□□□ -1.25
VPS35P1-201ENST00000563400 RNF19BQ6ZMZ0 732 aa7.26□□□□□ -1.25
VPS35P1-201ENST00000563400 FANCD2Q9BXW9 1451 aa7.26□□□□□ -1.25
VPS35P1-201ENST00000563400 CUX2O14529 1486 aa7.25□□□□□ -1.25
VPS35P1-201ENST00000563400 PPEF1O14829 653 aaPredicted RBP7.25□□□□□ -1.25
VPS35P1-201ENST00000563400 GJA5P36382 358 aa7.25□□□□□ -1.25
VPS35P1-201ENST00000563400 NOP9Q86U38 636 aaKnown RBP7.25□□□□□ -1.25
VPS35P1-201ENST00000563400 NUTM2BA6NNL0 878 aaPredicted RBP7.24□□□□□ -1.25
VPS35P1-201ENST00000563400 NUTM2EB1AL46 878 aaPredicted RBP7.24□□□□□ -1.25
VPS35P1-201ENST00000563400 C6orf229H3BNL8 230 aa7.24□□□□□ -1.25
VPS35P1-201ENST00000563400 ZBTB24O43167 697 aaPredicted RBP7.24□□□□□ -1.25
VPS35P1-201ENST00000563400 ATP9BO43861 1147 aa7.24□□□□□ -1.25
VPS35P1-201ENST00000563400 HDLBPQ00341 1268 aaKnown RBP7.24□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms