RNA–Protein interactions for RNA: ENST00000563239.1

UBR1-204, Transcript of ubiquitin protein ligase E3 component n-recognin 1, humanhuman

TSL 3

Gene UBR1, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR1-204ENST00000563239 SPATA31A7Q8IWB4 1347 aa11.84□□□□□ -0.51
UBR1-204ENST00000563239 COL5A2P05997 1499 aaPredicted RBP11.83□□□□□ -0.52
UBR1-204ENST00000563239 CCDC7Q96M83 1385 aa11.83□□□□□ -0.52
UBR1-204ENST00000563239 LARP1Q6PKG0 1096 aaKnown RBP11.83□□□□□ -0.52
UBR1-204ENST00000563239 COG3Q96JB2 828 aa11.83□□□□□ -0.52
UBR1-204ENST00000563239 SPATA31A1Q5TZJ5 1347 aa11.83□□□□□ -0.52
UBR1-204ENST00000563239 ZBTB7CA1YPR0 619 aa11.82□□□□□ -0.52
UBR1-204ENST00000563239 STRN4Q9NRL3 753 aa11.82□□□□□ -0.52
UBR1-204ENST00000563239 KIF20BQ96Q89 1820 aa11.81□□□□□ -0.52
UBR1-204ENST00000563239 CCDC9Q9Y3X0 531 aaKnown RBP11.81□□□□□ -0.52
UBR1-204ENST00000563239 ABCC6O95255 1503 aa11.81□□□□□ -0.52
UBR1-204ENST00000563239 LTN1O94822 1766 aa11.8□□□□□ -0.52
UBR1-204ENST00000563239 RGPD5Q99666 1765 aa11.8□□□□□ -0.52
UBR1-204ENST00000563239 EVA1CP58658 441 aa11.8□□□□□ -0.52
UBR1-204ENST00000563239 CGNL1Q0VF96 1302 aa11.8□□□□□ -0.52
UBR1-204ENST00000563239 MAP3K19Q56UN5 1328 aa11.8□□□□□ -0.52
UBR1-204ENST00000563239 EP400Q96L91 3159 aa11.79□□□□□ -0.52
UBR1-204ENST00000563239 PER1O15534 1290 aaPredicted RBP11.79□□□□□ -0.52
UBR1-204ENST00000563239 FAM98CQ17RN3 349 aaKnown RBP11.79□□□□□ -0.52
UBR1-204ENST00000563239 SEPT12Q8IYM1 358 aa11.79□□□□□ -0.52
UBR1-204ENST00000563239 THSD7AQ9UPZ6 1657 aa11.78□□□□□ -0.52
UBR1-204ENST00000563239 RRS1Q15050 365 aaKnown RBP11.78□□□□□ -0.52
UBR1-204ENST00000563239 IP6K1Q92551 441 aa11.78□□□□□ -0.52
UBR1-204ENST00000563239 WDR17Q8IZU2 1322 aa11.78□□□□□ -0.52
UBR1-204ENST00000563239 CRB1P82279 1406 aa11.77□□□□□ -0.52
UBR1-204ENST00000563239 AMER1Q5JTC6 1135 aaPredicted RBP11.77□□□□□ -0.53
UBR1-204ENST00000563239 IFFO2Q5TF58 517 aa11.77□□□□□ -0.53
UBR1-204ENST00000563239 BARGINQ6ZT62 677 aa11.77□□□□□ -0.53
UBR1-204ENST00000563239 PEAK1Q9H792 1746 aa11.77□□□□□ -0.53
UBR1-204ENST00000563239 BRWD3Q6RI45 1802 aa11.76□□□□□ -0.53
UBR1-204ENST00000563239 HOXC9P31274 260 aa11.76□□□□□ -0.53
UBR1-204ENST00000563239 TCP11L2Q8N4U5 519 aa11.76□□□□□ -0.53
UBR1-204ENST00000563239 USP35Q9P2H5 1018 aa11.76□□□□□ -0.53
UBR1-204ENST00000563239 ANKRD26Q9UPS8 1709 aa11.76□□□□□ -0.53
UBR1-204ENST00000563239 ERBB3P21860 1342 aa11.76□□□□□ -0.53
UBR1-204ENST00000563239 BLMP54132 1417 aaPredicted RBP11.76□□□□□ -0.53
UBR1-204ENST00000563239 PPP4R3CPQ6ZMV5 832 aa11.75□□□□□ -0.53
UBR1-204ENST00000563239 TOM1L2Q6ZVM7 507 aa11.75□□□□□ -0.53
UBR1-204ENST00000563239 ANKRD24Q8TF21 1146 aa11.75□□□□□ -0.53
UBR1-204ENST00000563239 UPF1Q92900 1129 aaKnown RBP eCLIP11.75□□□□□ -0.53
UBR1-204ENST00000563239 CARD10Q9BWT7 1032 aa11.75□□□□□ -0.53
UBR1-204ENST00000563239 THRAP3Q9Y2W1 955 aaKnown RBP11.75□□□□□ -0.53
UBR1-204ENST00000563239 NSD2O96028 1365 aa11.75□□□□□ -0.53
UBR1-204ENST00000563239 KNSTRNQ9Y448 316 aa11.74□□□□□ -0.53
UBR1-204ENST00000563239 EMILIN1Q9Y6C2 1016 aa11.74□□□□□ -0.53
UBR1-204ENST00000563239 RTL1A6NKG5 1358 aa11.74□□□□□ -0.53
UBR1-204ENST00000563239 DISP2A7MBM2 1401 aa11.73□□□□□ -0.53
UBR1-204ENST00000563239 CSB-PGBD3P0DP91 1061 aa11.73□□□□□ -0.53
UBR1-204ENST00000563239 ZEB1P37275 1124 aaPredicted RBP11.73□□□□□ -0.53
UBR1-204ENST00000563239 AMPHP49418 695 aa11.73□□□□□ -0.53
UBR1-204ENST00000563239 HSP90AB2PQ58FF8 381 aa11.73□□□□□ -0.53
UBR1-204ENST00000563239 KRT27Q7Z3Y8 459 aa11.73□□□□□ -0.53
UBR1-204ENST00000563239 POLKQ9UBT6 870 aa11.73□□□□□ -0.53
UBR1-204ENST00000563239 INSRP06213 1382 aa11.72□□□□□ -0.53
UBR1-204ENST00000563239 KIF24Q5T7B8 1368 aa11.72□□□□□ -0.53
UBR1-204ENST00000563239 LTV1Q96GA3 475 aaPredicted RBP11.72□□□□□ -0.53
UBR1-204ENST00000563239 PARP4Q9UKK3 1724 aaKnown RBP11.72□□□□□ -0.53
UBR1-204ENST00000563239 FLT4P35916 1363 aa11.71□□□□□ -0.53
UBR1-204ENST00000563239 A0A0G2JS52 829 aa11.71□□□□□ -0.53
UBR1-204ENST00000563239 TNNT2P45379 298 aaPredicted RBP11.71□□□□□ -0.53
UBR1-204ENST00000563239 MYT1Q01538 1121 aa11.71□□□□□ -0.53
UBR1-204ENST00000563239 FAM182BQ5T319 152 aa11.71□□□□□ -0.53
UBR1-204ENST00000563239 NLRP2Q9NX02 1062 aa11.71□□□□□ -0.53
UBR1-204ENST00000563239 WNK3Q9BYP7 1800 aa11.71□□□□□ -0.54
UBR1-204ENST00000563239 SMG6Q86US8 1419 aaKnown RBP11.7□□□□□ -0.54
UBR1-204ENST00000563239 NPC1L1Q9UHC9 1359 aa11.7□□□□□ -0.54
UBR1-204ENST00000563239 MAP2P11137 1827 aaKnown RBP11.7□□□□□ -0.54
UBR1-204ENST00000563239 MORC1Q86VD1 984 aa11.7□□□□□ -0.54
UBR1-204ENST00000563239 RGPD2P0DJD1 1756 aa11.69□□□□□ -0.54
UBR1-204ENST00000563239 FAM208AQ9UK61 1670 aaKnown RBP11.69□□□□□ -0.54
UBR1-204ENST00000563239 LRRC37A3O60309 1634 aa11.69□□□□□ -0.54
UBR1-204ENST00000563239 CC2D1BQ5T0F9 858 aaKnown RBP11.69□□□□□ -0.54
UBR1-204ENST00000563239 NBPF6Q5VWK0 638 aa11.69□□□□□ -0.54
UBR1-204ENST00000563239 NBPF4Q96M43 638 aa11.69□□□□□ -0.54
UBR1-204ENST00000563239 PPM1GO15355 546 aaPredicted RBP11.68□□□□□ -0.54
UBR1-204ENST00000563239 CDCA7Q9BWT1 371 aaPredicted RBP11.68□□□□□ -0.54
UBR1-204ENST00000563239 NCAPD2Q15021 1401 aa11.67□□□□□ -0.54
UBR1-204ENST00000563239 IL2RBP14784 551 aa11.66□□□□□ -0.54
UBR1-204ENST00000563239 PDE3BQ13370 1112 aa11.66□□□□□ -0.54
UBR1-204ENST00000563239 DDB1Q16531 1140 aa11.66□□□□□ -0.54
UBR1-204ENST00000563239 USHBP1Q8N6Y0 703 aa11.66□□□□□ -0.54
UBR1-204ENST00000563239 MARCH10Q8NA82 808 aaPredicted RBP11.66□□□□□ -0.54
UBR1-204ENST00000563239 EIF4A2Q14240 407 aaKnown RBP11.65□□□□□ -0.54
UBR1-204ENST00000563239 EYA1Q99502 592 aa11.65□□□□□ -0.54
UBR1-204ENST00000563239 TNS2Q63HR2 1409 aa11.65□□□□□ -0.54
UBR1-204ENST00000563239 MEGF6O75095 1541 aa11.65□□□□□ -0.55
UBR1-204ENST00000563239 EXOC5O00471 708 aa11.64□□□□□ -0.55
UBR1-204ENST00000563239 FAM196AQ6ZSG2 479 aa11.64□□□□□ -0.55
UBR1-204ENST00000563239 MTHFSP49914 203 aa11.63□□□□□ -0.55
UBR1-204ENST00000563239 CNGB1Q14028 1251 aaPredicted RBP11.63□□□□□ -0.55
UBR1-204ENST00000563239 CCDC125Q86Z20 511 aa11.63□□□□□ -0.55
UBR1-204ENST00000563239 OVOS2A0A0G2JMS6 1433 aa11.62□□□□□ -0.55
UBR1-204ENST00000563239 BCL9O00512 1426 aa11.62□□□□□ -0.55
UBR1-204ENST00000563239 DDX10Q13206 875 aaKnown RBP11.62□□□□□ -0.55
UBR1-204ENST00000563239 SHANK3Q9BYB0 1731 aa11.61□□□□□ -0.55
UBR1-204ENST00000563239 TNS1Q9HBL0 1735 aaKnown RBP11.61□□□□□ -0.55
UBR1-204ENST00000563239 TRIM37O94972 964 aa11.61□□□□□ -0.55
UBR1-204ENST00000563239 IL13P35225 146 aa11.61□□□□□ -0.55
UBR1-204ENST00000563239 PTF1AQ7RTS3 328 aa11.61□□□□□ -0.55
UBR1-204ENST00000563239 DEFB132Q7Z7B7 95 aa11.61□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms