RNA–Protein interactions for RNA: ENST00000559996.1

HERC1-206, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase family member 1, humanhuman

TSL 2

Gene HERC1, Length 443 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC1-206ENST00000559996 TNNT2P45379 298 aaPredicted RBP12.74□□□□□ -0.37
HERC1-206ENST00000559996 CABLES1Q8TDN4 633 aa12.74□□□□□ -0.37
HERC1-206ENST00000559996 CLEC11AQ9Y240 323 aa12.74□□□□□ -0.37
HERC1-206ENST00000559996 PHLPP1O60346 1717 aa12.74□□□□□ -0.37
HERC1-206ENST00000559996 NFAT5O94916 1531 aa12.73□□□□□ -0.37
HERC1-206ENST00000559996 PNPLA6Q8IY17 1366 aa12.73□□□□□ -0.37
HERC1-206ENST00000559996 HSPA1LP34931 641 aa12.73□□□□□ -0.37
HERC1-206ENST00000559996 MAP2P11137 1827 aaKnown RBP12.73□□□□□ -0.37
HERC1-206ENST00000559996 ARHGEF10O15013 1369 aa12.72□□□□□ -0.37
HERC1-206ENST00000559996 MTHFSP49914 203 aa12.72□□□□□ -0.37
HERC1-206ENST00000559996 RRS1Q15050 365 aaKnown RBP12.72□□□□□ -0.37
HERC1-206ENST00000559996 LMOD2Q6P5Q4 547 aa12.72□□□□□ -0.37
HERC1-206ENST00000559996 EMILIN1Q9Y6C2 1016 aa12.72□□□□□ -0.37
HERC1-206ENST00000559996 INSRP06213 1382 aa12.71□□□□□ -0.37
HERC1-206ENST00000559996 CCER2I3L3R5 266 aa12.71□□□□□ -0.37
HERC1-206ENST00000559996 ARHGEF25Q86VW2 580 aa12.71□□□□□ -0.37
HERC1-206ENST00000559996 SMG6Q86US8 1419 aaKnown RBP12.71□□□□□ -0.38
HERC1-206ENST00000559996 COL22A1Q8NFW1 1626 aaPredicted RBP12.7□□□□□ -0.38
HERC1-206ENST00000559996 MAP3K19Q56UN5 1328 aa12.7□□□□□ -0.38
HERC1-206ENST00000559996 PEAK1Q9H792 1746 aa12.69□□□□□ -0.38
HERC1-206ENST00000559996 KCNH5Q8NCM2 988 aa12.69□□□□□ -0.38
HERC1-206ENST00000559996 SPDYE1Q8NFV5 336 aaPredicted RBP12.69□□□□□ -0.38
HERC1-206ENST00000559996 PHRF1Q9P1Y6 1649 aaKnown RBP12.69□□□□□ -0.38
HERC1-206ENST00000559996 SOX12O15370 315 aa12.68□□□□□ -0.38
HERC1-206ENST00000559996 SSUH2Q9Y2M2 353 aa12.68□□□□□ -0.38
HERC1-206ENST00000559996 AXIN2Q9Y2T1 843 aa12.68□□□□□ -0.38
HERC1-206ENST00000559996 COL3A1P02461 1466 aaPredicted RBP12.67□□□□□ -0.38
HERC1-206ENST00000559996 COL18A1P39060 1754 aa12.67□□□□□ -0.38
HERC1-206ENST00000559996 PLEKHG5O94827 1062 aa12.67□□□□□ -0.38
HERC1-206ENST00000559996 ZC3H6P61129 1189 aaKnown RBP12.67□□□□□ -0.38
HERC1-206ENST00000559996 ABCA3Q99758 1704 aa12.67□□□□□ -0.38
HERC1-206ENST00000559996 CPDO75976 1380 aa12.67□□□□□ -0.38
HERC1-206ENST00000559996 FAM83GA6ND36 823 aa12.66□□□□□ -0.38
HERC1-206ENST00000559996 HOXC9P31274 260 aa12.66□□□□□ -0.38
HERC1-206ENST00000559996 HSP90AB2PQ58FF8 381 aa12.66□□□□□ -0.38
HERC1-206ENST00000559996 PNISRQ8TF01 805 aaKnown RBP12.66□□□□□ -0.38
HERC1-206ENST00000559996 FBXO41Q8TF61 875 aa12.66□□□□□ -0.38
HERC1-206ENST00000559996 IP6K1Q92551 441 aa12.66□□□□□ -0.38
HERC1-206ENST00000559996 SHPRHQ149N8 1683 aa12.65□□□□□ -0.38
HERC1-206ENST00000559996 IL13P35225 146 aa12.65□□□□□ -0.38
HERC1-206ENST00000559996 JCADQ9P266 1359 aa12.65□□□□□ -0.38
HERC1-206ENST00000559996 PRKAR2AP13861 404 aaKnown RBP12.64□□□□□ -0.39
HERC1-206ENST00000559996 KIF24Q5T7B8 1368 aa12.64□□□□□ -0.39
HERC1-206ENST00000559996 KIAA0232Q92628 1395 aa12.64□□□□□ -0.39
HERC1-206ENST00000559996 LTN1O94822 1766 aa12.64□□□□□ -0.39
HERC1-206ENST00000559996 CHRNA2Q15822 529 aa12.63□□□□□ -0.39
HERC1-206ENST00000559996 MRS2Q9HD23 443 aa12.63□□□□□ -0.39
HERC1-206ENST00000559996 CDK12Q9NYV4 1490 aaPredicted RBP12.63□□□□□ -0.39
HERC1-206ENST00000559996 FLT4P35916 1363 aa12.62□□□□□ -0.39
HERC1-206ENST00000559996 PPM1GO15355 546 aaPredicted RBP12.62□□□□□ -0.39
HERC1-206ENST00000559996 AMPHP49418 695 aa12.62□□□□□ -0.39
HERC1-206ENST00000559996 EIF4A2Q14240 407 aaKnown RBP12.62□□□□□ -0.39
HERC1-206ENST00000559996 RGPD5Q99666 1765 aa12.61□□□□□ -0.39
HERC1-206ENST00000559996 LMO7Q8WWI1 1683 aa12.61□□□□□ -0.39
HERC1-206ENST00000559996 CAMTA1Q9Y6Y1 1673 aa12.61□□□□□ -0.39
HERC1-206ENST00000559996 RTL1A6NKG5 1358 aa12.61□□□□□ -0.39
HERC1-206ENST00000559996 LRP6O75581 1613 aa12.61□□□□□ -0.39
HERC1-206ENST00000559996 DIAPH1O60610 1272 aaKnown RBP12.6□□□□□ -0.39
HERC1-206ENST00000559996 ADAMTS8Q9UP79 889 aa12.6□□□□□ -0.39
HERC1-206ENST00000559996 SPATA31A6Q5VVP1 1343 aa12.6□□□□□ -0.39
HERC1-206ENST00000559996 NUTM2BA6NNL0 878 aaPredicted RBP12.59□□□□□ -0.39
HERC1-206ENST00000559996 NUTM2EB1AL46 878 aaPredicted RBP12.59□□□□□ -0.39
HERC1-206ENST00000559996 EVX2Q03828 476 aa12.59□□□□□ -0.39
HERC1-206ENST00000559996 NUTM2AQ8IVF1 878 aaPredicted RBP12.59□□□□□ -0.39
HERC1-206ENST00000559996 EYA1Q99502 592 aa12.59□□□□□ -0.39
HERC1-206ENST00000559996 ABCC6O95255 1503 aa12.58□□□□□ -0.4
HERC1-206ENST00000559996 ZBTB7CA1YPR0 619 aa12.58□□□□□ -0.4
HERC1-206ENST00000559996 RGPD1P0DJD0 1748 aa12.58□□□□□ -0.4
HERC1-206ENST00000559996 BLMP54132 1417 aaPredicted RBP12.58□□□□□ -0.4
HERC1-206ENST00000559996 NBPF6Q5VWK0 638 aa12.58□□□□□ -0.4
HERC1-206ENST00000559996 NBPF4Q96M43 638 aa12.58□□□□□ -0.4
HERC1-206ENST00000559996 CFAP53Q96M91 514 aa12.58□□□□□ -0.4
HERC1-206ENST00000559996 PRDM11Q9NQV5 511 aa12.58□□□□□ -0.4
HERC1-206ENST00000559996 ERBB3P21860 1342 aa12.58□□□□□ -0.4
HERC1-206ENST00000559996 ADAMTS2O95450 1211 aa12.57□□□□□ -0.4
HERC1-206ENST00000559996 ANKRD24Q8TF21 1146 aa12.57□□□□□ -0.4
HERC1-206ENST00000559996 PLEKHF1Q96S99 279 aa12.57□□□□□ -0.4
HERC1-206ENST00000559996 SLIT2O94813 1529 aa12.57□□□□□ -0.4
HERC1-206ENST00000559996 NCAPD2Q15021 1401 aa12.56□□□□□ -0.4
HERC1-206ENST00000559996 HAP1P54257 671 aaPredicted RBP12.56□□□□□ -0.4
HERC1-206ENST00000559996 FAM9BQ8IZU0 186 aa12.56□□□□□ -0.4
HERC1-206ENST00000559996 LTV1Q96GA3 475 aaPredicted RBP12.56□□□□□ -0.4
HERC1-206ENST00000559996 IGSF1Q8N6C5 1336 aa12.56□□□□□ -0.4
HERC1-206ENST00000559996 RGPD2P0DJD1 1756 aa12.56□□□□□ -0.4
HERC1-206ENST00000559996 COL5A2P05997 1499 aaPredicted RBP12.55□□□□□ -0.4
HERC1-206ENST00000559996 FNBP4Q8N3X1 1017 aaPredicted RBP12.55□□□□□ -0.4
HERC1-206ENST00000559996 BTG4Q9NY30 223 aa12.55□□□□□ -0.4
HERC1-206ENST00000559996 COL14A1Q05707 1796 aaKnown RBP12.55□□□□□ -0.4
HERC1-206ENST00000559996 BCL9LQ86UU0 1499 aa12.54□□□□□ -0.4
HERC1-206ENST00000559996 AEBP1Q8IUX7 1158 aa12.54□□□□□ -0.4
HERC1-206ENST00000559996 RSPH6AQ9H0K4 717 aa12.54□□□□□ -0.4
HERC1-206ENST00000559996 KDRP35968 1356 aa12.54□□□□□ -0.4
HERC1-206ENST00000559996 FCHSD2O94868 740 aa12.53□□□□□ -0.4
HERC1-206ENST00000559996 U2AF1L5P0DN76 240 aaPredicted RBP12.53□□□□□ -0.4
HERC1-206ENST00000559996 U2AF1Q01081 240 aaKnown RBP eCLIP12.53□□□□□ -0.4
HERC1-206ENST00000559996 LARP1Q6PKG0 1096 aaKnown RBP12.53□□□□□ -0.4
HERC1-206ENST00000559996 NUDCQ9Y266 331 aa12.53□□□□□ -0.4
HERC1-206ENST00000559996 WDR17Q8IZU2 1322 aa12.53□□□□□ -0.4
HERC1-206ENST00000559996 NRAPQ86VF7 1730 aa12.52□□□□□ -0.41
HERC1-206ENST00000559996 U2SURPO15042 1029 aaKnown RBP12.52□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 85.7 ms