RNA–Protein interactions for RNA: ENST00000559822.1

SPG11-219, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 5

Gene SPG11, Length 561 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-219ENST00000559822 TERF2IPQ9NYB0 399 aa17.32■□□□□ 0.36
SPG11-219ENST00000559822 NFAT5O94916 1531 aa17.31■□□□□ 0.36
SPG11-219ENST00000559822 OVOS2A0A0G2JMS6 1433 aa17.31■□□□□ 0.36
SPG11-219ENST00000559822 OVOS2A0A0J9YW53 1432 aa17.31■□□□□ 0.36
SPG11-219ENST00000559822 OVOS2Q6IE36 1432 aa17.31■□□□□ 0.36
SPG11-219ENST00000559822 USP31Q70CQ4 1352 aa17.31■□□□□ 0.36
SPG11-219ENST00000559822 SOX12O15370 315 aa17.31■□□□□ 0.36
SPG11-219ENST00000559822 APBA3O96018 575 aa17.31■□□□□ 0.36
SPG11-219ENST00000559822 CSB-PGBD3P0DP91 1061 aa17.31■□□□□ 0.36
SPG11-219ENST00000559822 DDB1Q16531 1140 aa17.31■□□□□ 0.36
SPG11-219ENST00000559822 SUGP2Q8IX01 1082 aaKnown RBP eCLIP17.31■□□□□ 0.36
SPG11-219ENST00000559822 USP54Q70EL1 1684 aa17.31■□□□□ 0.36
SPG11-219ENST00000559822 LRP5O75197 1615 aa17.31■□□□□ 0.36
SPG11-219ENST00000559822 EDC4Q6P2E9 1401 aaKnown RBP17.3■□□□□ 0.36
SPG11-219ENST00000559822 NINLQ9Y2I6 1382 aa17.3■□□□□ 0.36
SPG11-219ENST00000559822 EZH2Q15910 746 aaKnown RBP17.3■□□□□ 0.36
SPG11-219ENST00000559822 AXIN2Q9Y2T1 843 aa17.3■□□□□ 0.36
SPG11-219ENST00000559822 CD163L1Q9NR16 1453 aa17.3■□□□□ 0.36
SPG11-219ENST00000559822 SRCAPQ6ZRS2 3230 aa17.3■□□□□ 0.36
SPG11-219ENST00000559822 LRRC37A3O60309 1634 aa17.29■□□□□ 0.36
SPG11-219ENST00000559822 PSDA5PKW4 1024 aaPredicted RBP17.29■□□□□ 0.36
SPG11-219ENST00000559822 CAMKK2Q96RR4 588 aa17.29■□□□□ 0.36
SPG11-219ENST00000559822 CARD10Q9BWT7 1032 aa17.29■□□□□ 0.36
SPG11-219ENST00000559822 WNK3Q9BYP7 1800 aa17.28■□□□□ 0.36
SPG11-219ENST00000559822 CCDC7Q96M83 1385 aa17.28■□□□□ 0.36
SPG11-219ENST00000559822 NME9Q86XW9 330 aa17.27■□□□□ 0.36
SPG11-219ENST00000559822 SLC12A5Q9H2X9 1139 aa17.27■□□□□ 0.36
SPG11-219ENST00000559822 A0A1W2PP64 1363 aa17.27■□□□□ 0.35
SPG11-219ENST00000559822 RGPD5Q99666 1765 aa17.26■□□□□ 0.35
SPG11-219ENST00000559822 R3HDM1Q15032 1099 aaKnown RBP17.26■□□□□ 0.35
SPG11-219ENST00000559822 RREB1Q92766 1687 aa17.26■□□□□ 0.35
SPG11-219ENST00000559822 PEAK1Q9H792 1746 aa17.25■□□□□ 0.35
SPG11-219ENST00000559822 ST20-MTHFSA0A0A6YYL1 179 aa17.25■□□□□ 0.35
SPG11-219ENST00000559822 NBPF14Q5TI25 921 aa17.24■□□□□ 0.35
SPG11-219ENST00000559822 TESK2Q96S53 571 aa17.24■□□□□ 0.35
SPG11-219ENST00000559822 BCL9O00512 1426 aa17.23■□□□□ 0.35
SPG11-219ENST00000559822 LTN1O94822 1766 aa17.23■□□□□ 0.35
SPG11-219ENST00000559822 RGPD3A6NKT7 1758 aaPredicted RBP17.22■□□□□ 0.35
SPG11-219ENST00000559822 RGPD4Q7Z3J3 1758 aa17.22■□□□□ 0.35
SPG11-219ENST00000559822 ERBB3P21860 1342 aa17.21■□□□□ 0.35
SPG11-219ENST00000559822 NUP188Q5SRE5 1749 aa17.21■□□□□ 0.35
SPG11-219ENST00000559822 EXOC5O00471 708 aa17.21■□□□□ 0.35
SPG11-219ENST00000559822 TMF1P82094 1093 aa17.21■□□□□ 0.35
SPG11-219ENST00000559822 BCL11BQ9C0K0 894 aaPredicted RBP17.21■□□□□ 0.35
SPG11-219ENST00000559822 SBF2Q86WG5 1849 aa17.21■□□□□ 0.35
SPG11-219ENST00000559822 USP47Q96K76 1375 aa17.2■□□□□ 0.34
SPG11-219ENST00000559822 PLSCR1O15162 318 aa17.2■□□□□ 0.34
SPG11-219ENST00000559822 NLRP2Q9NX02 1062 aa17.2■□□□□ 0.34
SPG11-219ENST00000559822 TNS2Q63HR2 1409 aa17.2■□□□□ 0.34
SPG11-219ENST00000559822 MARCH10Q8NA82 808 aaPredicted RBP17.19■□□□□ 0.34
SPG11-219ENST00000559822 COG3Q96JB2 828 aa17.19■□□□□ 0.34
SPG11-219ENST00000559822 TIMELESSQ9UNS1 1208 aa17.19■□□□□ 0.34
SPG11-219ENST00000559822 ANKRD36BQ8N2N9 1353 aa17.18■□□□□ 0.34
SPG11-219ENST00000559822 CDCA8Q53HL2 280 aa17.18■□□□□ 0.34
SPG11-219ENST00000559822 CLSPNQ9HAW4 1339 aa17.18■□□□□ 0.34
SPG11-219ENST00000559822 ANKRD24Q8TF21 1146 aa17.17■□□□□ 0.34
SPG11-219ENST00000559822 IL2RBP14784 551 aa17.16■□□□□ 0.34
SPG11-219ENST00000559822 IP6K1Q92551 441 aa17.16■□□□□ 0.34
SPG11-219ENST00000559822 FAM208AQ9UK61 1670 aaKnown RBP17.16■□□□□ 0.34
SPG11-219ENST00000559822 AMPHP49418 695 aa17.11■□□□□ 0.33
SPG11-219ENST00000559822 MAP3K19Q56UN5 1328 aa17.11■□□□□ 0.33
SPG11-219ENST00000559822 RTL1A6NKG5 1358 aa17.11■□□□□ 0.33
SPG11-219ENST00000559822 NHSQ6T4R5 1651 aa17.1■□□□□ 0.33
SPG11-219ENST00000559822 HOXC9P31274 260 aa17.09■□□□□ 0.33
SPG11-219ENST00000559822 PTF1AQ7RTS3 328 aa17.09■□□□□ 0.33
SPG11-219ENST00000559822 LTV1Q96GA3 475 aaPredicted RBP17.09■□□□□ 0.33
SPG11-219ENST00000559822 SPON1Q9HCB6 807 aa17.09■□□□□ 0.33
SPG11-219ENST00000559822 TXNRD1Q16881 649 aa17.08■□□□□ 0.32
SPG11-219ENST00000559822 PCGF6Q9BYE7 350 aa17.08■□□□□ 0.32
SPG11-219ENST00000559822 SMG6Q86US8 1419 aaKnown RBP17.07■□□□□ 0.32
SPG11-219ENST00000559822 FYB1O15117 783 aa17.07■□□□□ 0.32
SPG11-219ENST00000559822 KCNQ2O43526 872 aa17.07■□□□□ 0.32
SPG11-219ENST00000559822 GGNBP2Q9H3C7 697 aa17.07■□□□□ 0.32
SPG11-219ENST00000559822 KIF20BQ96Q89 1820 aa17.06■□□□□ 0.32
SPG11-219ENST00000559822 PROM2Q8N271 834 aa17.06■□□□□ 0.32
SPG11-219ENST00000559822 ACSBG1Q96GR2 724 aa17.06■□□□□ 0.32
SPG11-219ENST00000559822 ANO8Q9HCE9 1232 aaPredicted RBP17.06■□□□□ 0.32
SPG11-219ENST00000559822 STK32BQ9NY57 414 aa17.06■□□□□ 0.32
SPG11-219ENST00000559822 PPP1R1BQ9UD71 204 aaPredicted RBP17.06■□□□□ 0.32
SPG11-219ENST00000559822 KIF24Q5T7B8 1368 aa17.04■□□□□ 0.32
SPG11-219ENST00000559822 RRS1Q15050 365 aaKnown RBP17.03■□□□□ 0.32
SPG11-219ENST00000559822 DDX54Q8TDD1 881 aaKnown RBP17.03■□□□□ 0.32
SPG11-219ENST00000559822 MYOM1P52179 1685 aa17.03■□□□□ 0.32
SPG11-219ENST00000559822 BTAF1O14981 1849 aa17.03■□□□□ 0.32
SPG11-219ENST00000559822 CASZ1Q86V15 1759 aa17.02■□□□□ 0.32
SPG11-219ENST00000559822 CGNL1Q0VF96 1302 aa17.02■□□□□ 0.32
SPG11-219ENST00000559822 FBLN1P23142 703 aa17.02■□□□□ 0.32
SPG11-219ENST00000559822 SLC15A2Q16348 729 aa17.02■□□□□ 0.32
SPG11-219ENST00000559822 NSD3Q9BZ95 1437 aa17.02■□□□□ 0.31
SPG11-219ENST00000559822 FLT4P35916 1363 aa17.02■□□□□ 0.31
SPG11-219ENST00000559822 KAT6BQ8WYB5 2073 aa17.01■□□□□ 0.31
SPG11-219ENST00000559822 INSRP06213 1382 aa17.01■□□□□ 0.31
SPG11-219ENST00000559822 ZCRB1Q8TBF4 217 aaKnown RBP17■□□□□ 0.31
SPG11-219ENST00000559822 DCAF8L1A6NGE4 600 aa16.99■□□□□ 0.31
SPG11-219ENST00000559822 RAPGEF4Q8WZA2 1011 aa16.99■□□□□ 0.31
SPG11-219ENST00000559822 MEGF6O75095 1541 aa16.99■□□□□ 0.31
SPG11-219ENST00000559822 RGPD2P0DJD1 1756 aa16.99■□□□□ 0.31
SPG11-219ENST00000559822 NBPF6Q5VWK0 638 aa16.98■□□□□ 0.31
SPG11-219ENST00000559822 NBPF4Q96M43 638 aa16.98■□□□□ 0.31
SPG11-219ENST00000559822 CARD14Q9BXL6 1004 aa16.98■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 67.3 ms