RNA–Protein interactions for RNA: ENST00000558988.5

SPG11-213, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

APPRIS ALT2 TSL 3

Gene SPG11, Length 620 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-213ENST00000558988 COL25A1Q9BXS0 654 aaPredicted RBP12.41□□□□□ -0.42
SPG11-213ENST00000558988 TNIKQ9UKE5 1360 aa12.41□□□□□ -0.42
SPG11-213ENST00000558988 ADAM23O75077 832 aa12.4□□□□□ -0.42
SPG11-213ENST00000558988 KANK3Q6NY19 840 aa12.4□□□□□ -0.42
SPG11-213ENST00000558988 ZFAND3Q9H8U3 227 aa12.4□□□□□ -0.42
SPG11-213ENST00000558988 VARSP26640 1264 aaKnown RBP12.39□□□□□ -0.43
SPG11-213ENST00000558988 UNC93B1Q9H1C4 597 aa12.39□□□□□ -0.43
SPG11-213ENST00000558988 ABCC10Q5T3U5 1492 aa12.39□□□□□ -0.43
SPG11-213ENST00000558988 DIP2BQ9P265 1576 aa12.39□□□□□ -0.43
SPG11-213ENST00000558988 TSPOAP1O95153 1857 aa12.38□□□□□ -0.43
SPG11-213ENST00000558988 MAPKBP1O60336 1514 aa12.38□□□□□ -0.43
SPG11-213ENST00000558988 KRTAP9-1A8MXZ3 250 aaPredicted RBP12.38□□□□□ -0.43
SPG11-213ENST00000558988 ARHGEF15O94989 841 aa12.38□□□□□ -0.43
SPG11-213ENST00000558988 CCNYL3P0C7X3 344 aa12.38□□□□□ -0.43
SPG11-213ENST00000558988 ZIC2O95409 532 aaPredicted RBP12.37□□□□□ -0.43
SPG11-213ENST00000558988 RETREG3Q86VR2 466 aa12.37□□□□□ -0.43
SPG11-213ENST00000558988 DISP1Q96F81 1524 aa12.37□□□□□ -0.43
SPG11-213ENST00000558988 MARSP56192 900 aaKnown RBP12.36□□□□□ -0.43
SPG11-213ENST00000558988 RNFT1Q5M7Z0 435 aa12.36□□□□□ -0.43
SPG11-213ENST00000558988 DNMT3LQ9UJW3 386 aa12.36□□□□□ -0.43
SPG11-213ENST00000558988 BMP2P12643 396 aa12.35□□□□□ -0.43
SPG11-213ENST00000558988 ZNF511Q8NB15 262 aa12.35□□□□□ -0.43
SPG11-213ENST00000558988 ITPKCQ96DU7 683 aa12.35□□□□□ -0.43
SPG11-213ENST00000558988 KRTAP9-2Q9BYQ4 174 aa12.35□□□□□ -0.43
SPG11-213ENST00000558988 KIAA0556O60303 1618 aa12.34□□□□□ -0.43
SPG11-213ENST00000558988 ABCC2Q92887 1545 aa12.34□□□□□ -0.43
SPG11-213ENST00000558988 CTTNBP2Q8WZ74 1663 aa12.34□□□□□ -0.43
SPG11-213ENST00000558988 UACAQ9BZF9 1416 aa12.34□□□□□ -0.43
SPG11-213ENST00000558988 UGGT2Q9NYU1 1516 aa12.33□□□□□ -0.44
SPG11-213ENST00000558988 MS4A1P11836 297 aa12.33□□□□□ -0.44
SPG11-213ENST00000558988 SOS2Q07890 1332 aaPredicted RBP12.33□□□□□ -0.44
SPG11-213ENST00000558988 ASXL2Q76L83 1435 aa12.32□□□□□ -0.44
SPG11-213ENST00000558988 PSMG3-AS1Q96PY0 264 aa12.32□□□□□ -0.44
SPG11-213ENST00000558988 FAM9AQ8IZU1 332 aaPredicted RBP12.31□□□□□ -0.44
SPG11-213ENST00000558988 SCARF2Q96GP6 870 aaPredicted RBP12.31□□□□□ -0.44
SPG11-213ENST00000558988 EVA1BQ9NVM1 165 aa12.31□□□□□ -0.44
SPG11-213ENST00000558988 MSTNO14793 375 aa12.3□□□□□ -0.44
SPG11-213ENST00000558988 SLURP2P0DP57 97 aa12.3□□□□□ -0.44
SPG11-213ENST00000558988 RANGAP1P46060 587 aaPredicted RBP12.3□□□□□ -0.44
SPG11-213ENST00000558988 LINC00528Q8N1L1 170 aa12.3□□□□□ -0.44
SPG11-213ENST00000558988 KRTAP9-6A0A140TA67 174 aa12.29□□□□□ -0.44
SPG11-213ENST00000558988 UPP2O95045 317 aa12.29□□□□□ -0.44
SPG11-213ENST00000558988 P3H3Q8IVL6 736 aa12.29□□□□□ -0.44
SPG11-213ENST00000558988 KDM6BO15054 1643 aa12.29□□□□□ -0.44
SPG11-213ENST00000558988 UHRF1BP1LA0JNW5 1464 aa12.28□□□□□ -0.44
SPG11-213ENST00000558988 PRXQ9BXM0 1461 aa12.28□□□□□ -0.44
SPG11-213ENST00000558988 ARID3CA6NKF2 412 aa12.28□□□□□ -0.44
SPG11-213ENST00000558988 NANOS1Q8WY41 292 aaKnown RBP12.28□□□□□ -0.44
SPG11-213ENST00000558988 PLB1Q6P1J6 1458 aa12.27□□□□□ -0.44
SPG11-213ENST00000558988 ZCCHC11Q5TAX3 1644 aaKnown RBP12.27□□□□□ -0.44
SPG11-213ENST00000558988 KCNH2Q12809 1159 aa12.27□□□□□ -0.45
SPG11-213ENST00000558988 PTPRNQ16849 979 aa12.27□□□□□ -0.45
SPG11-213ENST00000558988 FAM174AQ8TBP5 190 aa12.27□□□□□ -0.45
SPG11-213ENST00000558988 GOLGA3Q08378 1498 aa12.27□□□□□ -0.45
SPG11-213ENST00000558988 NR3C2P08235 984 aa12.26□□□□□ -0.45
SPG11-213ENST00000558988 PTSQ03393 145 aa12.26□□□□□ -0.45
SPG11-213ENST00000558988 ARID5BQ14865 1188 aa12.26□□□□□ -0.45
SPG11-213ENST00000558988 CDK15Q96Q40 435 aa12.26□□□□□ -0.45
SPG11-213ENST00000558988 SPOCK3Q9BQ16 436 aa12.26□□□□□ -0.45
SPG11-213ENST00000558988 PLA2G4EQ3MJ16 856 aa12.25□□□□□ -0.45
SPG11-213ENST00000558988 MEIOBQ8N635 442 aa12.25□□□□□ -0.45
SPG11-213ENST00000558988 TESPA1A2RU30 521 aaPredicted RBP12.24□□□□□ -0.45
SPG11-213ENST00000558988 KDM5BQ9UGL1 1544 aa12.24□□□□□ -0.45
SPG11-213ENST00000558988 ZNF800Q2TB10 664 aaPredicted RBP eCLIP12.23□□□□□ -0.45
SPG11-213ENST00000558988 TSHZ2Q9NRE2 1034 aa12.23□□□□□ -0.45
SPG11-213ENST00000558988 EPRSP07814 1512 aaKnown RBP12.22□□□□□ -0.45
SPG11-213ENST00000558988 C6orf229H3BNL8 230 aa12.22□□□□□ -0.45
SPG11-213ENST00000558988 PCDHGC3Q9UN70 934 aa12.22□□□□□ -0.45
SPG11-213ENST00000558988 ITGB2P05107 769 aa12.21□□□□□ -0.45
SPG11-213ENST00000558988 NR5A1Q13285 461 aa12.21□□□□□ -0.45
SPG11-213ENST00000558988 SMYD5Q6GMV2 418 aa12.21□□□□□ -0.45
SPG11-213ENST00000558988 GLI2P10070 1586 aa12.21□□□□□ -0.46
SPG11-213ENST00000558988 WDR7Q9Y4E6 1490 aa12.21□□□□□ -0.46
SPG11-213ENST00000558988 PPRC1Q5VV67 1664 aaKnown RBP12.2□□□□□ -0.46
SPG11-213ENST00000558988 MDM2Q00987 491 aaPredicted RBP12.2□□□□□ -0.46
SPG11-213ENST00000558988 CCDC155Q8N6L0 562 aa12.2□□□□□ -0.46
SPG11-213ENST00000558988 ABCA8O94911 1581 aa12.19□□□□□ -0.46
SPG11-213ENST00000558988 VWA5B2Q8N398 1253 aa12.19□□□□□ -0.46
SPG11-213ENST00000558988 GRM5P41594 1212 aa12.18□□□□□ -0.46
SPG11-213ENST00000558988 LYPD4Q6UWN0 246 aa12.18□□□□□ -0.46
SPG11-213ENST00000558988 Q8N3U1 123 aa12.18□□□□□ -0.46
SPG11-213ENST00000558988 TTLL8A6PVC2 850 aa12.17□□□□□ -0.46
SPG11-213ENST00000558988 SPTLC1O15269 473 aa12.17□□□□□ -0.46
SPG11-213ENST00000558988 FDX1P10109 184 aa12.17□□□□□ -0.46
SPG11-213ENST00000558988 FOXJ1Q92949 421 aa12.17□□□□□ -0.46
SPG11-213ENST00000558988 DCAF5Q96JK2 942 aa12.17□□□□□ -0.46
SPG11-213ENST00000558988 MAP3K4Q9Y6R4 1608 aa12.17□□□□□ -0.46
SPG11-213ENST00000558988 EEA1Q15075 1411 aa12.17□□□□□ -0.46
SPG11-213ENST00000558988 FIGNL2A6NMB9 653 aa12.16□□□□□ -0.46
SPG11-213ENST00000558988 PROCP04070 461 aa12.16□□□□□ -0.46
SPG11-213ENST00000558988 TEX14Q8IWB6 1497 aa12.15□□□□□ -0.46
SPG11-213ENST00000558988 NUTM1Q86Y26 1132 aa12.15□□□□□ -0.46
SPG11-213ENST00000558988 KRTAP1-3Q8IUG1 177 aa12.15□□□□□ -0.46
SPG11-213ENST00000558988 TSEN34Q9BSV6 310 aaKnown RBP12.14□□□□□ -0.47
SPG11-213ENST00000558988 COL17A1Q9UMD9 1497 aaPredicted RBP12.14□□□□□ -0.47
SPG11-213ENST00000558988 FHOD3Q2V2M9 1422 aa12.13□□□□□ -0.47
SPG11-213ENST00000558988 CDC14CA4D256 554 aa12.13□□□□□ -0.47
SPG11-213ENST00000558988 ADAMTS2O95450 1211 aa12.13□□□□□ -0.47
SPG11-213ENST00000558988 SAMD9Q5K651 1589 aa12.13□□□□□ -0.47
SPG11-213ENST00000558988 CD109Q6YHK3 1445 aa12.12□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms