RNA–Protein interactions for RNA: ENST00000557548.1

TRAV28-201, Transcript of T cell receptor alpha variable 28 (pseudogene), humanhuman

BASIC

Gene TRAV28, Length 323 nt, Biotype TR V pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV28-201ENST00000557548 LMOD1P29536 600 aaPredicted RBP5.33□□□□□ -1.56
TRAV28-201ENST00000557548 VEGFBP49765 207 aa5.33□□□□□ -1.56
TRAV28-201ENST00000557548 KCNA1Q09470 495 aa5.33□□□□□ -1.56
TRAV28-201ENST00000557548 SWT1Q5T5J6 900 aaKnown RBP5.33□□□□□ -1.56
TRAV28-201ENST00000557548 UCN2Q96RP3 112 aa5.33□□□□□ -1.56
TRAV28-201ENST00000557548 ALG2Q9H553 416 aa5.33□□□□□ -1.56
TRAV28-201ENST00000557548 C6orf229H3BNL8 230 aa5.32□□□□□ -1.56
TRAV28-201ENST00000557548 ZNF428Q96B54 188 aa5.32□□□□□ -1.56
TRAV28-201ENST00000557548 RNF40O75150 1001 aa5.31□□□□□ -1.56
TRAV28-201ENST00000557548 S1PR4O95977 384 aa5.31□□□□□ -1.56
TRAV28-201ENST00000557548 RBM25P49756 843 aaKnown RBP5.31□□□□□ -1.56
TRAV28-201ENST00000557548 HDGFP51858 240 aaKnown RBP5.31□□□□□ -1.56
TRAV28-201ENST00000557548 CDCA8Q53HL2 280 aa5.31□□□□□ -1.56
TRAV28-201ENST00000557548 PRR7Q8TB68 274 aa5.31□□□□□ -1.56
TRAV28-201ENST00000557548 TFIP11Q9UBB9 837 aaKnown RBP5.31□□□□□ -1.56
TRAV28-201ENST00000557548 FUT2Q10981 343 aa5.3□□□□□ -1.56
TRAV28-201ENST00000557548 NR6A1Q15406 480 aa5.3□□□□□ -1.56
TRAV28-201ENST00000557548 SYMPKQ92797 1274 aaKnown RBP5.3□□□□□ -1.56
TRAV28-201ENST00000557548 ADAMTS8Q9UP79 889 aa5.3□□□□□ -1.56
TRAV28-201ENST00000557548 TTC24A2A3L6 582 aaPredicted RBP5.29□□□□□ -1.56
TRAV28-201ENST00000557548 CFHP08603 1231 aa5.29□□□□□ -1.56
TRAV28-201ENST00000557548 SOX11P35716 441 aa5.29□□□□□ -1.56
TRAV28-201ENST00000557548 SEMA3FQ13275 785 aa5.29□□□□□ -1.56
TRAV28-201ENST00000557548 SLF2Q8IX21 1173 aa5.29□□□□□ -1.56
TRAV28-201ENST00000557548 MAFBQ9Y5Q3 323 aaPredicted RBP5.29□□□□□ -1.56
TRAV28-201ENST00000557548 IVNS1ABPQ9Y6Y0 642 aa5.29□□□□□ -1.56
TRAV28-201ENST00000557548 TMEM88BA6NKF7 163 aa5.28□□□□□ -1.56
TRAV28-201ENST00000557548 PER1O15534 1290 aaPredicted RBP5.28□□□□□ -1.56
TRAV28-201ENST00000557548 GRIPAP1Q4V328 841 aa5.28□□□□□ -1.56
TRAV28-201ENST00000557548 PLA2G2CQ5R387 149 aa5.28□□□□□ -1.56
TRAV28-201ENST00000557548 TBC1D9Q6ZT07 1266 aa5.28□□□□□ -1.56
TRAV28-201ENST00000557548 VRTNQ9H8Y1 702 aa5.28□□□□□ -1.56
TRAV28-201ENST00000557548 MSTNO14793 375 aa5.27□□□□□ -1.57
TRAV28-201ENST00000557548 ATG7O95352 703 aa5.27□□□□□ -1.57
TRAV28-201ENST00000557548 SLC4A3P48751 1232 aa5.27□□□□□ -1.57
TRAV28-201ENST00000557548 LCE1DQ5T752 114 aa5.27□□□□□ -1.57
TRAV28-201ENST00000557548 KANK3Q6NY19 840 aa5.27□□□□□ -1.57
TRAV28-201ENST00000557548 ATP9BO43861 1147 aa5.26□□□□□ -1.57
TRAV28-201ENST00000557548 VSIG8P0DPA2 414 aa5.26□□□□□ -1.57
TRAV28-201ENST00000557548 IRS1P35568 1242 aa5.26□□□□□ -1.57
TRAV28-201ENST00000557548 ATP6V1AP38606 617 aa5.26□□□□□ -1.57
TRAV28-201ENST00000557548 EIF4G2P78344 907 aaKnown RBP eCLIP5.26□□□□□ -1.57
TRAV28-201ENST00000557548 CCDC27Q2M243 656 aa5.26□□□□□ -1.57
TRAV28-201ENST00000557548 PNMA1Q8ND90 353 aa5.26□□□□□ -1.57
TRAV28-201ENST00000557548 PCDHB3Q9Y5E6 796 aa5.26□□□□□ -1.57
TRAV28-201ENST00000557548 TLL1O43897 1013 aa5.25□□□□□ -1.57
TRAV28-201ENST00000557548 RPIAP49247 311 aa5.25□□□□□ -1.57
TRAV28-201ENST00000557548 SND1Q7KZF4 910 aaKnown RBP eCLIP5.25□□□□□ -1.57
TRAV28-201ENST00000557548 PRR14Q9BWN1 585 aa5.25□□□□□ -1.57
TRAV28-201ENST00000557548 PIK3CDO00329 1044 aa5.24□□□□□ -1.57
TRAV28-201ENST00000557548 CD2BP2O95400 341 aaKnown RBP5.24□□□□□ -1.57
TRAV28-201ENST00000557548 SMPD1P17405 629 aa5.24□□□□□ -1.57
TRAV28-201ENST00000557548 RETREG3Q86VR2 466 aa5.24□□□□□ -1.57
TRAV28-201ENST00000557548 KRTAP19-1Q8IUB9 90 aa5.24□□□□□ -1.57
TRAV28-201ENST00000557548 K7ELQ4 463 aaPredicted RBP5.23□□□□□ -1.57
TRAV28-201ENST00000557548 FBXO45P0C2W1 286 aa5.23□□□□□ -1.57
TRAV28-201ENST00000557548 NR1H3Q13133 447 aa5.23□□□□□ -1.57
TRAV28-201ENST00000557548 PUS10Q3MIT2 529 aaKnown RBP5.23□□□□□ -1.57
TRAV28-201ENST00000557548 E9PSI1 815 aa5.22□□□□□ -1.57
TRAV28-201ENST00000557548 KMT5BQ4FZB7 885 aa5.22□□□□□ -1.57
TRAV28-201ENST00000557548 MORN1Q5T089 497 aa5.22□□□□□ -1.57
TRAV28-201ENST00000557548 KANK4Q5T7N3 995 aaPredicted RBP5.22□□□□□ -1.57
TRAV28-201ENST00000557548 DESI1Q6ICB0 168 aa5.22□□□□□ -1.57
TRAV28-201ENST00000557548 BLOC1S3Q6QNY0 202 aa5.22□□□□□ -1.57
TRAV28-201ENST00000557548 STK32AQ8WU08 396 aa5.22□□□□□ -1.57
TRAV28-201ENST00000557548 ZMIZ1Q9ULJ6 1067 aa5.22□□□□□ -1.57
TRAV28-201ENST00000557548 SLC27A5Q9Y2P5 690 aa5.22□□□□□ -1.57
TRAV28-201ENST00000557548 USP17L3A6NCW0 530 aa5.21□□□□□ -1.58
TRAV28-201ENST00000557548 USP17L4A6NCW7 530 aa5.21□□□□□ -1.58
TRAV28-201ENST00000557548 ZBBXA8MT70 800 aa5.21□□□□□ -1.58
TRAV28-201ENST00000557548 Q3C1V9 767 aa5.21□□□□□ -1.58
TRAV28-201ENST00000557548 TMEM164Q5U3C3 297 aa5.21□□□□□ -1.58
TRAV28-201ENST00000557548 B4GALNT3Q6L9W6 998 aa5.21□□□□□ -1.58
TRAV28-201ENST00000557548 USP17L2Q6R6M4 530 aa5.21□□□□□ -1.58
TRAV28-201ENST00000557548 LYPD8Q6UX82 237 aa5.21□□□□□ -1.58
TRAV28-201ENST00000557548 USP17L1Q7RTZ2 530 aa5.21□□□□□ -1.58
TRAV28-201ENST00000557548 NOVA2Q9UNW9 492 aaKnown RBP5.21□□□□□ -1.58
TRAV28-201ENST00000557548 GNEQ9Y223 722 aaKnown RBP5.21□□□□□ -1.58
TRAV28-201ENST00000557548 USP17L5A8MUK1 530 aa5.2□□□□□ -1.58
TRAV28-201ENST00000557548 SKIP12755 728 aa5.2□□□□□ -1.58
TRAV28-201ENST00000557548 ELOAQ14241 798 aaKnown RBP5.2□□□□□ -1.58
TRAV28-201ENST00000557548 RNF19BQ6ZMZ0 732 aa5.2□□□□□ -1.58
TRAV28-201ENST00000557548 SNIP1Q8TAD8 396 aaKnown RBP5.2□□□□□ -1.58
TRAV28-201ENST00000557548 FAM174AQ8TBP5 190 aa5.2□□□□□ -1.58
TRAV28-201ENST00000557548 SPOCK3Q9BQ16 436 aa5.2□□□□□ -1.58
TRAV28-201ENST00000557548 FKBPLQ9UIM3 349 aa5.2□□□□□ -1.58
TRAV28-201ENST00000557548 ACTN4O43707 911 aaKnown RBP5.19□□□□□ -1.58
TRAV28-201ENST00000557548 ADH1BP00325 375 aa5.19□□□□□ -1.58
TRAV28-201ENST00000557548 DEPDC4Q8N2C3 294 aa5.19□□□□□ -1.58
TRAV28-201ENST00000557548 NFATC2IPQ8NCF5 419 aa5.19□□□□□ -1.58
TRAV28-201ENST00000557548 SLC6A16Q9GZN6 736 aa5.19□□□□□ -1.58
TRAV28-201ENST00000557548 GOLGA2P5Q9HBQ8 144 aa5.19□□□□□ -1.58
TRAV28-201ENST00000557548 MAP10Q9P2G4 905 aa5.19□□□□□ -1.58
TRAV28-201ENST00000557548 AMOTL2Q9Y2J4 779 aa5.19□□□□□ -1.58
TRAV28-201ENST00000557548 USP17L15C9J2P7 530 aa5.18□□□□□ -1.58
TRAV28-201ENST00000557548 USP17L10C9JJH3 530 aa5.18□□□□□ -1.58
TRAV28-201ENST00000557548 USP17L13C9JLJ4 530 aa5.18□□□□□ -1.58
TRAV28-201ENST00000557548 USP17L12C9JPN9 530 aa5.18□□□□□ -1.58
TRAV28-201ENST00000557548 USP17L11C9JVI0 530 aa5.18□□□□□ -1.58
TRAV28-201ENST00000557548 USP17L21D6R901 530 aa5.18□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 8.6 ms