RNA–Protein interactions for RNA: ENST00000556825.5

SHMT2-226, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,215 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-226ENST00000556825 ANKRD30BQ9BXX2 1392 aa16.7■□□□□ 0.26
SHMT2-226ENST00000556825 SYT10Q6XYQ8 523 aa16.7■□□□□ 0.26
SHMT2-226ENST00000556825 C10orf67Q8IYJ2 551 aa16.7■□□□□ 0.26
SHMT2-226ENST00000556825 MED4Q9NPJ6 270 aa16.7■□□□□ 0.26
SHMT2-226ENST00000556825 E9PCH4 1651 aa16.7■□□□□ 0.26
SHMT2-226ENST00000556825 SMTNL1A8MU46 457 aa16.69■□□□□ 0.26
SHMT2-226ENST00000556825 SRPK2P78362 688 aaKnown RBP16.69■□□□□ 0.26
SHMT2-226ENST00000556825 OSCARQ8IYS5 282 aa16.69■□□□□ 0.26
SHMT2-226ENST00000556825 PRPF40AO75400 957 aaKnown RBP16.69■□□□□ 0.26
SHMT2-226ENST00000556825 MPNDQ8N594 471 aa16.69■□□□□ 0.26
SHMT2-226ENST00000556825 GOLGA6L1Q8N7Z2 621 aa16.69■□□□□ 0.26
SHMT2-226ENST00000556825 GAS2L2Q8NHY3 880 aa16.69■□□□□ 0.26
SHMT2-226ENST00000556825 CXorf56Q9H5V9 222 aa16.69■□□□□ 0.26
SHMT2-226ENST00000556825 CFAP65Q6ZU64 1925 aaKnown RBP16.68■□□□□ 0.26
SHMT2-226ENST00000556825 PTPRGP23470 1445 aa16.68■□□□□ 0.26
SHMT2-226ENST00000556825 TDO2P48775 406 aa16.68■□□□□ 0.26
SHMT2-226ENST00000556825 TXLNBQ8N3L3 684 aa16.68■□□□□ 0.26
SHMT2-226ENST00000556825 TRIM66O15016 1216 aa16.68■□□□□ 0.26
SHMT2-226ENST00000556825 CLSTN1O94985 981 aa16.68■□□□□ 0.26
SHMT2-226ENST00000556825 RWDD1Q9H446 243 aaPredicted RBP16.68■□□□□ 0.26
SHMT2-226ENST00000556825 ATG3Q9NT62 314 aa16.68■□□□□ 0.26
SHMT2-226ENST00000556825 COG6Q9Y2V7 657 aa16.68■□□□□ 0.26
SHMT2-226ENST00000556825 ANKRD30AQ9BXX3 1397 aa16.67■□□□□ 0.26
SHMT2-226ENST00000556825 CYP2E1P05181 493 aaPredicted RBP16.67■□□□□ 0.26
SHMT2-226ENST00000556825 SEMA3FQ13275 785 aa16.67■□□□□ 0.26
SHMT2-226ENST00000556825 SUFUQ9UMX1 484 aa16.67■□□□□ 0.26
SHMT2-226ENST00000556825 NKTRP30414 1462 aaKnown RBP16.67■□□□□ 0.26
SHMT2-226ENST00000556825 SHROOM2Q13796 1616 aa16.67■□□□□ 0.26
SHMT2-226ENST00000556825 GSCP56915 257 aaPredicted RBP16.66■□□□□ 0.26
SHMT2-226ENST00000556825 CCDC91Q7Z6B0 441 aa16.66■□□□□ 0.26
SHMT2-226ENST00000556825 DRC1Q96MC2 740 aa16.66■□□□□ 0.26
SHMT2-226ENST00000556825 A0A1B0GUL7 405 aa16.66■□□□□ 0.26
SHMT2-226ENST00000556825 TPM3P06753 285 aa16.66■□□□□ 0.26
SHMT2-226ENST00000556825 ATP2B1P20020 1258 aa16.66■□□□□ 0.26
SHMT2-226ENST00000556825 KMT5BQ4FZB7 885 aa16.66■□□□□ 0.26
SHMT2-226ENST00000556825 SGSM3Q96HU1 749 aa16.66■□□□□ 0.26
SHMT2-226ENST00000556825 ST7Q9NRC1 585 aa16.66■□□□□ 0.26
SHMT2-226ENST00000556825 PCDHB15Q9Y5E8 787 aa16.66■□□□□ 0.26
SHMT2-226ENST00000556825 PLEKHD1A6NEE1 506 aa16.65■□□□□ 0.26
SHMT2-226ENST00000556825 CD2BP2O95400 341 aaKnown RBP16.65■□□□□ 0.26
SHMT2-226ENST00000556825 RBM6P78332 1123 aaKnown RBP16.65■□□□□ 0.26
SHMT2-226ENST00000556825 TSGA10IPQ3SY00 556 aa16.65■□□□□ 0.26
SHMT2-226ENST00000556825 FAM184AQ8NB25 1140 aa16.65■□□□□ 0.26
SHMT2-226ENST00000556825 KIF2CQ99661 725 aa16.65■□□□□ 0.26
SHMT2-226ENST00000556825 STK26Q9P289 416 aa16.65■□□□□ 0.26
SHMT2-226ENST00000556825 ADCY10Q96PN6 1610 aa16.65■□□□□ 0.26
SHMT2-226ENST00000556825 CCDC189A1A4V9 331 aa16.65■□□□□ 0.26
SHMT2-226ENST00000556825 ZNF853P0CG23 659 aa16.65■□□□□ 0.26
SHMT2-226ENST00000556825 ATP10BO94823 1461 aa16.64■□□□□ 0.25
SHMT2-226ENST00000556825 PANK1Q8TE04 598 aa16.64■□□□□ 0.25
SHMT2-226ENST00000556825 RBM28Q9NW13 759 aaKnown RBP16.64■□□□□ 0.25
SHMT2-226ENST00000556825 ZNF644Q9H582 1327 aaPredicted RBP16.64■□□□□ 0.25
SHMT2-226ENST00000556825 ADCY5O95622 1261 aa16.64■□□□□ 0.25
SHMT2-226ENST00000556825 MBD3O95983 291 aa16.64■□□□□ 0.25
SHMT2-226ENST00000556825 DNAJC21Q5F1R6 531 aaKnown RBP16.64■□□□□ 0.25
SHMT2-226ENST00000556825 DEF6Q9H4E7 631 aa16.64■□□□□ 0.25
SHMT2-226ENST00000556825 ADAMTS8Q9UP79 889 aa16.64■□□□□ 0.25
SHMT2-226ENST00000556825 NAA30Q147X3 362 aaPredicted RBP16.63■□□□□ 0.25
SHMT2-226ENST00000556825 LCMT1Q9UIC8 334 aa16.63■□□□□ 0.25
SHMT2-226ENST00000556825 PYCARDQ9ULZ3 195 aa16.63■□□□□ 0.25
SHMT2-226ENST00000556825 KRBA2Q6ZNG9 492 aa16.62■□□□□ 0.25
SHMT2-226ENST00000556825 PAXBP1Q9Y5B6 917 aa16.62■□□□□ 0.25
SHMT2-226ENST00000556825 ITSN2Q9NZM3 1697 aa16.62■□□□□ 0.25
SHMT2-226ENST00000556825 DAPK1P53355 1430 aa16.62■□□□□ 0.25
SHMT2-226ENST00000556825 MBD5Q9P267 1494 aa16.62■□□□□ 0.25
SHMT2-226ENST00000556825 CWC15Q9P013 229 aaKnown RBP16.62■□□□□ 0.25
SHMT2-226ENST00000556825 KIF14Q15058 1648 aa16.62■□□□□ 0.25
SHMT2-226ENST00000556825 CLASP1Q7Z460 1538 aa16.62■□□□□ 0.25
SHMT2-226ENST00000556825 SLFNL1Q499Z3 407 aa16.61■□□□□ 0.25
SHMT2-226ENST00000556825 CDCA8Q53HL2 280 aa16.61■□□□□ 0.25
SHMT2-226ENST00000556825 TEX35Q5T0J7 233 aa16.61■□□□□ 0.25
SHMT2-226ENST00000556825 SWT1Q5T5J6 900 aaKnown RBP16.61■□□□□ 0.25
SHMT2-226ENST00000556825 ABCC5O15440 1437 aa16.61■□□□□ 0.25
SHMT2-226ENST00000556825 BMS1Q14692 1282 aaKnown RBP16.61■□□□□ 0.25
SHMT2-226ENST00000556825 USP25Q9UHP3 1055 aa16.61■□□□□ 0.25
SHMT2-226ENST00000556825 SART3Q15020 963 aaKnown RBP16.6■□□□□ 0.25
SHMT2-226ENST00000556825 TTC31Q49AM3 519 aaPredicted RBP16.6■□□□□ 0.25
SHMT2-226ENST00000556825 CFDP1Q9UEE9 299 aaPredicted RBP16.6■□□□□ 0.25
SHMT2-226ENST00000556825 DNMT1P26358 1616 aaKnown RBP16.6■□□□□ 0.25
SHMT2-226ENST00000556825 NOM1Q5C9Z4 860 aaKnown RBP16.6■□□□□ 0.25
SHMT2-226ENST00000556825 NBPF11Q86T75 865 aa16.6■□□□□ 0.25
SHMT2-226ENST00000556825 SRLQ86TD4 932 aa16.6■□□□□ 0.25
SHMT2-226ENST00000556825 CCDC112Q8NEF3 446 aa16.6■□□□□ 0.25
SHMT2-226ENST00000556825 KCNF1Q9H3M0 494 aa16.6■□□□□ 0.25
SHMT2-226ENST00000556825 NSFL1CQ9UNZ2 370 aaKnown RBP16.6■□□□□ 0.25
SHMT2-226ENST00000556825 GPATCH8Q9UKJ3 1502 aaKnown RBP16.59■□□□□ 0.25
SHMT2-226ENST00000556825 CCDC191Q8NCU4 936 aa16.59■□□□□ 0.25
SHMT2-226ENST00000556825 NEK11Q8NG66 645 aa16.59■□□□□ 0.25
SHMT2-226ENST00000556825 PER1O15534 1290 aaPredicted RBP16.58■□□□□ 0.25
SHMT2-226ENST00000556825 NBPF9Q3BBW0 867 aa16.58■□□□□ 0.25
SHMT2-226ENST00000556825 ZNF592Q92610 1267 aa16.58■□□□□ 0.24
SHMT2-226ENST00000556825 UHRF1BP1LA0JNW5 1464 aa16.57■□□□□ 0.24
SHMT2-226ENST00000556825 ROCK1Q13464 1354 aa16.57■□□□□ 0.24
SHMT2-226ENST00000556825 PPP1R12AO14974 1030 aaPredicted RBP16.57■□□□□ 0.24
SHMT2-226ENST00000556825 NBPF10Q6P3W6 841 aaKnown RBP16.57■□□□□ 0.24
SHMT2-226ENST00000556825 SUGP1Q8IWZ8 645 aaKnown RBP16.57■□□□□ 0.24
SHMT2-226ENST00000556825 SYAP1Q96A49 352 aaPredicted RBP16.57■□□□□ 0.24
SHMT2-226ENST00000556825 ANKRD36BQ8N2N9 1353 aa16.57■□□□□ 0.24
SHMT2-226ENST00000556825 LRCH2Q5VUJ6 765 aa16.57■□□□□ 0.24
SHMT2-226ENST00000556825 FBXO38Q6PIJ6 1188 aa16.57■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms