RNA–Protein interactions for RNA: ENST00000555953.1

SCFD1-217, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 497 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-217ENST00000555953 H3BM21 787 aa10.13□□□□□ -0.79
SCFD1-217ENST00000555953 RFC5P40937 340 aa10.13□□□□□ -0.79
SCFD1-217ENST00000555953 NPAS3Q8IXF0 933 aa10.13□□□□□ -0.79
SCFD1-217ENST00000555953 LINC00528Q8N1L1 170 aa10.13□□□□□ -0.79
SCFD1-217ENST00000555953 EMILIN1Q9Y6C2 1016 aa10.13□□□□□ -0.79
SCFD1-217ENST00000555953 NEUROD2Q15784 382 aa10.12□□□□□ -0.79
SCFD1-217ENST00000555953 SLC10A4Q96EP9 437 aa10.12□□□□□ -0.79
SCFD1-217ENST00000555953 BMP2P12643 396 aa10.11□□□□□ -0.79
SCFD1-217ENST00000555953 PPP1R26Q5T8A7 1209 aaPredicted RBP10.11□□□□□ -0.79
SCFD1-217ENST00000555953 ZBTB33Q86T24 672 aa10.11□□□□□ -0.79
SCFD1-217ENST00000555953 GOPCQ9HD26 462 aa10.11□□□□□ -0.79
SCFD1-217ENST00000555953 UPP2O95045 317 aa10.1□□□□□ -0.79
SCFD1-217ENST00000555953 PTK2Q05397 1052 aa10.1□□□□□ -0.79
SCFD1-217ENST00000555953 KCTD15Q96SI1 283 aaPredicted RBP10.1□□□□□ -0.79
SCFD1-217ENST00000555953 ERBB4Q15303 1308 aa10.09□□□□□ -0.79
SCFD1-217ENST00000555953 GMPRP36959 345 aa10.09□□□□□ -0.79
SCFD1-217ENST00000555953 INSM1Q01101 510 aaPredicted RBP10.09□□□□□ -0.79
SCFD1-217ENST00000555953 ADAM32Q8TC27 787 aa10.09□□□□□ -0.79
SCFD1-217ENST00000555953 IRF7Q92985 503 aa10.09□□□□□ -0.79
SCFD1-217ENST00000555953 PCMTD1Q96MG8 357 aaPredicted RBP10.09□□□□□ -0.79
SCFD1-217ENST00000555953 GPSM3Q9Y4H4 160 aa10.09□□□□□ -0.79
SCFD1-217ENST00000555953 MAN1A2O60476 641 aa10.08□□□□□ -0.8
SCFD1-217ENST00000555953 IL27Q8NEV9 243 aa10.08□□□□□ -0.8
SCFD1-217ENST00000555953 CDV3Q9UKY7 258 aaKnown RBP10.08□□□□□ -0.8
SCFD1-217ENST00000555953 CBLBQ13191 982 aa10.07□□□□□ -0.8
SCFD1-217ENST00000555953 INTS6LQ5JSJ4 861 aaKnown RBP10.07□□□□□ -0.8
SCFD1-217ENST00000555953 TSEN34Q9BSV6 310 aaKnown RBP10.07□□□□□ -0.8
SCFD1-217ENST00000555953 SOS2Q07890 1332 aaPredicted RBP10.07□□□□□ -0.8
SCFD1-217ENST00000555953 TRIM34Q9BYJ4 488 aa10.06□□□□□ -0.8
SCFD1-217ENST00000555953 PGPEP1Q9NXJ5 209 aa10.06□□□□□ -0.8
SCFD1-217ENST00000555953 STK17AQ9UEE5 414 aa10.06□□□□□ -0.8
SCFD1-217ENST00000555953 DNMT3LQ9UJW3 386 aa10.06□□□□□ -0.8
SCFD1-217ENST00000555953 BRPF1P55201 1214 aaPredicted RBP10.05□□□□□ -0.8
SCFD1-217ENST00000555953 Q6ZVU0 165 aa10.05□□□□□ -0.8
SCFD1-217ENST00000555953 PNMA1Q8ND90 353 aa10.05□□□□□ -0.8
SCFD1-217ENST00000555953 TMEM259Q4ZIN3 620 aa10.04□□□□□ -0.8
SCFD1-217ENST00000555953 DHX9Q08211 1270 aaKnown RBP10.03□□□□□ -0.8
SCFD1-217ENST00000555953 TTLL8A6PVC2 850 aa10.01□□□□□ -0.81
SCFD1-217ENST00000555953 LORP23490 312 aaPredicted RBP10.01□□□□□ -0.81
SCFD1-217ENST00000555953 NBPF20Q3BBV1 942 aa10.01□□□□□ -0.81
SCFD1-217ENST00000555953 SPINT1O43278 529 aa10□□□□□ -0.81
SCFD1-217ENST00000555953 PPFIA3O75145 1194 aa10□□□□□ -0.81
SCFD1-217ENST00000555953 VSIG8P0DPA2 414 aa10□□□□□ -0.81
SCFD1-217ENST00000555953 RAB15P59190 212 aa10□□□□□ -0.81
SCFD1-217ENST00000555953 DZIP3Q86Y13 1208 aaKnown RBP10□□□□□ -0.81
SCFD1-217ENST00000555953 GJD4Q96KN9 370 aaPredicted RBP10□□□□□ -0.81
SCFD1-217ENST00000555953 AGBL1Q96MI9 1066 aa10□□□□□ -0.81
SCFD1-217ENST00000555953 TMPRSS4Q9NRS4 437 aa10□□□□□ -0.81
SCFD1-217ENST00000555953 FIGNL2A6NMB9 653 aa9.97□□□□□ -0.81
SCFD1-217ENST00000555953 ESPNB1AK53 854 aa9.97□□□□□ -0.81
SCFD1-217ENST00000555953 ERVH48-1M5A8F1 160 aa9.97□□□□□ -0.81
SCFD1-217ENST00000555953 RELBQ01201 579 aa9.97□□□□□ -0.81
SCFD1-217ENST00000555953 ZNF800Q2TB10 664 aaPredicted RBP eCLIP9.97□□□□□ -0.81
SCFD1-217ENST00000555953 ZNF784Q8NCA9 323 aaPredicted RBP9.97□□□□□ -0.81
SCFD1-217ENST00000555953 ZSCAN1Q8NBB4 408 aa9.96□□□□□ -0.82
SCFD1-217ENST00000555953 LILRA1O75019 489 aa9.95□□□□□ -0.82
SCFD1-217ENST00000555953 INSM2Q96T92 566 aaPredicted RBP9.95□□□□□ -0.82
SCFD1-217ENST00000555953 ZBBXA8MT70 800 aa9.94□□□□□ -0.82
SCFD1-217ENST00000555953 FBXO45P0C2W1 286 aa9.94□□□□□ -0.82
SCFD1-217ENST00000555953 ADD1P35611 737 aaKnown RBP9.94□□□□□ -0.82
SCFD1-217ENST00000555953 CTSOP43234 321 aaPredicted RBP9.94□□□□□ -0.82
SCFD1-217ENST00000555953 PTSQ03393 145 aa9.94□□□□□ -0.82
SCFD1-217ENST00000555953 TPRNQ4KMQ1 711 aa9.94□□□□□ -0.82
SCFD1-217ENST00000555953 ADH1AP07327 375 aa9.93□□□□□ -0.82
SCFD1-217ENST00000555953 ZNF395Q9H8N7 513 aaPredicted RBP9.93□□□□□ -0.82
SCFD1-217ENST00000555953 KDF1Q8NAX2 398 aaPredicted RBP9.92□□□□□ -0.82
SCFD1-217ENST00000555953 PCDHB9Q9Y5E1 797 aa9.92□□□□□ -0.82
SCFD1-217ENST00000555953 SEPT12Q8IYM1 358 aa9.91□□□□□ -0.82
SCFD1-217ENST00000555953 MTMR14Q8NCE2 650 aa9.91□□□□□ -0.82
SCFD1-217ENST00000555953 GPR37L1O60883 481 aa9.9□□□□□ -0.82
SCFD1-217ENST00000555953 GIGYF1O75420 1035 aaPredicted RBP9.9□□□□□ -0.82
SCFD1-217ENST00000555953 BANK1Q8NDB2 785 aa9.9□□□□□ -0.82
SCFD1-217ENST00000555953 POLMQ9NP87 494 aaPredicted RBP9.9□□□□□ -0.82
SCFD1-217ENST00000555953 CYLDQ9NQC7 956 aa9.9□□□□□ -0.82
SCFD1-217ENST00000555953 PTGIRP43119 386 aa9.89□□□□□ -0.83
SCFD1-217ENST00000555953 CCDC155Q8N6L0 562 aa9.89□□□□□ -0.83
SCFD1-217ENST00000555953 RNF217Q8TC41 542 aa9.89□□□□□ -0.83
SCFD1-217ENST00000555953 FAM181BA6NEQ2 426 aa9.88□□□□□ -0.83
SCFD1-217ENST00000555953 FOXD4L5Q5VV16 416 aaPredicted RBP9.88□□□□□ -0.83
SCFD1-217ENST00000555953 GPR161Q8N6U8 529 aaKnown RBP9.88□□□□□ -0.83
SCFD1-217ENST00000555953 SNRKQ9NRH2 765 aa9.88□□□□□ -0.83
SCFD1-217ENST00000555953 SLC35F4A4IF30 521 aa9.87□□□□□ -0.83
SCFD1-217ENST00000555953 NR1H3Q13133 447 aa9.87□□□□□ -0.83
SCFD1-217ENST00000555953 SOCS7O14512 581 aa9.86□□□□□ -0.83
SCFD1-217ENST00000555953 KRT76Q01546 638 aa9.85□□□□□ -0.83
SCFD1-217ENST00000555953 NDUFB9Q9Y6M9 179 aa9.85□□□□□ -0.83
SCFD1-217ENST00000555953 SENP3-EIF4A1A0A087X0R7 540 aa9.84□□□□□ -0.83
SCFD1-217ENST00000555953 NANOS1Q8WY41 292 aaKnown RBP9.84□□□□□ -0.83
SCFD1-217ENST00000555953 ITGA6P23229 1130 aa9.83□□□□□ -0.84
SCFD1-217ENST00000555953 ATP5J2-PTCD1G3V325 749 aa9.81□□□□□ -0.84
SCFD1-217ENST00000555953 ERVK-9P63128 1117 aa9.81□□□□□ -0.84
SCFD1-217ENST00000555953 VWA5B2Q8N398 1253 aa9.81□□□□□ -0.84
SCFD1-217ENST00000555953 CNTNAP3BQ96NU0 1288 aa9.81□□□□□ -0.84
SCFD1-217ENST00000555953 COL25A1Q9BXS0 654 aaPredicted RBP9.81□□□□□ -0.84
SCFD1-217ENST00000555953 CNTNAP3Q9BZ76 1288 aa9.81□□□□□ -0.84
SCFD1-217ENST00000555953 MCCD1P59942 119 aaPredicted RBP9.8□□□□□ -0.84
SCFD1-217ENST00000555953 RNF20Q5VTR2 975 aa9.8□□□□□ -0.84
SCFD1-217ENST00000555953 CC2D2BQ6DHV5 1058 aa9.8□□□□□ -0.84
SCFD1-217ENST00000555953 LYSMD3Q7Z3D4 306 aa9.8□□□□□ -0.84
SCFD1-217ENST00000555953 CCDC125Q86Z20 511 aa9.8□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms