RNA–Protein interactions for RNA: ENST00000555880.5

TDP1-213, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 5 BASIC

Gene TDP1, Length 1,894 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-213ENST00000555880 KIF20BQ96Q89 1820 aa8.92□□□□□ -0.98
TDP1-213ENST00000555880 HDGFL2Q7Z4V5 671 aaPredicted RBP8.92□□□□□ -0.98
TDP1-213ENST00000555880 BCL2L13Q9BXK5 485 aa8.92□□□□□ -0.98
TDP1-213ENST00000555880 TRIM35Q9UPQ4 493 aa8.92□□□□□ -0.98
TDP1-213ENST00000555880 PTPRMP28827 1452 aa8.92□□□□□ -0.98
TDP1-213ENST00000555880 TSPOAP1O95153 1857 aa8.92□□□□□ -0.98
TDP1-213ENST00000555880 MVPQ14764 893 aaKnown RBP8.91□□□□□ -0.98
TDP1-213ENST00000555880 YTHDC2Q9H6S0 1430 aaKnown RBP8.91□□□□□ -0.98
TDP1-213ENST00000555880 RLBP1P12271 317 aa8.91□□□□□ -0.98
TDP1-213ENST00000555880 MLECQ14165 292 aa8.91□□□□□ -0.98
TDP1-213ENST00000555880 GSE1Q14687 1217 aa8.91□□□□□ -0.98
TDP1-213ENST00000555880 IFNLR1Q8IU57 520 aaPredicted RBP8.91□□□□□ -0.98
TDP1-213ENST00000555880 DZIP1LQ8IYY4 767 aaKnown RBP8.91□□□□□ -0.98
TDP1-213ENST00000555880 PRAM1Q96QH2 718 aa8.91□□□□□ -0.98
TDP1-213ENST00000555880 GGNBP2Q9H3C7 697 aa8.91□□□□□ -0.98
TDP1-213ENST00000555880 SMC4Q9NTJ3 1288 aa8.91□□□□□ -0.98
TDP1-213ENST00000555880 IL16Q14005 1332 aa8.91□□□□□ -0.98
TDP1-213ENST00000555880 MINK1Q8N4C8 1332 aaPredicted RBP8.91□□□□□ -0.98
TDP1-213ENST00000555880 COL3A1P02461 1466 aaPredicted RBP8.91□□□□□ -0.98
TDP1-213ENST00000555880 PCDHB15Q9Y5E8 787 aa8.9□□□□□ -0.98
TDP1-213ENST00000555880 TMPOP42166 694 aaKnown RBP8.89□□□□□ -0.99
TDP1-213ENST00000555880 TMEM106CQ9BVX2 250 aa8.89□□□□□ -0.99
TDP1-213ENST00000555880 DIAPH1O60610 1272 aaKnown RBP8.89□□□□□ -0.99
TDP1-213ENST00000555880 TSR2Q969E8 191 aaKnown RBP8.89□□□□□ -0.99
TDP1-213ENST00000555880 DDX19BQ9UMR2 479 aa8.89□□□□□ -0.99
TDP1-213ENST00000555880 PDZRN3Q9UPQ7 1066 aa8.89□□□□□ -0.99
TDP1-213ENST00000555880 COLQQ9Y215 455 aaPredicted RBP8.89□□□□□ -0.99
TDP1-213ENST00000555880 AGLP35573 1532 aa8.89□□□□□ -0.99
TDP1-213ENST00000555880 ALKQ9UM73 1620 aa8.88□□□□□ -0.99
TDP1-213ENST00000555880 FYB1O15117 783 aa8.88□□□□□ -0.99
TDP1-213ENST00000555880 IPO8O15397 1037 aaKnown RBP8.88□□□□□ -0.99
TDP1-213ENST00000555880 EXOSC9Q06265 439 aaKnown RBP8.88□□□□□ -0.99
TDP1-213ENST00000555880 PLEKHF1Q96S99 279 aa8.88□□□□□ -0.99
TDP1-213ENST00000555880 PCDHB8Q9UN66 801 aa8.88□□□□□ -0.99
TDP1-213ENST00000555880 KIF16BQ96L93 1317 aa8.88□□□□□ -0.99
TDP1-213ENST00000555880 REREQ9P2R6 1566 aa8.88□□□□□ -0.99
TDP1-213ENST00000555880 CD163L1Q9NR16 1453 aa8.88□□□□□ -0.99
TDP1-213ENST00000555880 RIPK4P57078 832 aa8.87□□□□□ -0.99
TDP1-213ENST00000555880 ITPRIPQ8IWB1 547 aa8.87□□□□□ -0.99
TDP1-213ENST00000555880 TNNQ9UQP3 1299 aa8.87□□□□□ -0.99
TDP1-213ENST00000555880 USP19O94966 1318 aa8.87□□□□□ -0.99
TDP1-213ENST00000555880 NLRP1Q9C000 1473 aa8.87□□□□□ -0.99
TDP1-213ENST00000555880 CDC42BPGQ6DT37 1551 aa8.87□□□□□ -0.99
TDP1-213ENST00000555880 FBXO31Q5XUX0 539 aaPredicted RBP8.87□□□□□ -0.99
TDP1-213ENST00000555880 ATF7IPQ6VMQ6 1270 aa8.87□□□□□ -0.99
TDP1-213ENST00000555880 CDK19Q9BWU1 502 aa8.87□□□□□ -0.99
TDP1-213ENST00000555880 SEC24BO95487 1268 aa8.86□□□□□ -0.99
TDP1-213ENST00000555880 TRIM27P14373 513 aa8.86□□□□□ -0.99
TDP1-213ENST00000555880 HDAC1Q13547 482 aaPredicted RBP8.86□□□□□ -0.99
TDP1-213ENST00000555880 SSH1Q8WYL5 1049 aa8.86□□□□□ -0.99
TDP1-213ENST00000555880 ATP7BP35670 1465 aa8.86□□□□□ -0.99
TDP1-213ENST00000555880 ARHGEF40Q8TER5 1519 aa8.86□□□□□ -0.99
TDP1-213ENST00000555880 DLC1Q96QB1 1528 aa8.86□□□□□ -0.99
TDP1-213ENST00000555880 FRAT2O75474 233 aaPredicted RBP8.85□□□□□ -0.99
TDP1-213ENST00000555880 FCHSD2O94868 740 aa8.85□□□□□ -0.99
TDP1-213ENST00000555880 CALD1Q05682 793 aaKnown RBP8.85□□□□□ -0.99
TDP1-213ENST00000555880 TBC1D32Q96NH3 1257 aa8.85□□□□□ -0.99
TDP1-213ENST00000555880 CABP1Q9NZU7 370 aa8.85□□□□□ -0.99
TDP1-213ENST00000555880 PNPLA6Q8IY17 1366 aa8.85□□□□□ -0.99
TDP1-213ENST00000555880 LRRC7Q96NW7 1537 aa8.85□□□□□ -0.99
TDP1-213ENST00000555880 ALDH1L2Q3SY69 923 aa8.85□□□□□ -0.99
TDP1-213ENST00000555880 ZNF428Q96B54 188 aa8.85□□□□□ -0.99
TDP1-213ENST00000555880 CHMP4BQ9H444 224 aaKnown RBP8.85□□□□□ -0.99
TDP1-213ENST00000555880 HDGFP51858 240 aaKnown RBP8.84□□□□□ -0.99
TDP1-213ENST00000555880 NOB1Q9ULX3 412 aaKnown RBP8.84□□□□□ -0.99
TDP1-213ENST00000555880 MAP2P11137 1827 aaKnown RBP8.84□□□□□ -0.99
TDP1-213ENST00000555880 SUGP2Q8IX01 1082 aaKnown RBP eCLIP8.83□□□□□ -1
TDP1-213ENST00000555880 SPOCK2Q92563 424 aa8.83□□□□□ -1
TDP1-213ENST00000555880 KIF13AQ9H1H9 1805 aa8.83□□□□□ -1
TDP1-213ENST00000555880 FAM135BQ49AJ0 1406 aa8.83□□□□□ -1
TDP1-213ENST00000555880 PRKAR2BP31323 418 aa8.83□□□□□ -1
TDP1-213ENST00000555880 IER5LQ5T953 404 aa8.83□□□□□ -1
TDP1-213ENST00000555880 RIMS2Q9UQ26 1411 aa8.82□□□□□ -1
TDP1-213ENST00000555880 TMEM57Q8N5G2 664 aa8.82□□□□□ -1
TDP1-213ENST00000555880 ABCF1Q8NE71 845 aaKnown RBP eCLIP8.82□□□□□ -1
TDP1-213ENST00000555880 SLKQ9H2G2 1235 aaPredicted RBP8.82□□□□□ -1
TDP1-213ENST00000555880 A2ML1A8K2U0 1454 aa8.82□□□□□ -1
TDP1-213ENST00000555880 EDC4Q6P2E9 1401 aaKnown RBP8.82□□□□□ -1
TDP1-213ENST00000555880 PPIP5K1Q6PFW1 1433 aa8.82□□□□□ -1
TDP1-213ENST00000555880 SPATA31D1Q6ZQQ2 1576 aa8.81□□□□□ -1
TDP1-213ENST00000555880 NFE2L2Q16236 605 aa8.81□□□□□ -1
TDP1-213ENST00000555880 SMC5Q8IY18 1101 aa8.81□□□□□ -1
TDP1-213ENST00000555880 RSPH6AQ9H0K4 717 aa8.81□□□□□ -1
TDP1-213ENST00000555880 ZBTB40Q9NUA8 1239 aa8.81□□□□□ -1
TDP1-213ENST00000555880 SETD1AO15047 1707 aaKnown RBP8.81□□□□□ -1
TDP1-213ENST00000555880 GNAI1P63096 354 aa8.81□□□□□ -1
TDP1-213ENST00000555880 LMOD3Q0VAK6 560 aa8.81□□□□□ -1
TDP1-213ENST00000555880 MAMSTRQ6ZN01 415 aa8.81□□□□□ -1
TDP1-213ENST00000555880 IL27Q8NEV9 243 aa8.81□□□□□ -1
TDP1-213ENST00000555880 C22orf23Q9BZE7 217 aa8.81□□□□□ -1
TDP1-213ENST00000555880 POLKQ9UBT6 870 aa8.81□□□□□ -1
TDP1-213ENST00000555880 CDK12Q9NYV4 1490 aaPredicted RBP8.81□□□□□ -1
TDP1-213ENST00000555880 MFAP1P55081 439 aaKnown RBP8.8□□□□□ -1
TDP1-213ENST00000555880 BRPF1P55201 1214 aaPredicted RBP8.8□□□□□ -1
TDP1-213ENST00000555880 TBC1D2Q9BYX2 928 aa8.8□□□□□ -1
TDP1-213ENST00000555880 SCUBE2Q9NQ36 999 aa8.8□□□□□ -1
TDP1-213ENST00000555880 CIZ1Q9ULV3 898 aaPredicted RBP8.8□□□□□ -1
TDP1-213ENST00000555880 ITSN1Q15811 1721 aa8.8□□□□□ -1
TDP1-213ENST00000555880 WAPLQ7Z5K2 1190 aa8.79□□□□□ -1
TDP1-213ENST00000555880 IFT57Q9NWB7 429 aa8.79□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 87.2 ms