RNA–Protein interactions for RNA: ENST00000554976.5

TDP1-210, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 2

Gene TDP1, Length 3,040 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-210ENST00000554976 KDRP35968 1356 aa11.71□□□□□ -0.53
TDP1-210ENST00000554976 RRP7AQ9Y3A4 280 aaKnown RBP11.71□□□□□ -0.54
TDP1-210ENST00000554976 PXDNQ92626 1479 aa11.71□□□□□ -0.54
TDP1-210ENST00000554976 NCAPD2Q15021 1401 aa11.71□□□□□ -0.54
TDP1-210ENST00000554976 RTL1A6NKG5 1358 aa11.71□□□□□ -0.54
TDP1-210ENST00000554976 EIF4A2Q14240 407 aaKnown RBP11.7□□□□□ -0.54
TDP1-210ENST00000554976 FLT4P35916 1363 aa11.7□□□□□ -0.54
TDP1-210ENST00000554976 IL16Q14005 1332 aa11.7□□□□□ -0.54
TDP1-210ENST00000554976 MAP3K19Q56UN5 1328 aa11.7□□□□□ -0.54
TDP1-210ENST00000554976 NHSL1Q5SYE7 1610 aa11.7□□□□□ -0.54
TDP1-210ENST00000554976 TMEM94Q12767 1356 aa11.7□□□□□ -0.54
TDP1-210ENST00000554976 NGDNQ8NEJ9 315 aaKnown RBP11.69□□□□□ -0.54
TDP1-210ENST00000554976 U2SURPO15042 1029 aaKnown RBP11.69□□□□□ -0.54
TDP1-210ENST00000554976 PHACTR3Q96KR7 559 aa11.69□□□□□ -0.54
TDP1-210ENST00000554976 USP19O94966 1318 aa11.68□□□□□ -0.54
TDP1-210ENST00000554976 FAM208AQ9UK61 1670 aaKnown RBP11.68□□□□□ -0.54
TDP1-210ENST00000554976 ABCC6O95255 1503 aa11.68□□□□□ -0.54
TDP1-210ENST00000554976 PRKAR2BP31323 418 aa11.68□□□□□ -0.54
TDP1-210ENST00000554976 HSPA2P54652 639 aa11.68□□□□□ -0.54
TDP1-210ENST00000554976 ADAMTS7Q9UKP4 1686 aa11.68□□□□□ -0.54
TDP1-210ENST00000554976 PNNQ9H307 717 aaKnown RBP11.67□□□□□ -0.54
TDP1-210ENST00000554976 ORAI2Q96SN7 254 aa11.67□□□□□ -0.54
TDP1-210ENST00000554976 C19orf44Q9H6X5 657 aa11.67□□□□□ -0.54
TDP1-210ENST00000554976 IGSF1Q8N6C5 1336 aa11.66□□□□□ -0.54
TDP1-210ENST00000554976 HSP90AB2PQ58FF8 381 aa11.66□□□□□ -0.54
TDP1-210ENST00000554976 NFE2L2Q16236 605 aa11.65□□□□□ -0.54
TDP1-210ENST00000554976 PROSER2Q86WR7 435 aaPredicted RBP11.65□□□□□ -0.54
TDP1-210ENST00000554976 SIPA1L3O60292 1781 aaPredicted RBP11.65□□□□□ -0.54
TDP1-210ENST00000554976 FANCIQ9NVI1 1328 aa11.65□□□□□ -0.54
TDP1-210ENST00000554976 C20orf194Q5TEA3 1177 aa11.65□□□□□ -0.55
TDP1-210ENST00000554976 PPM1GO15355 546 aaPredicted RBP11.64□□□□□ -0.55
TDP1-210ENST00000554976 PLIN1O60240 522 aa11.64□□□□□ -0.55
TDP1-210ENST00000554976 HMOX1P09601 288 aa11.64□□□□□ -0.55
TDP1-210ENST00000554976 ZNF853P0CG23 659 aa11.64□□□□□ -0.55
TDP1-210ENST00000554976 HOXC9P31274 260 aa11.64□□□□□ -0.55
TDP1-210ENST00000554976 EXOC6Q8TAG9 804 aa11.64□□□□□ -0.55
TDP1-210ENST00000554976 MAPK8IP3Q9UPT6 1336 aa11.64□□□□□ -0.55
TDP1-210ENST00000554976 KDM3BQ7LBC6 1761 aa11.64□□□□□ -0.55
TDP1-210ENST00000554976 ESCO1Q5FWF5 840 aa11.64□□□□□ -0.55
TDP1-210ENST00000554976 AEBP1Q8IUX7 1158 aa11.64□□□□□ -0.55
TDP1-210ENST00000554976 RIPK4P57078 832 aa11.63□□□□□ -0.55
TDP1-210ENST00000554976 NEUROD2Q15784 382 aa11.63□□□□□ -0.55
TDP1-210ENST00000554976 RARSP54136 660 aaKnown RBP11.62□□□□□ -0.55
TDP1-210ENST00000554976 NLRP6P59044 892 aa11.62□□□□□ -0.55
TDP1-210ENST00000554976 CRB1P82279 1406 aa11.62□□□□□ -0.55
TDP1-210ENST00000554976 BCAR3O75815 825 aa11.62□□□□□ -0.55
TDP1-210ENST00000554976 ABTB2Q8N961 1025 aa11.62□□□□□ -0.55
TDP1-210ENST00000554976 N4BP2Q86UW6 1770 aaPredicted RBP11.62□□□□□ -0.55
TDP1-210ENST00000554976 CT47B1P0C2W7 299 aaPredicted RBP11.62□□□□□ -0.55
TDP1-210ENST00000554976 MYH16Q9H6N6 1097 aa11.62□□□□□ -0.55
TDP1-210ENST00000554976 B4GALNT3Q6L9W6 998 aa11.61□□□□□ -0.55
TDP1-210ENST00000554976 PKD1L3Q7Z443 1732 aa11.61□□□□□ -0.55
TDP1-210ENST00000554976 CRBNQ96SW2 442 aa11.61□□□□□ -0.55
TDP1-210ENST00000554976 LTBP4Q8N2S1 1624 aa11.6□□□□□ -0.55
TDP1-210ENST00000554976 TNS3Q68CZ2 1445 aa11.6□□□□□ -0.55
TDP1-210ENST00000554976 MSH6P52701 1360 aa11.6□□□□□ -0.55
TDP1-210ENST00000554976 EYA1Q99502 592 aa11.6□□□□□ -0.55
TDP1-210ENST00000554976 NUTM2GQ5VZR2 741 aa11.6□□□□□ -0.55
TDP1-210ENST00000554976 TSR2Q969E8 191 aaKnown RBP11.6□□□□□ -0.55
TDP1-210ENST00000554976 SULT6B1Q6IMI4 303 aa11.59□□□□□ -0.55
TDP1-210ENST00000554976 IP6K1Q92551 441 aa11.59□□□□□ -0.55
TDP1-210ENST00000554976 PSME1Q06323 249 aa11.59□□□□□ -0.55
TDP1-210ENST00000554976 IFT57Q9NWB7 429 aa11.58□□□□□ -0.56
TDP1-210ENST00000554976 ZNF335Q9H4Z2 1342 aaPredicted RBP11.58□□□□□ -0.56
TDP1-210ENST00000554976 FOXO3O43524 673 aa11.58□□□□□ -0.56
TDP1-210ENST00000554976 TSHZ2Q9NRE2 1034 aa11.58□□□□□ -0.56
TDP1-210ENST00000554976 COL22A1Q8NFW1 1626 aaPredicted RBP11.58□□□□□ -0.56
TDP1-210ENST00000554976 SHANK3Q9BYB0 1731 aa11.58□□□□□ -0.56
TDP1-210ENST00000554976 KDM2BQ8NHM5 1336 aa11.58□□□□□ -0.56
TDP1-210ENST00000554976 BRPF1P55201 1214 aaPredicted RBP11.57□□□□□ -0.56
TDP1-210ENST00000554976 KRT28Q7Z3Y7 464 aa11.57□□□□□ -0.56
TDP1-210ENST00000554976 ARHGEF25Q86VW2 580 aa11.57□□□□□ -0.56
TDP1-210ENST00000554976 KCNH5Q8NCM2 988 aa11.57□□□□□ -0.56
TDP1-210ENST00000554976 EXOSC9Q06265 439 aaKnown RBP11.57□□□□□ -0.56
TDP1-210ENST00000554976 PDE3AQ14432 1141 aa11.57□□□□□ -0.56
TDP1-210ENST00000554976 SCN11AQ9UI33 1791 aa11.57□□□□□ -0.56
TDP1-210ENST00000554976 PARP4Q9UKK3 1724 aaKnown RBP11.56□□□□□ -0.56
TDP1-210ENST00000554976 PAK3O75914 559 aaPredicted RBP11.56□□□□□ -0.56
TDP1-210ENST00000554976 C14orf37Q86TY3 774 aa11.56□□□□□ -0.56
TDP1-210ENST00000554976 CADPS2Q86UW7 1296 aa11.56□□□□□ -0.56
TDP1-210ENST00000554976 FAM83GA6ND36 823 aa11.56□□□□□ -0.56
TDP1-210ENST00000554976 THUMPD2Q9BTF0 503 aaKnown RBP11.56□□□□□ -0.56
TDP1-210ENST00000554976 AMPHP49418 695 aa11.55□□□□□ -0.56
TDP1-210ENST00000554976 CFAP44Q96MT7 982 aa11.55□□□□□ -0.56
TDP1-210ENST00000554976 SOX12O15370 315 aa11.55□□□□□ -0.56
TDP1-210ENST00000554976 GCP02774 474 aa11.55□□□□□ -0.56
TDP1-210ENST00000554976 XPCQ01831 940 aaPredicted RBP11.55□□□□□ -0.56
TDP1-210ENST00000554976 LMOD3Q0VAK6 560 aa11.55□□□□□ -0.56
TDP1-210ENST00000554976 MTHFSDQ2M296 383 aaKnown RBP11.55□□□□□ -0.56
TDP1-210ENST00000554976 MBIPQ9NS73 344 aa11.55□□□□□ -0.56
TDP1-210ENST00000554976 AHDC1Q5TGY3 1603 aaPredicted RBP11.55□□□□□ -0.56
TDP1-210ENST00000554976 ROBO1Q9Y6N7 1651 aa11.55□□□□□ -0.56
TDP1-210ENST00000554976 ATF3P18847 181 aa11.54□□□□□ -0.56
TDP1-210ENST00000554976 BRINP3Q76B58 766 aa11.54□□□□□ -0.56
TDP1-210ENST00000554976 GOLGA6L2Q8N9W4 650 aaPredicted RBP11.54□□□□□ -0.56
TDP1-210ENST00000554976 SPATA31A3Q5VYP0 1347 aa11.54□□□□□ -0.56
TDP1-210ENST00000554976 CPDO75976 1380 aa11.54□□□□□ -0.56
TDP1-210ENST00000554976 WNK3Q9BYP7 1800 aa11.54□□□□□ -0.56
TDP1-210ENST00000554976 TNNQ9UQP3 1299 aa11.54□□□□□ -0.56
TDP1-210ENST00000554976 CALD1Q05682 793 aaKnown RBP11.53□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms