RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-215ENST00000552823 MYOM1P52179 1685 aa7.04□□□□□ -1.28
LIMA1-215ENST00000552823 RIMBP3CA6NJZ7 1639 aa7.04□□□□□ -1.28
LIMA1-215ENST00000552823 RIMBP3BA6NNM3 1639 aa7.04□□□□□ -1.28
LIMA1-215ENST00000552823 RIMBP3Q9UFD9 1639 aa7.04□□□□□ -1.28
LIMA1-215ENST00000552823 MAP3K19Q56UN5 1328 aa7.04□□□□□ -1.28
LIMA1-215ENST00000552823 HSP90AA1P07900 732 aaKnown RBP7.04□□□□□ -1.28
LIMA1-215ENST00000552823 ZC3H6P61129 1189 aaKnown RBP7.04□□□□□ -1.28
LIMA1-215ENST00000552823 MTHFSDQ2M296 383 aaKnown RBP7.04□□□□□ -1.28
LIMA1-215ENST00000552823 THEMISQ8N1K5 641 aaPredicted RBP7.04□□□□□ -1.28
LIMA1-215ENST00000552823 NGEFQ8N5V2 710 aa7.04□□□□□ -1.28
LIMA1-215ENST00000552823 LRRC59Q96AG4 307 aaKnown RBP7.04□□□□□ -1.28
LIMA1-215ENST00000552823 LAMC1P11047 1609 aa7.04□□□□□ -1.28
LIMA1-215ENST00000552823 LMTK2Q8IWU2 1503 aa7.04□□□□□ -1.28
LIMA1-215ENST00000552823 NRXN1Q9ULB1 1477 aa7.04□□□□□ -1.28
LIMA1-215ENST00000552823 ZNF692Q9BU19 519 aaPredicted RBP7.03□□□□□ -1.28
LIMA1-215ENST00000552823 CCDC27Q2M243 656 aa7.03□□□□□ -1.28
LIMA1-215ENST00000552823 NOL8Q76FK4 1167 aaKnown RBP7.03□□□□□ -1.28
LIMA1-215ENST00000552823 OTUD7AQ8TE49 926 aaPredicted RBP7.03□□□□□ -1.28
LIMA1-215ENST00000552823 EYA1Q99502 592 aa7.03□□□□□ -1.28
LIMA1-215ENST00000552823 PTPRMP28827 1452 aa7.03□□□□□ -1.28
LIMA1-215ENST00000552823 ALKQ9UM73 1620 aa7.03□□□□□ -1.28
LIMA1-215ENST00000552823 MRPL50Q8N5N7 158 aaKnown RBP7.03□□□□□ -1.28
LIMA1-215ENST00000552823 TMEM2Q9UHN6 1383 aa7.03□□□□□ -1.28
LIMA1-215ENST00000552823 A0A0G2JS52 829 aa7.02□□□□□ -1.29
LIMA1-215ENST00000552823 ORAI2Q96SN7 254 aa7.02□□□□□ -1.29
LIMA1-215ENST00000552823 FKBP5Q13451 457 aaPredicted RBP7.02□□□□□ -1.29
LIMA1-215ENST00000552823 RBM42Q9BTD8 480 aaKnown RBP7.02□□□□□ -1.29
LIMA1-215ENST00000552823 NSD2O96028 1365 aa7.02□□□□□ -1.29
LIMA1-215ENST00000552823 KIF16BQ96L93 1317 aa7.02□□□□□ -1.29
LIMA1-215ENST00000552823 ARHGAP31Q2M1Z3 1444 aa7.02□□□□□ -1.29
LIMA1-215ENST00000552823 FOXD4L5Q5VV16 416 aaPredicted RBP7.02□□□□□ -1.29
LIMA1-215ENST00000552823 FOXD4L4Q8WXT5 416 aaPredicted RBP7.02□□□□□ -1.29
LIMA1-215ENST00000552823 MEIS3Q99687 375 aa7.02□□□□□ -1.29
LIMA1-215ENST00000552823 BECN1Q14457 450 aa7.01□□□□□ -1.29
LIMA1-215ENST00000552823 CABLES1Q8TDN4 633 aa7.01□□□□□ -1.29
LIMA1-215ENST00000552823 CFAP44Q96MT7 982 aa7.01□□□□□ -1.29
LIMA1-215ENST00000552823 PUS7Q96PZ0 661 aaKnown RBP7.01□□□□□ -1.29
LIMA1-215ENST00000552823 C22orf23Q9BZE7 217 aa7.01□□□□□ -1.29
LIMA1-215ENST00000552823 ZBTB40Q9NUA8 1239 aa7.01□□□□□ -1.29
LIMA1-215ENST00000552823 PPLO60437 1756 aa7.01□□□□□ -1.29
LIMA1-215ENST00000552823 DTNBO60941 627 aa7.01□□□□□ -1.29
LIMA1-215ENST00000552823 MPRIPQ6WCQ1 1025 aa7.01□□□□□ -1.29
LIMA1-215ENST00000552823 EXOC6BQ9Y2D4 811 aa7.01□□□□□ -1.29
LIMA1-215ENST00000552823 CD163L1Q9NR16 1453 aa7.01□□□□□ -1.29
LIMA1-215ENST00000552823 CLTCQ00610 1675 aaKnown RBP7.01□□□□□ -1.29
LIMA1-215ENST00000552823 PIP4K2AP48426 406 aaPredicted RBP7□□□□□ -1.29
LIMA1-215ENST00000552823 CHD1LQ86WJ1 897 aa7□□□□□ -1.29
LIMA1-215ENST00000552823 CCDC9Q9Y3X0 531 aaKnown RBP7□□□□□ -1.29
LIMA1-215ENST00000552823 CPS1P31327 1500 aa7□□□□□ -1.29
LIMA1-215ENST00000552823 MAP4K4O95819 1239 aaPredicted RBP7□□□□□ -1.29
LIMA1-215ENST00000552823 HSPA2P54652 639 aa7□□□□□ -1.29
LIMA1-215ENST00000552823 CALD1Q05682 793 aaKnown RBP7□□□□□ -1.29
LIMA1-215ENST00000552823 AIMP1Q12904 312 aaKnown RBP7□□□□□ -1.29
LIMA1-215ENST00000552823 IL27Q8NEV9 243 aa7□□□□□ -1.29
LIMA1-215ENST00000552823 ZBTB7BO15156 539 aaPredicted RBP7□□□□□ -1.29
LIMA1-215ENST00000552823 KCNQ3O43525 872 aa7□□□□□ -1.29
LIMA1-215ENST00000552823 LMOD3Q0VAK6 560 aa7□□□□□ -1.29
LIMA1-215ENST00000552823 PROSER2Q86WR7 435 aaPredicted RBP7□□□□□ -1.29
LIMA1-215ENST00000552823 JARID2Q92833 1246 aaPredicted RBP7□□□□□ -1.29
LIMA1-215ENST00000552823 IFT57Q9NWB7 429 aa7□□□□□ -1.29
LIMA1-215ENST00000552823 PHF8Q9UPP1 1060 aa7□□□□□ -1.29
LIMA1-215ENST00000552823 ARHGEF40Q8TER5 1519 aa6.99□□□□□ -1.29
LIMA1-215ENST00000552823 USP19O94966 1318 aa6.99□□□□□ -1.29
LIMA1-215ENST00000552823 CSB-PGBD3P0DP91 1061 aa6.99□□□□□ -1.29
LIMA1-215ENST00000552823 SIRT2Q8IXJ6 389 aa6.99□□□□□ -1.29
LIMA1-215ENST00000552823 STK31Q9BXU1 1019 aa6.99□□□□□ -1.29
LIMA1-215ENST00000552823 TBC1D2Q9BYX2 928 aa6.99□□□□□ -1.29
LIMA1-215ENST00000552823 LGR6Q9HBX8 967 aa6.99□□□□□ -1.29
LIMA1-215ENST00000552823 CFAP74Q9C0B2 1584 aa6.99□□□□□ -1.29
LIMA1-215ENST00000552823 FOXD4L6Q3SYB3 417 aaPredicted RBP6.99□□□□□ -1.29
LIMA1-215ENST00000552823 FOXD4L3Q6VB84 417 aaPredicted RBP6.99□□□□□ -1.29
LIMA1-215ENST00000552823 ANKLE2Q86XL3 938 aa6.99□□□□□ -1.29
LIMA1-215ENST00000552823 IL1RAPL2Q9NP60 686 aa6.99□□□□□ -1.29
LIMA1-215ENST00000552823 CHRNA2Q15822 529 aa6.98□□□□□ -1.29
LIMA1-215ENST00000552823 API5Q9BZZ5 524 aaKnown RBP6.98□□□□□ -1.29
LIMA1-215ENST00000552823 BRPF3Q9ULD4 1205 aa6.98□□□□□ -1.29
LIMA1-215ENST00000552823 RICTORQ6R327 1708 aa6.98□□□□□ -1.29
LIMA1-215ENST00000552823 HSP90AB1P08238 724 aaKnown RBP6.98□□□□□ -1.29
LIMA1-215ENST00000552823 RILPL2Q969X0 211 aa6.98□□□□□ -1.29
LIMA1-215ENST00000552823 PHAXQ9H814 394 aaKnown RBP6.98□□□□□ -1.29
LIMA1-215ENST00000552823 ZNF330Q9Y3S2 320 aaPredicted RBP6.98□□□□□ -1.29
LIMA1-215ENST00000552823 SETBP1Q9Y6X0 1596 aa6.98□□□□□ -1.29
LIMA1-215ENST00000552823 TMEM131LA2VDJ0 1609 aa6.98□□□□□ -1.29
LIMA1-215ENST00000552823 TRIM6-TRIM34B2RNG4 842 aa6.98□□□□□ -1.29
LIMA1-215ENST00000552823 USP35Q9P2H5 1018 aa6.98□□□□□ -1.29
LIMA1-215ENST00000552823 PREX1Q8TCU6 1659 aa6.98□□□□□ -1.29
LIMA1-215ENST00000552823 DIP2BQ9P265 1576 aa6.97□□□□□ -1.29
LIMA1-215ENST00000552823 ZFYVE9O95405 1425 aa6.97□□□□□ -1.29
LIMA1-215ENST00000552823 NLRP2Q9NX02 1062 aa6.97□□□□□ -1.29
LIMA1-215ENST00000552823 NINLQ9Y2I6 1382 aa6.97□□□□□ -1.29
LIMA1-215ENST00000552823 EDC4Q6P2E9 1401 aaKnown RBP6.97□□□□□ -1.29
LIMA1-215ENST00000552823 ARHGEF28Q8N1W1 1705 aaKnown RBP6.97□□□□□ -1.29
LIMA1-215ENST00000552823 ALDH1L2Q3SY69 923 aa6.97□□□□□ -1.29
LIMA1-215ENST00000552823 PTPRUQ92729 1446 aa6.97□□□□□ -1.29
LIMA1-215ENST00000552823 HAP1P54257 671 aaPredicted RBP6.96□□□□□ -1.29
LIMA1-215ENST00000552823 TEFQ10587 303 aa6.96□□□□□ -1.29
LIMA1-215ENST00000552823 SLC39A6Q13433 755 aa6.96□□□□□ -1.29
LIMA1-215ENST00000552823 NBPF6Q5VWK0 638 aa6.96□□□□□ -1.29
LIMA1-215ENST00000552823 ZNF530Q6P9A1 599 aaPredicted RBP6.96□□□□□ -1.29
LIMA1-215ENST00000552823 HSCBQ8IWL3 235 aa6.96□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms