RNA–Protein interactions for RNA: ENST00000548259.1

VPS29-204, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-204ENST00000548259 EVC2Q86UK5 1308 aa24.37■■□□□ 1.49
VPS29-204ENST00000548259 BCL9O00512 1426 aa24.37■■□□□ 1.49
VPS29-204ENST00000548259 ZNF692Q9BU19 519 aaPredicted RBP24.37■■□□□ 1.49
VPS29-204ENST00000548259 SLIT3O75094 1523 aa24.36■■□□□ 1.49
VPS29-204ENST00000548259 EXOC5O00471 708 aa24.36■■□□□ 1.49
VPS29-204ENST00000548259 ZBTB7AO95365 584 aa24.36■■□□□ 1.49
VPS29-204ENST00000548259 MARCH10Q8NA82 808 aaPredicted RBP24.36■■□□□ 1.49
VPS29-204ENST00000548259 CARD10Q9BWT7 1032 aa24.36■■□□□ 1.49
VPS29-204ENST00000548259 PEAK1Q9H792 1746 aa24.35■■□□□ 1.49
VPS29-204ENST00000548259 LRRC37A3O60309 1634 aa24.34■■□□□ 1.49
VPS29-204ENST00000548259 CPSF1Q10570 1443 aaKnown RBP24.34■■□□□ 1.49
VPS29-204ENST00000548259 ARHGEF25Q86VW2 580 aa24.33■■□□□ 1.49
VPS29-204ENST00000548259 AXIN2Q9Y2T1 843 aa24.33■■□□□ 1.49
VPS29-204ENST00000548259 TXNRD1Q16881 649 aa24.32■■□□□ 1.48
VPS29-204ENST00000548259 PROM2Q8N271 834 aa24.32■■□□□ 1.48
VPS29-204ENST00000548259 ATF5Q9Y2D1 282 aaPredicted RBP24.31■■□□□ 1.48
VPS29-204ENST00000548259 TTC21AQ8NDW8 1320 aa24.31■■□□□ 1.48
VPS29-204ENST00000548259 CCDC7Q96M83 1385 aa24.3■■□□□ 1.48
VPS29-204ENST00000548259 SOX12O15370 315 aa24.3■■□□□ 1.48
VPS29-204ENST00000548259 SLC15A2Q16348 729 aa24.3■■□□□ 1.48
VPS29-204ENST00000548259 PTF1AQ7RTS3 328 aa24.3■■□□□ 1.48
VPS29-204ENST00000548259 MTFR1LQ9H019 292 aa24.29■■□□□ 1.48
VPS29-204ENST00000548259 TTC21BQ7Z4L5 1316 aa24.29■■□□□ 1.48
VPS29-204ENST00000548259 PTGER2P43116 358 aa24.28■■□□□ 1.48
VPS29-204ENST00000548259 PDGFDQ9GZP0 370 aaPredicted RBP24.28■■□□□ 1.48
VPS29-204ENST00000548259 QRICH2Q9H0J4 1663 aa24.26■■□□□ 1.47
VPS29-204ENST00000548259 CASZ1Q86V15 1759 aa24.25■■□□□ 1.47
VPS29-204ENST00000548259 SYT17Q9BSW7 474 aa24.25■■□□□ 1.47
VPS29-204ENST00000548259 FHDC1Q9C0D6 1143 aaPredicted RBP24.25■■□□□ 1.47
VPS29-204ENST00000548259 SBF2Q86WG5 1849 aa24.25■■□□□ 1.47
VPS29-204ENST00000548259 ZNF784Q8NCA9 323 aaPredicted RBP24.24■■□□□ 1.47
VPS29-204ENST00000548259 PIK3C2AO00443 1686 aa24.23■■□□□ 1.47
VPS29-204ENST00000548259 COL18A1P39060 1754 aa24.22■■□□□ 1.47
VPS29-204ENST00000548259 TNS2Q63HR2 1409 aa24.22■■□□□ 1.47
VPS29-204ENST00000548259 KTN1Q86UP2 1357 aaKnown RBP24.21■■□□□ 1.47
VPS29-204ENST00000548259 AKAP12Q02952 1782 aa24.21■■□□□ 1.47
VPS29-204ENST00000548259 ARXQ96QS3 562 aa24.19■■□□□ 1.46
VPS29-204ENST00000548259 NLRP2Q9NX02 1062 aa24.19■■□□□ 1.46
VPS29-204ENST00000548259 TRPM1Q7Z4N2 1603 aa24.19■■□□□ 1.46
VPS29-204ENST00000548259 ABCC6O95255 1503 aa24.19■■□□□ 1.46
VPS29-204ENST00000548259 L3MBTL2Q969R5 705 aa24.18■■□□□ 1.46
VPS29-204ENST00000548259 MYOM1P52179 1685 aa24.18■■□□□ 1.46
VPS29-204ENST00000548259 ROCK2O75116 1388 aaKnown RBP24.17■■□□□ 1.46
VPS29-204ENST00000548259 WNK3Q9BYP7 1800 aa24.17■■□□□ 1.46
VPS29-204ENST00000548259 IL2RBP14784 551 aa24.17■■□□□ 1.46
VPS29-204ENST00000548259 ACSBG1Q96GR2 724 aa24.17■■□□□ 1.46
VPS29-204ENST00000548259 ERBB3P21860 1342 aa24.14■■□□□ 1.46
VPS29-204ENST00000548259 SGIP1Q9BQI5 828 aa24.14■■□□□ 1.45
VPS29-204ENST00000548259 NFAT5O94916 1531 aa24.14■■□□□ 1.45
VPS29-204ENST00000548259 SUGP2Q8IX01 1082 aaKnown RBP eCLIP24.13■■□□□ 1.45
VPS29-204ENST00000548259 MAP3K5Q99683 1374 aa24.13■■□□□ 1.45
VPS29-204ENST00000548259 SENP3-EIF4A1A0A087X0R7 540 aa24.11■■□□□ 1.45
VPS29-204ENST00000548259 GPR162Q16538 588 aa24.11■■□□□ 1.45
VPS29-204ENST00000548259 SLC16A10Q8TF71 515 aa24.11■■□□□ 1.45
VPS29-204ENST00000548259 USP31Q70CQ4 1352 aa24.11■■□□□ 1.45
VPS29-204ENST00000548259 POLD1P28340 1107 aa24.1■■□□□ 1.45
VPS29-204ENST00000548259 HDGFL2Q7Z4V5 671 aaPredicted RBP24.1■■□□□ 1.45
VPS29-204ENST00000548259 NHSQ6T4R5 1651 aa24.09■■□□□ 1.45
VPS29-204ENST00000548259 C1QTNF8P60827 252 aa24.09■■□□□ 1.45
VPS29-204ENST00000548259 SLC27A3Q5K4L6 730 aa24.09■■□□□ 1.45
VPS29-204ENST00000548259 ANKRD24Q8TF21 1146 aa24.09■■□□□ 1.45
VPS29-204ENST00000548259 UTRNP46939 3433 aa24.08■■□□□ 1.45
VPS29-204ENST00000548259 RGPD5Q99666 1765 aa24.06■■□□□ 1.44
VPS29-204ENST00000548259 TMC1Q8TDI8 760 aa24.06■■□□□ 1.44
VPS29-204ENST00000548259 NME9Q86XW9 330 aa24.05■■□□□ 1.44
VPS29-204ENST00000548259 KLHL34Q8N239 644 aa24.05■■□□□ 1.44
VPS29-204ENST00000548259 SBNO2Q9Y2G9 1366 aa24.04■■□□□ 1.44
VPS29-204ENST00000548259 ZNF827Q17R98 1081 aa24.04■■□□□ 1.44
VPS29-204ENST00000548259 TERF2IPQ9NYB0 399 aa24.04■■□□□ 1.44
VPS29-204ENST00000548259 NEUROD1Q13562 356 aa24.02■■□□□ 1.44
VPS29-204ENST00000548259 DDX54Q8TDD1 881 aaKnown RBP24.02■■□□□ 1.44
VPS29-204ENST00000548259 LRRC4BQ9NT99 713 aa24.02■■□□□ 1.44
VPS29-204ENST00000548259 TFCP2L1Q9NZI6 479 aa24.02■■□□□ 1.44
VPS29-204ENST00000548259 PELP1Q8IZL8 1130 aaKnown RBP24.01■■□□□ 1.43
VPS29-204ENST00000548259 AKT1S1Q96B36 256 aa24.01■■□□□ 1.43
VPS29-204ENST00000548259 GIGYF1O75420 1035 aaPredicted RBP24■■□□□ 1.43
VPS29-204ENST00000548259 EDC4Q6P2E9 1401 aaKnown RBP24■■□□□ 1.43
VPS29-204ENST00000548259 PAPPAQ13219 1627 aa23.99■■□□□ 1.43
VPS29-204ENST00000548259 SYTL4Q96C24 671 aaPredicted RBP23.99■■□□□ 1.43
VPS29-204ENST00000548259 SIN3AQ96ST3 1273 aa23.99■■□□□ 1.43
VPS29-204ENST00000548259 CHD4Q14839 1912 aa23.98■■□□□ 1.43
VPS29-204ENST00000548259 IP6K1Q92551 441 aa23.98■■□□□ 1.43
VPS29-204ENST00000548259 CARD11Q9BXL7 1154 aa23.98■■□□□ 1.43
VPS29-204ENST00000548259 MON2Q7Z3U7 1717 aa23.98■■□□□ 1.43
VPS29-204ENST00000548259 HMGB2P26583 209 aaKnown RBP23.97■■□□□ 1.43
VPS29-204ENST00000548259 SLC12A5Q9H2X9 1139 aa23.96■■□□□ 1.43
VPS29-204ENST00000548259 BTAF1O14981 1849 aa23.96■■□□□ 1.43
VPS29-204ENST00000548259 LTV1Q96GA3 475 aaPredicted RBP23.95■■□□□ 1.42
VPS29-204ENST00000548259 PNPLA7Q6ZV29 1317 aa23.94■■□□□ 1.42
VPS29-204ENST00000548259 GRIN3BO60391 1043 aa23.94■■□□□ 1.42
VPS29-204ENST00000548259 PUS7Q96PZ0 661 aaKnown RBP23.94■■□□□ 1.42
VPS29-204ENST00000548259 USP54Q70EL1 1684 aa23.94■■□□□ 1.42
VPS29-204ENST00000548259 ANKRD36BQ8N2N9 1353 aa23.93■■□□□ 1.42
VPS29-204ENST00000548259 PRIM1P49642 420 aaKnown RBP23.93■■□□□ 1.42
VPS29-204ENST00000548259 CD163L1Q9NR16 1453 aa23.93■■□□□ 1.42
VPS29-204ENST00000548259 MSH5O43196 834 aa23.91■■□□□ 1.42
VPS29-204ENST00000548259 AMPHP49418 695 aa23.91■■□□□ 1.42
VPS29-204ENST00000548259 COG3Q96JB2 828 aa23.91■■□□□ 1.42
VPS29-204ENST00000548259 KAT6BQ8WYB5 2073 aa23.91■■□□□ 1.42
VPS29-204ENST00000548259 ZCRB1Q8TBF4 217 aaKnown RBP23.9■■□□□ 1.42
Retrieved 100 of 20,778 RNA–protein pairs in 68.6 ms