RNA–Protein interactions for RNA: ENST00000545042.1

DDX55-213, Transcript of DEAD-box helicase 55, humanhuman

TSL 5

Gene DDX55, Length 450 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-213ENST00000545042 THRAP3Q9Y2W1 955 aaKnown RBP18.38■□□□□ 0.53
DDX55-213ENST00000545042 OVOS2A0A0J9YW53 1432 aa18.38■□□□□ 0.53
DDX55-213ENST00000545042 OVOS2Q6IE36 1432 aa18.38■□□□□ 0.53
DDX55-213ENST00000545042 BRWD3Q6RI45 1802 aa18.37■□□□□ 0.53
DDX55-213ENST00000545042 TOM1L2Q6ZVM7 507 aa18.37■□□□□ 0.53
DDX55-213ENST00000545042 CRB1P82279 1406 aa18.37■□□□□ 0.53
DDX55-213ENST00000545042 ABCC6O95255 1503 aa18.36■□□□□ 0.53
DDX55-213ENST00000545042 CSB-PGBD3P0DP91 1061 aa18.36■□□□□ 0.53
DDX55-213ENST00000545042 COL18A1P39060 1754 aa18.36■□□□□ 0.53
DDX55-213ENST00000545042 CCDC125Q86Z20 511 aa18.36■□□□□ 0.53
DDX55-213ENST00000545042 AXIN2Q9Y2T1 843 aa18.36■□□□□ 0.53
DDX55-213ENST00000545042 EP400Q96L91 3159 aa18.35■□□□□ 0.53
DDX55-213ENST00000545042 WDR17Q8IZU2 1322 aa18.35■□□□□ 0.53
DDX55-213ENST00000545042 MYOM1P52179 1685 aa18.34■□□□□ 0.53
DDX55-213ENST00000545042 THSD7AQ9UPZ6 1657 aa18.34■□□□□ 0.53
DDX55-213ENST00000545042 FYB1O15117 783 aa18.34■□□□□ 0.53
DDX55-213ENST00000545042 GGNBP2Q9H3C7 697 aa18.33■□□□□ 0.52
DDX55-213ENST00000545042 NSD3Q9BZ95 1437 aa18.32■□□□□ 0.52
DDX55-213ENST00000545042 SF3B2Q13435 895 aaKnown RBP18.32■□□□□ 0.52
DDX55-213ENST00000545042 LTN1O94822 1766 aa18.32■□□□□ 0.52
DDX55-213ENST00000545042 PDE3BQ13370 1112 aa18.31■□□□□ 0.52
DDX55-213ENST00000545042 CARD14Q9BXL6 1004 aa18.31■□□□□ 0.52
DDX55-213ENST00000545042 RGPD5Q99666 1765 aa18.3■□□□□ 0.52
DDX55-213ENST00000545042 CARD10Q9BWT7 1032 aa18.3■□□□□ 0.52
DDX55-213ENST00000545042 BLMP54132 1417 aaPredicted RBP18.3■□□□□ 0.52
DDX55-213ENST00000545042 CGNL1Q0VF96 1302 aa18.29■□□□□ 0.52
DDX55-213ENST00000545042 KIF20BQ96Q89 1820 aa18.29■□□□□ 0.52
DDX55-213ENST00000545042 AMPHP49418 695 aa18.29■□□□□ 0.52
DDX55-213ENST00000545042 IP6K1Q92551 441 aa18.29■□□□□ 0.52
DDX55-213ENST00000545042 CDCA7Q9BWT1 371 aaPredicted RBP18.29■□□□□ 0.52
DDX55-213ENST00000545042 ERBB3P21860 1342 aa18.28■□□□□ 0.52
DDX55-213ENST00000545042 ANKRD24Q8TF21 1146 aa18.28■□□□□ 0.52
DDX55-213ENST00000545042 CCDC7Q96M83 1385 aa18.28■□□□□ 0.52
DDX55-213ENST00000545042 MAP3K19Q56UN5 1328 aa18.27■□□□□ 0.52
DDX55-213ENST00000545042 FAM196AQ6ZSG2 479 aa18.27■□□□□ 0.52
DDX55-213ENST00000545042 NLRP2Q9NX02 1062 aa18.27■□□□□ 0.52
DDX55-213ENST00000545042 FAM182BQ5T319 152 aa18.26■□□□□ 0.51
DDX55-213ENST00000545042 PANK3Q9H999 370 aa18.26■□□□□ 0.51
DDX55-213ENST00000545042 C11orf95C9JLR9 678 aaPredicted RBP18.25■□□□□ 0.51
DDX55-213ENST00000545042 HOXC9P31274 260 aa18.25■□□□□ 0.51
DDX55-213ENST00000545042 DDB1Q16531 1140 aa18.25■□□□□ 0.51
DDX55-213ENST00000545042 RTL1A6NKG5 1358 aa18.25■□□□□ 0.51
DDX55-213ENST00000545042 PARP4Q9UKK3 1724 aaKnown RBP18.24■□□□□ 0.51
DDX55-213ENST00000545042 FBLN1P23142 703 aa18.24■□□□□ 0.51
DDX55-213ENST00000545042 RRS1Q15050 365 aaKnown RBP18.24■□□□□ 0.51
DDX55-213ENST00000545042 LTV1Q96GA3 475 aaPredicted RBP18.24■□□□□ 0.51
DDX55-213ENST00000545042 KIF7Q2M1P5 1343 aa18.22■□□□□ 0.51
DDX55-213ENST00000545042 KIF24Q5T7B8 1368 aa18.21■□□□□ 0.51
DDX55-213ENST00000545042 EXOC5O00471 708 aa18.21■□□□□ 0.51
DDX55-213ENST00000545042 BAG6P46379 1132 aa18.21■□□□□ 0.51
DDX55-213ENST00000545042 KNSTRNQ9Y448 316 aa18.2■□□□□ 0.5
DDX55-213ENST00000545042 WNK3Q9BYP7 1800 aa18.2■□□□□ 0.5
DDX55-213ENST00000545042 SMG6Q86US8 1419 aaKnown RBP18.2■□□□□ 0.5
DDX55-213ENST00000545042 LRRC37A3O60309 1634 aa18.2■□□□□ 0.5
DDX55-213ENST00000545042 FAM208AQ9UK61 1670 aaKnown RBP18.19■□□□□ 0.5
DDX55-213ENST00000545042 DISP2A7MBM2 1401 aa18.19■□□□□ 0.5
DDX55-213ENST00000545042 TRIM37O94972 964 aa18.19■□□□□ 0.5
DDX55-213ENST00000545042 RGPD1P0DJD0 1748 aa18.19■□□□□ 0.5
DDX55-213ENST00000545042 IL2RBP14784 551 aa18.19■□□□□ 0.5
DDX55-213ENST00000545042 NSD2O96028 1365 aa18.18■□□□□ 0.5
DDX55-213ENST00000545042 FLT4P35916 1363 aa18.18■□□□□ 0.5
DDX55-213ENST00000545042 OVOS2A0A0G2JMS6 1433 aa18.18■□□□□ 0.5
DDX55-213ENST00000545042 DEFB132Q7Z7B7 95 aa18.18■□□□□ 0.5
DDX55-213ENST00000545042 PPM1GO15355 546 aaPredicted RBP18.17■□□□□ 0.5
DDX55-213ENST00000545042 INSRP06213 1382 aa18.17■□□□□ 0.5
DDX55-213ENST00000545042 EMILIN1Q9Y6C2 1016 aa18.16■□□□□ 0.5
DDX55-213ENST00000545042 TNS2Q63HR2 1409 aa18.15■□□□□ 0.5
DDX55-213ENST00000545042 TNNT2P45379 298 aaPredicted RBP18.15■□□□□ 0.5
DDX55-213ENST00000545042 HSP90AB2PQ58FF8 381 aa18.15■□□□□ 0.5
DDX55-213ENST00000545042 ANKRD26Q9UPS8 1709 aa18.15■□□□□ 0.5
DDX55-213ENST00000545042 APBA3O96018 575 aa18.14■□□□□ 0.49
DDX55-213ENST00000545042 MORC1Q86VD1 984 aa18.14■□□□□ 0.49
DDX55-213ENST00000545042 MARCH10Q8NA82 808 aaPredicted RBP18.14■□□□□ 0.49
DDX55-213ENST00000545042 PEAK1Q9H792 1746 aa18.12■□□□□ 0.49
DDX55-213ENST00000545042 EN1Q05925 392 aaPredicted RBP18.12■□□□□ 0.49
DDX55-213ENST00000545042 TNS1Q9HBL0 1735 aaKnown RBP18.12■□□□□ 0.49
DDX55-213ENST00000545042 NBPF6Q5VWK0 638 aa18.11■□□□□ 0.49
DDX55-213ENST00000545042 NBPF4Q96M43 638 aa18.11■□□□□ 0.49
DDX55-213ENST00000545042 POLKQ9UBT6 870 aa18.11■□□□□ 0.49
DDX55-213ENST00000545042 WASHC2AQ641Q2 1341 aa18.11■□□□□ 0.49
DDX55-213ENST00000545042 BCL9O00512 1426 aa18.11■□□□□ 0.49
DDX55-213ENST00000545042 MAP2P11137 1827 aaKnown RBP18.11■□□□□ 0.49
DDX55-213ENST00000545042 RAPGEF4Q8WZA2 1011 aa18.1■□□□□ 0.49
DDX55-213ENST00000545042 BCL11BQ9C0K0 894 aaPredicted RBP18.09■□□□□ 0.49
DDX55-213ENST00000545042 RGPD2P0DJD1 1756 aa18.09■□□□□ 0.49
DDX55-213ENST00000545042 PARD3Q8TEW0 1356 aa18.08■□□□□ 0.49
DDX55-213ENST00000545042 AMER1Q5JTC6 1135 aaPredicted RBP18.08■□□□□ 0.48
DDX55-213ENST00000545042 USHBP1Q8N6Y0 703 aa18.08■□□□□ 0.48
DDX55-213ENST00000545042 TATP17735 454 aaPredicted RBP18.07■□□□□ 0.48
DDX55-213ENST00000545042 EZH2Q15910 746 aaKnown RBP18.07■□□□□ 0.48
DDX55-213ENST00000545042 ZCRB1Q8TBF4 217 aaKnown RBP18.07■□□□□ 0.48
DDX55-213ENST00000545042 DDX54Q8TDD1 881 aaKnown RBP18.07■□□□□ 0.48
DDX55-213ENST00000545042 PER1O15534 1290 aaPredicted RBP18.06■□□□□ 0.48
DDX55-213ENST00000545042 CAMKK2Q96RR4 588 aa18.06■□□□□ 0.48
DDX55-213ENST00000545042 SBF2Q86WG5 1849 aa18.05■□□□□ 0.48
DDX55-213ENST00000545042 MEGF6O75095 1541 aa18.04■□□□□ 0.48
DDX55-213ENST00000545042 EIF4A2Q14240 407 aaKnown RBP18.03■□□□□ 0.48
DDX55-213ENST00000545042 CC2D1BQ5T0F9 858 aaKnown RBP18.03■□□□□ 0.48
DDX55-213ENST00000545042 PLSCR1O15162 318 aa18.02■□□□□ 0.48
DDX55-213ENST00000545042 ACSBG1Q96GR2 724 aa18.02■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms