RNA–Protein interactions for RNA: ENST00000544750.1

USP28-212, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 542 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-212ENST00000544750 MYOM1P52179 1685 aa18.69■□□□□ 0.58
USP28-212ENST00000544750 SRPK2P78362 688 aaKnown RBP18.69■□□□□ 0.58
USP28-212ENST00000544750 DDB1Q16531 1140 aa18.69■□□□□ 0.58
USP28-212ENST00000544750 BCL11BQ9C0K0 894 aaPredicted RBP18.69■□□□□ 0.58
USP28-212ENST00000544750 CENPJQ9HC77 1338 aaPredicted RBP18.69■□□□□ 0.58
USP28-212ENST00000544750 PDGFDQ9GZP0 370 aaPredicted RBP18.68■□□□□ 0.58
USP28-212ENST00000544750 AXIN2Q9Y2T1 843 aa18.68■□□□□ 0.58
USP28-212ENST00000544750 CHD4Q14839 1912 aa18.67■□□□□ 0.58
USP28-212ENST00000544750 NLRP6P59044 892 aa18.67■□□□□ 0.58
USP28-212ENST00000544750 MARCH10Q8NA82 808 aaPredicted RBP18.67■□□□□ 0.58
USP28-212ENST00000544750 WDR17Q8IZU2 1322 aa18.67■□□□□ 0.58
USP28-212ENST00000544750 CABP1Q9NZU7 370 aa18.66■□□□□ 0.58
USP28-212ENST00000544750 CPSF1Q10570 1443 aaKnown RBP18.66■□□□□ 0.58
USP28-212ENST00000544750 PTGER2P43116 358 aa18.65■□□□□ 0.58
USP28-212ENST00000544750 TOM1L2Q6ZVM7 507 aa18.65■□□□□ 0.58
USP28-212ENST00000544750 UTRNP46939 3433 aa18.65■□□□□ 0.58
USP28-212ENST00000544750 TRPM1Q7Z4N2 1603 aa18.63■□□□□ 0.57
USP28-212ENST00000544750 ZBTB7CA1YPR0 619 aa18.63■□□□□ 0.57
USP28-212ENST00000544750 DCAF8L1A6NGE4 600 aa18.63■□□□□ 0.57
USP28-212ENST00000544750 ARHGEF25Q86VW2 580 aa18.63■□□□□ 0.57
USP28-212ENST00000544750 CDCA7Q9BWT1 371 aaPredicted RBP18.63■□□□□ 0.57
USP28-212ENST00000544750 NHSQ6T4R5 1651 aa18.61■□□□□ 0.57
USP28-212ENST00000544750 NFAT5O94916 1531 aa18.61■□□□□ 0.57
USP28-212ENST00000544750 ZBTB7AO95365 584 aa18.6■□□□□ 0.57
USP28-212ENST00000544750 TXNRD1Q16881 649 aa18.6■□□□□ 0.57
USP28-212ENST00000544750 CARD10Q9BWT7 1032 aa18.6■□□□□ 0.57
USP28-212ENST00000544750 PAPPAQ13219 1627 aa18.6■□□□□ 0.57
USP28-212ENST00000544750 ABCC6O95255 1503 aa18.59■□□□□ 0.57
USP28-212ENST00000544750 USP54Q70EL1 1684 aa18.59■□□□□ 0.57
USP28-212ENST00000544750 TTC21BQ7Z4L5 1316 aa18.58■□□□□ 0.57
USP28-212ENST00000544750 SLC15A2Q16348 729 aa18.58■□□□□ 0.56
USP28-212ENST00000544750 SGIP1Q9BQI5 828 aa18.58■□□□□ 0.56
USP28-212ENST00000544750 MON2Q7Z3U7 1717 aa18.57■□□□□ 0.56
USP28-212ENST00000544750 ATF5Q9Y2D1 282 aaPredicted RBP18.57■□□□□ 0.56
USP28-212ENST00000544750 TNS2Q63HR2 1409 aa18.57■□□□□ 0.56
USP28-212ENST00000544750 KAT6BQ8WYB5 2073 aa18.56■□□□□ 0.56
USP28-212ENST00000544750 BTAF1O14981 1849 aa18.56■□□□□ 0.56
USP28-212ENST00000544750 ZNF784Q8NCA9 323 aaPredicted RBP18.56■□□□□ 0.56
USP28-212ENST00000544750 KCNH5Q8NCM2 988 aa18.56■□□□□ 0.56
USP28-212ENST00000544750 SYT17Q9BSW7 474 aa18.56■□□□□ 0.56
USP28-212ENST00000544750 STK32BQ9NY57 414 aa18.56■□□□□ 0.56
USP28-212ENST00000544750 CCDC7Q96M83 1385 aa18.55■□□□□ 0.56
USP28-212ENST00000544750 EVC2Q86UK5 1308 aa18.55■□□□□ 0.56
USP28-212ENST00000544750 ZNF692Q9BU19 519 aaPredicted RBP18.55■□□□□ 0.56
USP28-212ENST00000544750 LTN1O94822 1766 aa18.55■□□□□ 0.56
USP28-212ENST00000544750 TTC21AQ8NDW8 1320 aa18.54■□□□□ 0.56
USP28-212ENST00000544750 EXOC5O00471 708 aa18.54■□□□□ 0.56
USP28-212ENST00000544750 FHDC1Q9C0D6 1143 aaPredicted RBP18.54■□□□□ 0.56
USP28-212ENST00000544750 COL24A1Q17RW2 1714 aa18.54■□□□□ 0.56
USP28-212ENST00000544750 QSER1Q2KHR3 1735 aa18.53■□□□□ 0.56
USP28-212ENST00000544750 MTFR1LQ9H019 292 aa18.53■□□□□ 0.56
USP28-212ENST00000544750 CSB-PGBD3P0DP91 1061 aa18.51■□□□□ 0.55
USP28-212ENST00000544750 SOX12O15370 315 aa18.5■□□□□ 0.55
USP28-212ENST00000544750 L3MBTL2Q969R5 705 aa18.5■□□□□ 0.55
USP28-212ENST00000544750 MAP3K5Q99683 1374 aa18.5■□□□□ 0.55
USP28-212ENST00000544750 USP31Q70CQ4 1352 aa18.49■□□□□ 0.55
USP28-212ENST00000544750 TUBGCP6Q96RT7 1819 aa18.48■□□□□ 0.55
USP28-212ENST00000544750 ERBB3P21860 1342 aa18.48■□□□□ 0.55
USP28-212ENST00000544750 KTN1Q86UP2 1357 aaKnown RBP18.47■□□□□ 0.55
USP28-212ENST00000544750 CD163L1Q9NR16 1453 aa18.46■□□□□ 0.55
USP28-212ENST00000544750 ACSBG1Q96GR2 724 aa18.46■□□□□ 0.55
USP28-212ENST00000544750 ZNF827Q17R98 1081 aa18.45■□□□□ 0.54
USP28-212ENST00000544750 ARXQ96QS3 562 aa18.45■□□□□ 0.54
USP28-212ENST00000544750 LRRC4BQ9NT99 713 aa18.44■□□□□ 0.54
USP28-212ENST00000544750 IL2RBP14784 551 aa18.43■□□□□ 0.54
USP28-212ENST00000544750 SBNO2Q9Y2G9 1366 aa18.42■□□□□ 0.54
USP28-212ENST00000544750 LY75O60449 1722 aa18.42■□□□□ 0.54
USP28-212ENST00000544750 ROCK2O75116 1388 aaKnown RBP18.42■□□□□ 0.54
USP28-212ENST00000544750 FAM208AQ9UK61 1670 aaKnown RBP18.41■□□□□ 0.54
USP28-212ENST00000544750 C1QTNF8P60827 252 aa18.41■□□□□ 0.54
USP28-212ENST00000544750 AKT1S1Q96B36 256 aa18.41■□□□□ 0.54
USP28-212ENST00000544750 NLRP2Q9NX02 1062 aa18.41■□□□□ 0.54
USP28-212ENST00000544750 SHANK3Q9BYB0 1731 aa18.4■□□□□ 0.54
USP28-212ENST00000544750 NME9Q86XW9 330 aa18.4■□□□□ 0.54
USP28-212ENST00000544750 SUGP2Q8IX01 1082 aaKnown RBP eCLIP18.4■□□□□ 0.54
USP28-212ENST00000544750 GOLGB1Q14789 3259 aaKnown RBP18.4■□□□□ 0.54
USP28-212ENST00000544750 ANKRD24Q8TF21 1146 aa18.39■□□□□ 0.53
USP28-212ENST00000544750 RGPD2P0DJD1 1756 aa18.38■□□□□ 0.53
USP28-212ENST00000544750 SLC16A10Q8TF71 515 aa18.38■□□□□ 0.53
USP28-212ENST00000544750 SIN3AQ96ST3 1273 aa18.38■□□□□ 0.53
USP28-212ENST00000544750 DOT1LQ8TEK3 1739 aa18.37■□□□□ 0.53
USP28-212ENST00000544750 SENP3-EIF4A1A0A087X0R7 540 aa18.36■□□□□ 0.53
USP28-212ENST00000544750 PNPLA7Q6ZV29 1317 aa18.36■□□□□ 0.53
USP28-212ENST00000544750 EDC4Q6P2E9 1401 aaKnown RBP18.35■□□□□ 0.53
USP28-212ENST00000544750 SLC27A3Q5K4L6 730 aa18.35■□□□□ 0.53
USP28-212ENST00000544750 GPR162Q16538 588 aa18.33■□□□□ 0.52
USP28-212ENST00000544750 NSD2O96028 1365 aa18.32■□□□□ 0.52
USP28-212ENST00000544750 IP6K1Q92551 441 aa18.32■□□□□ 0.52
USP28-212ENST00000544750 SLC12A5Q9H2X9 1139 aa18.32■□□□□ 0.52
USP28-212ENST00000544750 A0A1W2PP64 1363 aa18.31■□□□□ 0.52
USP28-212ENST00000544750 ANKRD36BQ8N2N9 1353 aa18.3■□□□□ 0.52
USP28-212ENST00000544750 POLD1P28340 1107 aa18.29■□□□□ 0.52
USP28-212ENST00000544750 KCNQ4P56696 695 aa18.29■□□□□ 0.52
USP28-212ENST00000544750 HDGFL2Q7Z4V5 671 aaPredicted RBP18.29■□□□□ 0.52
USP28-212ENST00000544750 NLGN2Q8NFZ4 835 aa18.29■□□□□ 0.52
USP28-212ENST00000544750 DDX54Q8TDD1 881 aaKnown RBP18.29■□□□□ 0.52
USP28-212ENST00000544750 TAF1LQ8IZX4 1826 aa18.28■□□□□ 0.52
USP28-212ENST00000544750 TMC1Q8TDI8 760 aa18.28■□□□□ 0.52
USP28-212ENST00000544750 CEP350Q5VT06 3117 aa18.27■□□□□ 0.52
USP28-212ENST00000544750 PRIM1P49642 420 aaKnown RBP18.27■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 64.8 ms