RNA–Protein interactions for RNA: ENST00000543766.2

VPS13D-212, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2 BASIC

Gene VPS13D, Length 3,838 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-212ENST00000543766 RGL2O15211 777 aa10.79□□□□□ -0.68
VPS13D-212ENST00000543766 MKRN3Q13064 507 aaKnown RBP10.79□□□□□ -0.68
VPS13D-212ENST00000543766 CSPP1Q1MSJ5 1256 aa10.79□□□□□ -0.68
VPS13D-212ENST00000543766 SIRT1Q96EB6 747 aa10.79□□□□□ -0.68
VPS13D-212ENST00000543766 SRPK2P78362 688 aaKnown RBP10.79□□□□□ -0.68
VPS13D-212ENST00000543766 LRRC27Q9C0I9 530 aa10.79□□□□□ -0.68
VPS13D-212ENST00000543766 CCDC18Q5T9S5 1454 aa10.79□□□□□ -0.68
VPS13D-212ENST00000543766 RPGRIP1LQ68CZ1 1315 aa10.79□□□□□ -0.68
VPS13D-212ENST00000543766 ABCD1P33897 745 aa10.79□□□□□ -0.68
VPS13D-212ENST00000543766 CA8P35219 290 aa10.79□□□□□ -0.68
VPS13D-212ENST00000543766 SF3B2Q13435 895 aaKnown RBP10.79□□□□□ -0.68
VPS13D-212ENST00000543766 EFCC1Q9HA90 598 aa10.79□□□□□ -0.68
VPS13D-212ENST00000543766 NAT2P11245 290 aa10.78□□□□□ -0.68
VPS13D-212ENST00000543766 SUPT6HQ7KZ85 1726 aaKnown RBP10.78□□□□□ -0.68
VPS13D-212ENST00000543766 PKD2Q13563 968 aa10.78□□□□□ -0.68
VPS13D-212ENST00000543766 SUFUQ9UMX1 484 aa10.78□□□□□ -0.68
VPS13D-212ENST00000543766 DIS3Q9Y2L1 958 aaKnown RBP10.78□□□□□ -0.68
VPS13D-212ENST00000543766 UHRF1BP1LA0JNW5 1464 aa10.78□□□□□ -0.68
VPS13D-212ENST00000543766 SLC20A2Q08357 652 aa10.78□□□□□ -0.68
VPS13D-212ENST00000543766 CLUAP1Q96AJ1 413 aa10.78□□□□□ -0.68
VPS13D-212ENST00000543766 NBPF3Q9H094 633 aa10.78□□□□□ -0.68
VPS13D-212ENST00000543766 MSNP26038 577 aaKnown RBP10.77□□□□□ -0.68
VPS13D-212ENST00000543766 TMCO5BA8MYB1 307 aa10.77□□□□□ -0.69
VPS13D-212ENST00000543766 ABL2P42684 1182 aa10.77□□□□□ -0.69
VPS13D-212ENST00000543766 PHLDB1Q86UU1 1377 aa10.77□□□□□ -0.69
VPS13D-212ENST00000543766 KCNA1Q09470 495 aa10.77□□□□□ -0.69
VPS13D-212ENST00000543766 WWC3Q9ULE0 1092 aa10.77□□□□□ -0.69
VPS13D-212ENST00000543766 RABL2BQ9UNT1 228 aa10.77□□□□□ -0.69
VPS13D-212ENST00000543766 TRIML1Q8N9V2 468 aa10.76□□□□□ -0.69
VPS13D-212ENST00000543766 DRC1Q96MC2 740 aa10.76□□□□□ -0.69
VPS13D-212ENST00000543766 MYOM3Q5VTT5 1437 aa10.76□□□□□ -0.69
VPS13D-212ENST00000543766 SLC4A3P48751 1232 aa10.76□□□□□ -0.69
VPS13D-212ENST00000543766 UHMK1Q8TAS1 419 aaKnown RBP10.76□□□□□ -0.69
VPS13D-212ENST00000543766 METTL14Q9HCE5 456 aaKnown RBP10.76□□□□□ -0.69
VPS13D-212ENST00000543766 CCP110O43303 1012 aa10.76□□□□□ -0.69
VPS13D-212ENST00000543766 FRAT2O75474 233 aaPredicted RBP10.76□□□□□ -0.69
VPS13D-212ENST00000543766 LIG1P18858 919 aa10.76□□□□□ -0.69
VPS13D-212ENST00000543766 HSP90AB2PQ58FF8 381 aa10.76□□□□□ -0.69
VPS13D-212ENST00000543766 CIZ1Q9ULV3 898 aaPredicted RBP10.76□□□□□ -0.69
VPS13D-212ENST00000543766 PTPN23Q9H3S7 1636 aa10.75□□□□□ -0.69
VPS13D-212ENST00000543766 DYTNA2CJ06 578 aa10.75□□□□□ -0.69
VPS13D-212ENST00000543766 CARNS1A5YM72 827 aa10.75□□□□□ -0.69
VPS13D-212ENST00000543766 CCDC34Q96HJ3 373 aa10.75□□□□□ -0.69
VPS13D-212ENST00000543766 TPX2Q9ULW0 747 aaKnown RBP10.75□□□□□ -0.69
VPS13D-212ENST00000543766 RIPK4P57078 832 aa10.75□□□□□ -0.69
VPS13D-212ENST00000543766 PICK1Q9NRD5 415 aa10.75□□□□□ -0.69
VPS13D-212ENST00000543766 PDZRN4Q6ZMN7 1036 aaPredicted RBP10.75□□□□□ -0.69
VPS13D-212ENST00000543766 UACAQ9BZF9 1416 aa10.75□□□□□ -0.69
VPS13D-212ENST00000543766 CCDC7Q96M83 1385 aa10.74□□□□□ -0.69
VPS13D-212ENST00000543766 CYB5RLQ6IPT4 315 aa10.74□□□□□ -0.69
VPS13D-212ENST00000543766 CCDC70Q6NSX1 233 aa10.74□□□□□ -0.69
VPS13D-212ENST00000543766 CPSF2Q9P2I0 782 aaKnown RBP10.74□□□□□ -0.69
VPS13D-212ENST00000543766 OSCARQ8IYS5 282 aa10.74□□□□□ -0.69
VPS13D-212ENST00000543766 SDR16C5Q8N3Y7 309 aa10.74□□□□□ -0.69
VPS13D-212ENST00000543766 MNS1Q8NEH6 495 aa10.74□□□□□ -0.69
VPS13D-212ENST00000543766 TNPO1Q92973 898 aaKnown RBP10.74□□□□□ -0.69
VPS13D-212ENST00000543766 KIAA0556O60303 1618 aa10.74□□□□□ -0.69
VPS13D-212ENST00000543766 CFAP53Q96M91 514 aa10.74□□□□□ -0.69
VPS13D-212ENST00000543766 TONSLQ96HA7 1378 aa10.73□□□□□ -0.69
VPS13D-212ENST00000543766 ZC3H12AQ5D1E8 599 aaKnown RBP10.73□□□□□ -0.69
VPS13D-212ENST00000543766 MAF1Q9H063 256 aa10.73□□□□□ -0.69
VPS13D-212ENST00000543766 ZNF777Q9ULD5 760 aaPredicted RBP10.73□□□□□ -0.69
VPS13D-212ENST00000543766 NUB1Q9Y5A7 615 aa10.73□□□□□ -0.69
VPS13D-212ENST00000543766 FSD2A1L4K1 749 aa10.73□□□□□ -0.69
VPS13D-212ENST00000543766 PSMD2Q13200 908 aa10.73□□□□□ -0.69
VPS13D-212ENST00000543766 CHMP7Q8WUX9 453 aaPredicted RBP10.73□□□□□ -0.69
VPS13D-212ENST00000543766 PUS10Q3MIT2 529 aaKnown RBP10.72□□□□□ -0.69
VPS13D-212ENST00000543766 V9GYY5 206 aaPredicted RBP10.72□□□□□ -0.69
VPS13D-212ENST00000543766 DENND4BO75064 1496 aaPredicted RBP10.72□□□□□ -0.69
VPS13D-212ENST00000543766 C1QTNF12Q5T7M4 302 aa10.72□□□□□ -0.69
VPS13D-212ENST00000543766 SPATA32Q96LK8 384 aa10.72□□□□□ -0.69
VPS13D-212ENST00000543766 SPATA31E1Q6ZUB1 1445 aa10.72□□□□□ -0.69
VPS13D-212ENST00000543766 UNCXA6NJT0 531 aa10.72□□□□□ -0.69
VPS13D-212ENST00000543766 GOLGA6L22H0YM25 854 aa10.72□□□□□ -0.69
VPS13D-212ENST00000543766 ECM2O94769 699 aaPredicted RBP10.72□□□□□ -0.69
VPS13D-212ENST00000543766 FMNL2Q96PY5 1086 aa10.72□□□□□ -0.69
VPS13D-212ENST00000543766 SLC26A8Q96RN1 970 aa10.72□□□□□ -0.69
VPS13D-212ENST00000543766 BSDC1Q9NW68 430 aaPredicted RBP10.72□□□□□ -0.69
VPS13D-212ENST00000543766 DONSONQ9NYP3 566 aa10.72□□□□□ -0.69
VPS13D-212ENST00000543766 CALCOCO1Q9P1Z2 691 aa10.72□□□□□ -0.69
VPS13D-212ENST00000543766 DHX29Q7Z478 1369 aaKnown RBP10.72□□□□□ -0.69
VPS13D-212ENST00000543766 TCOF1Q13428 1488 aaKnown RBP10.72□□□□□ -0.69
VPS13D-212ENST00000543766 DEF6Q9H4E7 631 aa10.71□□□□□ -0.69
VPS13D-212ENST00000543766 CXorf56Q9H5V9 222 aa10.71□□□□□ -0.69
VPS13D-212ENST00000543766 KIAA0586Q9BVV6 1533 aa10.71□□□□□ -0.69
VPS13D-212ENST00000543766 HSPA5P11021 654 aaKnown RBP10.71□□□□□ -0.69
VPS13D-212ENST00000543766 FGD6Q6ZV73 1430 aa10.71□□□□□ -0.69
VPS13D-212ENST00000543766 PHC3Q8NDX5 983 aa10.71□□□□□ -0.69
VPS13D-212ENST00000543766 MORC4Q8TE76 937 aa10.71□□□□□ -0.69
VPS13D-212ENST00000543766 HTATSF1O43719 755 aaKnown RBP10.71□□□□□ -0.7
VPS13D-212ENST00000543766 MRS2Q9HD23 443 aa10.71□□□□□ -0.7
VPS13D-212ENST00000543766 CC2D1AQ6P1N0 951 aaPredicted RBP10.7□□□□□ -0.7
VPS13D-212ENST00000543766 GCC2Q8IWJ2 1684 aa10.7□□□□□ -0.7
VPS13D-212ENST00000543766 MAGI3Q5TCQ9 1506 aa10.7□□□□□ -0.7
VPS13D-212ENST00000543766 TTC19Q6DKK2 380 aaPredicted RBP10.7□□□□□ -0.7
VPS13D-212ENST00000543766 PDILTQ8N807 584 aa10.7□□□□□ -0.7
VPS13D-212ENST00000543766 G3BP2Q9UN86 482 aaKnown RBP10.7□□□□□ -0.7
VPS13D-212ENST00000543766 LRPPRCP42704 1394 aaKnown RBP10.7□□□□□ -0.7
VPS13D-212ENST00000543766 RRP1P56182 461 aaKnown RBP10.7□□□□□ -0.7
VPS13D-212ENST00000543766 SART3Q15020 963 aaKnown RBP10.7□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 96 ms