RNA–Protein interactions for RNA: ENST00000543397.1

SRGAP1-206, Transcript of SLIT-ROBO Rho GTPase activating protein 1, humanhuman

TSL 1 (best) BASIC

Gene SRGAP1, Length 5,652 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRGAP1-206ENST00000543397 IKQ13123 557 aaPredicted RBP8.35□□□□□ -1.07
SRGAP1-206ENST00000543397 FCHSD2O94868 740 aa8.35□□□□□ -1.07
SRGAP1-206ENST00000543397 INTS3Q68E01 1043 aaKnown RBP8.35□□□□□ -1.07
SRGAP1-206ENST00000543397 KRT28Q7Z3Y7 464 aa8.35□□□□□ -1.07
SRGAP1-206ENST00000543397 SRCIN1Q9C0H9 1055 aa8.35□□□□□ -1.07
SRGAP1-206ENST00000543397 NSD3Q9BZ95 1437 aa8.34□□□□□ -1.07
SRGAP1-206ENST00000543397 PTCD1O75127 700 aaKnown RBP8.34□□□□□ -1.07
SRGAP1-206ENST00000543397 ERC1Q8IUD2 1116 aa8.34□□□□□ -1.07
SRGAP1-206ENST00000543397 CCAR1Q8IX12 1150 aaKnown RBP8.34□□□□□ -1.07
SRGAP1-206ENST00000543397 BICDL1Q6ZP65 573 aa8.34□□□□□ -1.07
SRGAP1-206ENST00000543397 TSR2Q969E8 191 aaKnown RBP8.34□□□□□ -1.07
SRGAP1-206ENST00000543397 GNAI2P04899 355 aa8.34□□□□□ -1.07
SRGAP1-206ENST00000543397 CCDC57Q2TAC2 916 aa8.34□□□□□ -1.07
SRGAP1-206ENST00000543397 CCDC158Q5M9N0 1113 aa8.34□□□□□ -1.07
SRGAP1-206ENST00000543397 BRPF3Q9ULD4 1205 aa8.34□□□□□ -1.07
SRGAP1-206ENST00000543397 ADGRF5Q8IZF2 1346 aa8.34□□□□□ -1.07
SRGAP1-206ENST00000543397 NCOA1Q15788 1441 aa8.34□□□□□ -1.07
SRGAP1-206ENST00000543397 GNAT3A8MTJ3 354 aa8.34□□□□□ -1.08
SRGAP1-206ENST00000543397 PES1O00541 588 aaKnown RBP8.34□□□□□ -1.08
SRGAP1-206ENST00000543397 TPD52L1Q16890 204 aaPredicted RBP8.34□□□□□ -1.08
SRGAP1-206ENST00000543397 CEP89Q96ST8 783 aa8.34□□□□□ -1.08
SRGAP1-206ENST00000543397 DNAJC2Q99543 621 aaKnown RBP8.34□□□□□ -1.08
SRGAP1-206ENST00000543397 NINLQ9Y2I6 1382 aa8.33□□□□□ -1.08
SRGAP1-206ENST00000543397 EXOC5O00471 708 aa8.33□□□□□ -1.08
SRGAP1-206ENST00000543397 WDR78Q5VTH9 848 aa8.33□□□□□ -1.08
SRGAP1-206ENST00000543397 CERS3Q8IU89 383 aa8.33□□□□□ -1.08
SRGAP1-206ENST00000543397 ZNF652Q9Y2D9 606 aa8.33□□□□□ -1.08
SRGAP1-206ENST00000543397 FAM135AQ9P2D6 1515 aa8.33□□□□□ -1.08
SRGAP1-206ENST00000543397 CNTROBQ8N137 903 aa8.33□□□□□ -1.08
SRGAP1-206ENST00000543397 CCT4P50991 539 aaKnown RBP8.33□□□□□ -1.08
SRGAP1-206ENST00000543397 SAFBQ15424 915 aaKnown RBP eCLIP8.33□□□□□ -1.08
SRGAP1-206ENST00000543397 AMOTQ4VCS5 1084 aa8.33□□□□□ -1.08
SRGAP1-206ENST00000543397 PHF14O94880 888 aa8.33□□□□□ -1.08
SRGAP1-206ENST00000543397 SLC3A2P08195 630 aaKnown RBP8.33□□□□□ -1.08
SRGAP1-206ENST00000543397 SART3Q15020 963 aaKnown RBP8.33□□□□□ -1.08
SRGAP1-206ENST00000543397 NME9Q86XW9 330 aa8.33□□□□□ -1.08
SRGAP1-206ENST00000543397 PTPN23Q9H3S7 1636 aa8.33□□□□□ -1.08
SRGAP1-206ENST00000543397 ZPR1O75312 459 aa8.32□□□□□ -1.08
SRGAP1-206ENST00000543397 FAM193AP78312 1265 aa8.32□□□□□ -1.08
SRGAP1-206ENST00000543397 RBM10P98175 930 aaKnown RBP8.32□□□□□ -1.08
SRGAP1-206ENST00000543397 CCDC47Q96A33 483 aaKnown RBP8.32□□□□□ -1.08
SRGAP1-206ENST00000543397 PLCH2O75038 1416 aa8.32□□□□□ -1.08
SRGAP1-206ENST00000543397 TTC39AQ5SRH9 613 aa8.32□□□□□ -1.08
SRGAP1-206ENST00000543397 MPRIPQ6WCQ1 1025 aa8.32□□□□□ -1.08
SRGAP1-206ENST00000543397 UNC13AQ9UPW8 1703 aa8.32□□□□□ -1.08
SRGAP1-206ENST00000543397 FOXD4L6Q3SYB3 417 aaPredicted RBP8.32□□□□□ -1.08
SRGAP1-206ENST00000543397 FOXD4L3Q6VB84 417 aaPredicted RBP8.32□□□□□ -1.08
SRGAP1-206ENST00000543397 KDM5BQ9UGL1 1544 aa8.31□□□□□ -1.08
SRGAP1-206ENST00000543397 NOS1P29475 1434 aa8.31□□□□□ -1.08
SRGAP1-206ENST00000543397 UHRF1BP1LA0JNW5 1464 aa8.31□□□□□ -1.08
SRGAP1-206ENST00000543397 WDR7Q9Y4E6 1490 aa8.31□□□□□ -1.08
SRGAP1-206ENST00000543397 NFE2L2Q16236 605 aa8.31□□□□□ -1.08
SRGAP1-206ENST00000543397 RBM5P52756 815 aaKnown RBP eCLIP8.31□□□□□ -1.08
SRGAP1-206ENST00000543397 WDR63Q8IWG1 891 aa8.31□□□□□ -1.08
SRGAP1-206ENST00000543397 CDCA7LQ96GN5 454 aa8.31□□□□□ -1.08
SRGAP1-206ENST00000543397 DDX24Q9GZR7 859 aaKnown RBP eCLIP8.31□□□□□ -1.08
SRGAP1-206ENST00000543397 ZNF518AQ6AHZ1 1483 aa8.31□□□□□ -1.08
SRGAP1-206ENST00000543397 PDE4AP27815 886 aa8.31□□□□□ -1.08
SRGAP1-206ENST00000543397 SIL1Q9H173 461 aa8.31□□□□□ -1.08
SRGAP1-206ENST00000543397 ATP10BO94823 1461 aa8.3□□□□□ -1.08
SRGAP1-206ENST00000543397 CT47B1P0C2W7 299 aaPredicted RBP8.3□□□□□ -1.08
SRGAP1-206ENST00000543397 NPHP3Q7Z494 1330 aa8.3□□□□□ -1.08
SRGAP1-206ENST00000543397 FAM177A1Q8N128 213 aaPredicted RBP8.3□□□□□ -1.08
SRGAP1-206ENST00000543397 USHBP1Q8N6Y0 703 aa8.3□□□□□ -1.08
SRGAP1-206ENST00000543397 XBP1P17861 261 aa8.3□□□□□ -1.08
SRGAP1-206ENST00000543397 IGHMBP2P38935 993 aaKnown RBP8.3□□□□□ -1.08
SRGAP1-206ENST00000543397 HSPA2P54652 639 aa8.3□□□□□ -1.08
SRGAP1-206ENST00000543397 CEP126Q9P2H0 1117 aa8.3□□□□□ -1.08
SRGAP1-206ENST00000543397 HIP1O00291 1037 aa8.3□□□□□ -1.08
SRGAP1-206ENST00000543397 TPM2P07951 284 aa8.3□□□□□ -1.08
SRGAP1-206ENST00000543397 NOC3LQ8WTT2 800 aaKnown RBP8.29□□□□□ -1.08
SRGAP1-206ENST00000543397 IPO9Q96P70 1041 aaKnown RBP8.29□□□□□ -1.08
SRGAP1-206ENST00000543397 BRMS1Q9HCU9 246 aa8.29□□□□□ -1.08
SRGAP1-206ENST00000543397 A2MP01023 1474 aa8.29□□□□□ -1.08
SRGAP1-206ENST00000543397 C14orf93Q9H972 538 aaKnown RBP8.29□□□□□ -1.08
SRGAP1-206ENST00000543397 NOB1Q9ULX3 412 aaKnown RBP8.29□□□□□ -1.08
SRGAP1-206ENST00000543397 CDC45O75419 566 aa8.29□□□□□ -1.08
SRGAP1-206ENST00000543397 SETQ01105 290 aaPredicted RBP8.29□□□□□ -1.08
SRGAP1-206ENST00000543397 BIVM-ERCC5R4GMW8 1640 aa8.29□□□□□ -1.08
SRGAP1-206ENST00000543397 VPS37CA5D8V6 355 aaPredicted RBP8.29□□□□□ -1.08
SRGAP1-206ENST00000543397 PSMA5P28066 241 aa8.29□□□□□ -1.08
SRGAP1-206ENST00000543397 SLC4A3P48751 1232 aa8.29□□□□□ -1.08
SRGAP1-206ENST00000543397 TSR1Q2NL82 804 aaKnown RBP8.29□□□□□ -1.08
SRGAP1-206ENST00000543397 NACAP1Q9BZK3 213 aa8.29□□□□□ -1.08
SRGAP1-206ENST00000543397 SMC3Q9UQE7 1217 aa8.29□□□□□ -1.08
SRGAP1-206ENST00000543397 GPATCH8Q9UKJ3 1502 aaKnown RBP8.29□□□□□ -1.08
SRGAP1-206ENST00000543397 TPM3P06753 285 aa8.29□□□□□ -1.08
SRGAP1-206ENST00000543397 PRM3Q9NNZ6 103 aa8.29□□□□□ -1.08
SRGAP1-206ENST00000543397 MAP3K1Q13233 1512 aa8.29□□□□□ -1.08
SRGAP1-206ENST00000543397 BECN2A8MW95 431 aa8.28□□□□□ -1.08
SRGAP1-206ENST00000543397 RRP12Q5JTH9 1297 aaKnown RBP8.28□□□□□ -1.08
SRGAP1-206ENST00000543397 C1orf115Q9H7X2 142 aa8.28□□□□□ -1.08
SRGAP1-206ENST00000543397 EMILIN1Q9Y6C2 1016 aa8.28□□□□□ -1.08
SRGAP1-206ENST00000543397 ATP2B2Q01814 1243 aa8.28□□□□□ -1.08
SRGAP1-206ENST00000543397 PLCD3Q8N3E9 789 aa8.28□□□□□ -1.08
SRGAP1-206ENST00000543397 TMPOP42166 694 aaKnown RBP8.28□□□□□ -1.08
SRGAP1-206ENST00000543397 THOC2Q8NI27 1593 aaKnown RBP8.28□□□□□ -1.08
SRGAP1-206ENST00000543397 CHRNA2Q15822 529 aa8.28□□□□□ -1.08
SRGAP1-206ENST00000543397 HOOK1Q9UJC3 728 aaKnown RBP8.28□□□□□ -1.08
SRGAP1-206ENST00000543397 DDX11L8A8MPP1 907 aa8.27□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 69.9 ms