RNA–Protein interactions for RNA: ENST00000540387.5

CTNNA1-243, Transcript of catenin alpha 1, humanhuman

TSL 1 (best) BASIC

Gene CTNNA1, Length 2,684 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTNNA1-243ENST00000540387 IGHDP01880 384 aa11.82□□□□□ -0.52
CTNNA1-243ENST00000540387 CSPP1Q1MSJ5 1256 aa11.82□□□□□ -0.52
CTNNA1-243ENST00000540387 ZFP91Q96JP5 570 aaPredicted RBP11.82□□□□□ -0.52
CTNNA1-243ENST00000540387 EVC2Q86UK5 1308 aa11.82□□□□□ -0.52
CTNNA1-243ENST00000540387 ZNF692Q9BU19 519 aaPredicted RBP11.82□□□□□ -0.52
CTNNA1-243ENST00000540387 DLC1Q96QB1 1528 aa11.81□□□□□ -0.52
CTNNA1-243ENST00000540387 CDK11BP21127 795 aaKnown RBP11.81□□□□□ -0.52
CTNNA1-243ENST00000540387 NLRP13Q86W25 1043 aa11.81□□□□□ -0.52
CTNNA1-243ENST00000540387 RBM33Q96EV2 1170 aaKnown RBP11.81□□□□□ -0.52
CTNNA1-243ENST00000540387 PIK3R4Q99570 1358 aa11.81□□□□□ -0.52
CTNNA1-243ENST00000540387 SRPK2P78362 688 aaKnown RBP11.81□□□□□ -0.52
CTNNA1-243ENST00000540387 CDK19Q9BWU1 502 aa11.81□□□□□ -0.52
CTNNA1-243ENST00000540387 FAM135BQ49AJ0 1406 aa11.8□□□□□ -0.52
CTNNA1-243ENST00000540387 SKOR2Q2VWA4 1001 aaPredicted RBP11.8□□□□□ -0.52
CTNNA1-243ENST00000540387 GOLGA6L2Q8N9W4 650 aaPredicted RBP11.8□□□□□ -0.52
CTNNA1-243ENST00000540387 PANK3Q9H999 370 aa11.8□□□□□ -0.52
CTNNA1-243ENST00000540387 CGNQ9P2M7 1197 aaKnown RBP11.8□□□□□ -0.52
CTNNA1-243ENST00000540387 DIP2AQ14689 1571 aa11.8□□□□□ -0.52
CTNNA1-243ENST00000540387 ATP2B3Q16720 1220 aa11.79□□□□□ -0.52
CTNNA1-243ENST00000540387 DNTTIP2Q5QJE6 756 aaKnown RBP11.79□□□□□ -0.52
CTNNA1-243ENST00000540387 SLC12A5Q9H2X9 1139 aa11.79□□□□□ -0.52
CTNNA1-243ENST00000540387 QRICH2Q9H0J4 1663 aa11.79□□□□□ -0.52
CTNNA1-243ENST00000540387 BLMP54132 1417 aaPredicted RBP11.79□□□□□ -0.52
CTNNA1-243ENST00000540387 AMER1Q5JTC6 1135 aaPredicted RBP11.79□□□□□ -0.52
CTNNA1-243ENST00000540387 WASLO00401 505 aaPredicted RBP11.78□□□□□ -0.52
CTNNA1-243ENST00000540387 DHX37Q8IY37 1157 aaKnown RBP11.78□□□□□ -0.52
CTNNA1-243ENST00000540387 TNPO1Q92973 898 aaKnown RBP11.78□□□□□ -0.52
CTNNA1-243ENST00000540387 TULP4Q9NRJ4 1543 aa11.78□□□□□ -0.52
CTNNA1-243ENST00000540387 TEX2Q8IWB9 1127 aa11.77□□□□□ -0.52
CTNNA1-243ENST00000540387 ZNF710Q8N1W2 664 aa11.77□□□□□ -0.52
CTNNA1-243ENST00000540387 ZKSCAN5Q9Y2L8 839 aa11.77□□□□□ -0.52
CTNNA1-243ENST00000540387 PER1O15534 1290 aaPredicted RBP11.77□□□□□ -0.53
CTNNA1-243ENST00000540387 PUS7Q96PZ0 661 aaKnown RBP11.77□□□□□ -0.53
CTNNA1-243ENST00000540387 CHMP4AQ9BY43 222 aa11.77□□□□□ -0.53
CTNNA1-243ENST00000540387 CPS1P31327 1500 aa11.77□□□□□ -0.53
CTNNA1-243ENST00000540387 NUTM2FA1L443 756 aa11.76□□□□□ -0.53
CTNNA1-243ENST00000540387 DDIT3P35638 169 aa11.76□□□□□ -0.53
CTNNA1-243ENST00000540387 JARID2Q92833 1246 aaPredicted RBP11.76□□□□□ -0.53
CTNNA1-243ENST00000540387 GBP4Q96PP9 640 aa11.76□□□□□ -0.53
CTNNA1-243ENST00000540387 DUSP27Q5VZP5 1158 aa11.76□□□□□ -0.53
CTNNA1-243ENST00000540387 PTCH1Q13635 1447 aa11.76□□□□□ -0.53
CTNNA1-243ENST00000540387 CHRM1P11229 460 aaPredicted RBP11.75□□□□□ -0.53
CTNNA1-243ENST00000540387 MYRIPQ8NFW9 859 aa11.75□□□□□ -0.53
CTNNA1-243ENST00000540387 INSRP06213 1382 aa11.75□□□□□ -0.53
CTNNA1-243ENST00000540387 PDLIM2Q96JY6 352 aa11.75□□□□□ -0.53
CTNNA1-243ENST00000540387 KNDC1Q76NI1 1749 aa11.75□□□□□ -0.53
CTNNA1-243ENST00000540387 PTMSP20962 102 aa11.74□□□□□ -0.53
CTNNA1-243ENST00000540387 MCM5P33992 734 aa11.74□□□□□ -0.53
CTNNA1-243ENST00000540387 TSC1Q92574 1164 aa11.74□□□□□ -0.53
CTNNA1-243ENST00000540387 SECISBP2LQ93073 1101 aaKnown RBP11.74□□□□□ -0.53
CTNNA1-243ENST00000540387 CABP1Q9NZU7 370 aa11.74□□□□□ -0.53
CTNNA1-243ENST00000540387 PARD3Q8TEW0 1356 aa11.74□□□□□ -0.53
CTNNA1-243ENST00000540387 NCOA3Q9Y6Q9 1424 aa11.74□□□□□ -0.53
CTNNA1-243ENST00000540387 IGSF3O75054 1194 aa11.74□□□□□ -0.53
CTNNA1-243ENST00000540387 IRX5P78411 483 aaPredicted RBP11.74□□□□□ -0.53
CTNNA1-243ENST00000540387 MAPK8IP2Q13387 824 aaPredicted RBP11.74□□□□□ -0.53
CTNNA1-243ENST00000540387 PROSER2Q86WR7 435 aaPredicted RBP11.74□□□□□ -0.53
CTNNA1-243ENST00000540387 CARD14Q9BXL6 1004 aa11.74□□□□□ -0.53
CTNNA1-243ENST00000540387 IBTKQ9P2D0 1353 aaPredicted RBP11.74□□□□□ -0.53
CTNNA1-243ENST00000540387 HSCBQ8IWL3 235 aa11.73□□□□□ -0.53
CTNNA1-243ENST00000540387 NUDT16Q96DE0 195 aaKnown RBP11.73□□□□□ -0.53
CTNNA1-243ENST00000540387 XRN1Q8IZH2 1706 aaKnown RBP11.73□□□□□ -0.53
CTNNA1-243ENST00000540387 CHD2O14647 1828 aaKnown RBP11.73□□□□□ -0.53
CTNNA1-243ENST00000540387 STRCQ7RTU9 1775 aa11.73□□□□□ -0.53
CTNNA1-243ENST00000540387 ATAD2Q6PL18 1390 aa11.73□□□□□ -0.53
CTNNA1-243ENST00000540387 C22orf23Q9BZE7 217 aa11.73□□□□□ -0.53
CTNNA1-243ENST00000540387 SIPA1L2Q9P2F8 1722 aaPredicted RBP11.72□□□□□ -0.53
CTNNA1-243ENST00000540387 PRR36Q9H6K5 1346 aa11.72□□□□□ -0.53
CTNNA1-243ENST00000540387 SPDYE4A6NLX3 237 aa11.72□□□□□ -0.53
CTNNA1-243ENST00000540387 E9PSI1 815 aa11.72□□□□□ -0.53
CTNNA1-243ENST00000540387 IRX3P78415 501 aaPredicted RBP11.72□□□□□ -0.53
CTNNA1-243ENST00000540387 RAB3GAP1Q15042 981 aa11.72□□□□□ -0.53
CTNNA1-243ENST00000540387 C14orf37Q86TY3 774 aa11.72□□□□□ -0.53
CTNNA1-243ENST00000540387 KNSTRNQ9Y448 316 aa11.72□□□□□ -0.53
CTNNA1-243ENST00000540387 CCDC61Q9Y6R9 512 aa11.72□□□□□ -0.53
CTNNA1-243ENST00000540387 ZNF335Q9H4Z2 1342 aaPredicted RBP11.71□□□□□ -0.53
CTNNA1-243ENST00000540387 CC2D1BQ5T0F9 858 aaKnown RBP11.71□□□□□ -0.54
CTNNA1-243ENST00000540387 ZNF771Q7L3S4 317 aaPredicted RBP11.71□□□□□ -0.54
CTNNA1-243ENST00000540387 RGS22Q8NE09 1264 aa11.71□□□□□ -0.54
CTNNA1-243ENST00000540387 CIZ1Q9ULV3 898 aaPredicted RBP11.71□□□□□ -0.54
CTNNA1-243ENST00000540387 BRD2P25440 801 aaKnown RBP11.7□□□□□ -0.54
CTNNA1-243ENST00000540387 KCNJ4P48050 445 aa11.7□□□□□ -0.54
CTNNA1-243ENST00000540387 SLC20A2Q08357 652 aa11.7□□□□□ -0.54
CTNNA1-243ENST00000540387 DMRT2Q9Y5R5 561 aa11.7□□□□□ -0.54
CTNNA1-243ENST00000540387 ZNF445P59923 1031 aa11.69□□□□□ -0.54
CTNNA1-243ENST00000540387 KLHL40Q2TBA0 621 aa11.69□□□□□ -0.54
CTNNA1-243ENST00000540387 GTF2F1P35269 517 aaKnown RBP eCLIP11.69□□□□□ -0.54
CTNNA1-243ENST00000540387 RBSNQ9H1K0 784 aa11.69□□□□□ -0.54
CTNNA1-243ENST00000540387 MYOM1P52179 1685 aa11.68□□□□□ -0.54
CTNNA1-243ENST00000540387 RBM25P49756 843 aaKnown RBP11.68□□□□□ -0.54
CTNNA1-243ENST00000540387 SMC5Q8IY18 1101 aa11.68□□□□□ -0.54
CTNNA1-243ENST00000540387 CLUAP1Q96AJ1 413 aa11.68□□□□□ -0.54
CTNNA1-243ENST00000540387 PRIMPOLQ96LW4 560 aa11.68□□□□□ -0.54
CTNNA1-243ENST00000540387 DNAJC2Q99543 621 aaKnown RBP11.68□□□□□ -0.54
CTNNA1-243ENST00000540387 CCDC39Q9UFE4 941 aa11.68□□□□□ -0.54
CTNNA1-243ENST00000540387 DDX49Q9Y6V7 483 aaKnown RBP11.68□□□□□ -0.54
CTNNA1-243ENST00000540387 TMEM94Q12767 1356 aa11.68□□□□□ -0.54
CTNNA1-243ENST00000540387 MFAP1P55081 439 aaKnown RBP11.68□□□□□ -0.54
CTNNA1-243ENST00000540387 TERF2IPQ9NYB0 399 aa11.68□□□□□ -0.54
CTNNA1-243ENST00000540387 A0A1W2PP64 1363 aa11.68□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms