RNA–Protein interactions for RNA: ENST00000537642.1

USP28-204, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 732 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-204ENST00000537642 OVOS2Q6IE36 1432 aa20.69■□□□□ 0.9
USP28-204ENST00000537642 CDCA8Q53HL2 280 aa20.68■□□□□ 0.9
USP28-204ENST00000537642 BARGINQ6ZT62 677 aa20.68■□□□□ 0.9
USP28-204ENST00000537642 CCDC125Q86Z20 511 aa20.68■□□□□ 0.9
USP28-204ENST00000537642 TCP11L2Q8N4U5 519 aa20.68■□□□□ 0.9
USP28-204ENST00000537642 BLMP54132 1417 aaPredicted RBP20.67■□□□□ 0.9
USP28-204ENST00000537642 CRB1P82279 1406 aa20.67■□□□□ 0.9
USP28-204ENST00000537642 MYOM1P52179 1685 aa20.67■□□□□ 0.9
USP28-204ENST00000537642 LTN1O94822 1766 aa20.66■□□□□ 0.9
USP28-204ENST00000537642 ABCC6O95255 1503 aa20.65■□□□□ 0.9
USP28-204ENST00000537642 FAM182BQ5T319 152 aa20.65■□□□□ 0.9
USP28-204ENST00000537642 THRAP3Q9Y2W1 955 aaKnown RBP20.65■□□□□ 0.9
USP28-204ENST00000537642 WDR17Q8IZU2 1322 aa20.64■□□□□ 0.89
USP28-204ENST00000537642 HSPA5P11021 654 aaKnown RBP20.63■□□□□ 0.89
USP28-204ENST00000537642 EIF4G2P78344 907 aaKnown RBP eCLIP20.63■□□□□ 0.89
USP28-204ENST00000537642 TOM1L2Q6ZVM7 507 aa20.63■□□□□ 0.89
USP28-204ENST00000537642 PARP4Q9UKK3 1724 aaKnown RBP20.61■□□□□ 0.89
USP28-204ENST00000537642 COG3Q96JB2 828 aa20.6■□□□□ 0.89
USP28-204ENST00000537642 WNK3Q9BYP7 1800 aa20.6■□□□□ 0.89
USP28-204ENST00000537642 FYB1O15117 783 aa20.59■□□□□ 0.89
USP28-204ENST00000537642 KIF20BQ96Q89 1820 aa20.58■□□□□ 0.89
USP28-204ENST00000537642 CSB-PGBD3P0DP91 1061 aa20.58■□□□□ 0.89
USP28-204ENST00000537642 SF3B2Q13435 895 aaKnown RBP20.58■□□□□ 0.89
USP28-204ENST00000537642 DEFB132Q7Z7B7 95 aa20.58■□□□□ 0.89
USP28-204ENST00000537642 CARD10Q9BWT7 1032 aa20.58■□□□□ 0.89
USP28-204ENST00000537642 CARD14Q9BXL6 1004 aa20.58■□□□□ 0.89
USP28-204ENST00000537642 RGPD1P0DJD0 1748 aa20.57■□□□□ 0.88
USP28-204ENST00000537642 PDE3BQ13370 1112 aa20.57■□□□□ 0.88
USP28-204ENST00000537642 GGNBP2Q9H3C7 697 aa20.57■□□□□ 0.88
USP28-204ENST00000537642 FBLN1P23142 703 aa20.56■□□□□ 0.88
USP28-204ENST00000537642 LRRC37A3O60309 1634 aa20.56■□□□□ 0.88
USP28-204ENST00000537642 ERBB3P21860 1342 aa20.55■□□□□ 0.88
USP28-204ENST00000537642 FAM196AQ6ZSG2 479 aa20.55■□□□□ 0.88
USP28-204ENST00000537642 NSD3Q9BZ95 1437 aa20.54■□□□□ 0.88
USP28-204ENST00000537642 TNS1Q9HBL0 1735 aaKnown RBP20.54■□□□□ 0.88
USP28-204ENST00000537642 ANKRD24Q8TF21 1146 aa20.54■□□□□ 0.88
USP28-204ENST00000537642 IP6K1Q92551 441 aa20.54■□□□□ 0.88
USP28-204ENST00000537642 POLR3GLQ9BT43 218 aa20.54■□□□□ 0.88
USP28-204ENST00000537642 MAP3K19Q56UN5 1328 aa20.53■□□□□ 0.88
USP28-204ENST00000537642 DISP2A7MBM2 1401 aa20.53■□□□□ 0.88
USP28-204ENST00000537642 CCDC7Q96M83 1385 aa20.53■□□□□ 0.88
USP28-204ENST00000537642 CDCA7Q9BWT1 371 aaPredicted RBP20.52■□□□□ 0.88
USP28-204ENST00000537642 BAG6P46379 1132 aa20.51■□□□□ 0.87
USP28-204ENST00000537642 DDB1Q16531 1140 aa20.51■□□□□ 0.87
USP28-204ENST00000537642 PEAK1Q9H792 1746 aa20.5■□□□□ 0.87
USP28-204ENST00000537642 TRIM37O94972 964 aa20.5■□□□□ 0.87
USP28-204ENST00000537642 NLRP2Q9NX02 1062 aa20.5■□□□□ 0.87
USP28-204ENST00000537642 C11orf95C9JLR9 678 aaPredicted RBP20.49■□□□□ 0.87
USP28-204ENST00000537642 HOXC9P31274 260 aa20.49■□□□□ 0.87
USP28-204ENST00000537642 RRS1Q15050 365 aaKnown RBP20.49■□□□□ 0.87
USP28-204ENST00000537642 AMPHP49418 695 aa20.48■□□□□ 0.87
USP28-204ENST00000537642 FAM208AQ9UK61 1670 aaKnown RBP20.48■□□□□ 0.87
USP28-204ENST00000537642 OVOS2A0A0G2JMS6 1433 aa20.47■□□□□ 0.87
USP28-204ENST00000537642 EN1Q05925 392 aaPredicted RBP20.47■□□□□ 0.87
USP28-204ENST00000537642 LTV1Q96GA3 475 aaPredicted RBP20.47■□□□□ 0.87
USP28-204ENST00000537642 RTL1A6NKG5 1358 aa20.46■□□□□ 0.87
USP28-204ENST00000537642 SBF2Q86WG5 1849 aa20.46■□□□□ 0.87
USP28-204ENST00000537642 MARCH10Q8NA82 808 aaPredicted RBP20.46■□□□□ 0.87
USP28-204ENST00000537642 RGPD2P0DJD1 1756 aa20.45■□□□□ 0.86
USP28-204ENST00000537642 CGNL1Q0VF96 1302 aa20.45■□□□□ 0.86
USP28-204ENST00000537642 TNS2Q63HR2 1409 aa20.44■□□□□ 0.86
USP28-204ENST00000537642 EXOC5O00471 708 aa20.44■□□□□ 0.86
USP28-204ENST00000537642 PANK3Q9H999 370 aa20.44■□□□□ 0.86
USP28-204ENST00000537642 APBA3O96018 575 aa20.43■□□□□ 0.86
USP28-204ENST00000537642 IL2RBP14784 551 aa20.43■□□□□ 0.86
USP28-204ENST00000537642 EZH2Q15910 746 aaKnown RBP20.42■□□□□ 0.86
USP28-204ENST00000537642 CAMKK2Q96RR4 588 aa20.42■□□□□ 0.86
USP28-204ENST00000537642 BCL9O00512 1426 aa20.42■□□□□ 0.86
USP28-204ENST00000537642 ANKRD26Q9UPS8 1709 aa20.41■□□□□ 0.86
USP28-204ENST00000537642 KIF24Q5T7B8 1368 aa20.4■□□□□ 0.86
USP28-204ENST00000537642 MAP2P11137 1827 aaKnown RBP20.39■□□□□ 0.86
USP28-204ENST00000537642 INSRP06213 1382 aa20.39■□□□□ 0.85
USP28-204ENST00000537642 FLT4P35916 1363 aa20.39■□□□□ 0.85
USP28-204ENST00000537642 KIF7Q2M1P5 1343 aa20.39■□□□□ 0.85
USP28-204ENST00000537642 HSP90AB2PQ58FF8 381 aa20.39■□□□□ 0.85
USP28-204ENST00000537642 EMILIN1Q9Y6C2 1016 aa20.39■□□□□ 0.85
USP28-204ENST00000537642 NBPF6Q5VWK0 638 aa20.37■□□□□ 0.85
USP28-204ENST00000537642 PTF1AQ7RTS3 328 aa20.37■□□□□ 0.85
USP28-204ENST00000537642 NBPF4Q96M43 638 aa20.37■□□□□ 0.85
USP28-204ENST00000537642 RREB1Q92766 1687 aa20.37■□□□□ 0.85
USP28-204ENST00000537642 SMG6Q86US8 1419 aaKnown RBP20.36■□□□□ 0.85
USP28-204ENST00000537642 PARD3Q8TEW0 1356 aa20.36■□□□□ 0.85
USP28-204ENST00000537642 BCL11BQ9C0K0 894 aaPredicted RBP20.36■□□□□ 0.85
USP28-204ENST00000537642 USHBP1Q8N6Y0 703 aa20.34■□□□□ 0.85
USP28-204ENST00000537642 NUP188Q5SRE5 1749 aa20.33■□□□□ 0.85
USP28-204ENST00000537642 MEGF6O75095 1541 aa20.33■□□□□ 0.85
USP28-204ENST00000537642 PPM1GO15355 546 aaPredicted RBP20.33■□□□□ 0.85
USP28-204ENST00000537642 TNNT2P45379 298 aaPredicted RBP20.33■□□□□ 0.85
USP28-204ENST00000537642 POLKQ9UBT6 870 aa20.33■□□□□ 0.85
USP28-204ENST00000537642 RGPD3A6NKT7 1758 aaPredicted RBP20.33■□□□□ 0.84
USP28-204ENST00000537642 RGPD4Q7Z3J3 1758 aa20.33■□□□□ 0.84
USP28-204ENST00000537642 NSD2O96028 1365 aa20.33■□□□□ 0.84
USP28-204ENST00000537642 KAT6BQ8WYB5 2073 aa20.32■□□□□ 0.84
USP28-204ENST00000537642 SHANK3Q9BYB0 1731 aa20.32■□□□□ 0.84
USP28-204ENST00000537642 NHSQ6T4R5 1651 aa20.32■□□□□ 0.84
USP28-204ENST00000537642 WASHC2AQ641Q2 1341 aa20.31■□□□□ 0.84
USP28-204ENST00000537642 PSDA5PKW4 1024 aaPredicted RBP20.31■□□□□ 0.84
USP28-204ENST00000537642 PLSCR1O15162 318 aa20.31■□□□□ 0.84
USP28-204ENST00000537642 KCNQ2O43526 872 aa20.31■□□□□ 0.84
USP28-204ENST00000537642 SRCAPQ6ZRS2 3230 aa20.31■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms