RNA–Protein interactions for RNA: ENST00000535399.1

SFSWAP-204, Transcript of splicing factor SWAP, humanhuman

TSL 2

Gene SFSWAP, Length 778 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-204ENST00000535399 COL5A2P05997 1499 aaPredicted RBP31.33■■■□□ 2.61
SFSWAP-204ENST00000535399 COL18A1P39060 1754 aa31.33■■■□□ 2.61
SFSWAP-204ENST00000535399 CGNL1Q0VF96 1302 aa31.33■■■□□ 2.61
SFSWAP-204ENST00000535399 LARP1Q6PKG0 1096 aaKnown RBP31.32■■■□□ 2.6
SFSWAP-204ENST00000535399 FBLN1P23142 703 aa31.3■■■□□ 2.6
SFSWAP-204ENST00000535399 SPATA31A1Q5TZJ5 1347 aa31.29■■■□□ 2.6
SFSWAP-204ENST00000535399 ONECUT3O60422 494 aaPredicted RBP31.29■■■□□ 2.6
SFSWAP-204ENST00000535399 ZEB1P37275 1124 aaPredicted RBP31.29■■■□□ 2.6
SFSWAP-204ENST00000535399 ABCC6O95255 1503 aa31.29■■■□□ 2.6
SFSWAP-204ENST00000535399 MAP3K19Q56UN5 1328 aa31.26■■■□□ 2.6
SFSWAP-204ENST00000535399 KIF20BQ96Q89 1820 aa31.26■■■□□ 2.6
SFSWAP-204ENST00000535399 FAM98CQ17RN3 349 aaKnown RBP31.25■■■□□ 2.59
SFSWAP-204ENST00000535399 SEPT12Q8IYM1 358 aa31.23■■■□□ 2.59
SFSWAP-204ENST00000535399 IP6K1Q92551 441 aa31.23■■■□□ 2.59
SFSWAP-204ENST00000535399 WDR17Q8IZU2 1322 aa31.23■■■□□ 2.59
SFSWAP-204ENST00000535399 RRS1Q15050 365 aaKnown RBP31.22■■■□□ 2.59
SFSWAP-204ENST00000535399 CRB1P82279 1406 aa31.22■■■□□ 2.59
SFSWAP-204ENST00000535399 USP35Q9P2H5 1018 aa31.21■■■□□ 2.59
SFSWAP-204ENST00000535399 KNSTRNQ9Y448 316 aa31.21■■■□□ 2.59
SFSWAP-204ENST00000535399 TCP11L2Q8N4U5 519 aa31.2■■■□□ 2.59
SFSWAP-204ENST00000535399 PER1O15534 1290 aaPredicted RBP31.19■■■□□ 2.58
SFSWAP-204ENST00000535399 NSD2O96028 1365 aa31.18■■■□□ 2.58
SFSWAP-204ENST00000535399 LTN1O94822 1766 aa31.18■■■□□ 2.58
SFSWAP-204ENST00000535399 HOXC9P31274 260 aa31.18■■■□□ 2.58
SFSWAP-204ENST00000535399 AMER1Q5JTC6 1135 aaPredicted RBP31.18■■■□□ 2.58
SFSWAP-204ENST00000535399 BARGINQ6ZT62 677 aa31.18■■■□□ 2.58
SFSWAP-204ENST00000535399 TOM1L2Q6ZVM7 507 aa31.18■■■□□ 2.58
SFSWAP-204ENST00000535399 ERBB3P21860 1342 aa31.18■■■□□ 2.58
SFSWAP-204ENST00000535399 BLMP54132 1417 aaPredicted RBP31.17■■■□□ 2.58
SFSWAP-204ENST00000535399 CSB-PGBD3P0DP91 1061 aa31.17■■■□□ 2.58
SFSWAP-204ENST00000535399 AMPHP49418 695 aa31.17■■■□□ 2.58
SFSWAP-204ENST00000535399 THRAP3Q9Y2W1 955 aaKnown RBP31.17■■■□□ 2.58
SFSWAP-204ENST00000535399 ANKRD24Q8TF21 1146 aa31.16■■■□□ 2.58
SFSWAP-204ENST00000535399 RTL1A6NKG5 1358 aa31.16■■■□□ 2.58
SFSWAP-204ENST00000535399 RGPD5Q99666 1765 aa31.15■■■□□ 2.58
SFSWAP-204ENST00000535399 A0A0G2JS52 829 aa31.14■■■□□ 2.58
SFSWAP-204ENST00000535399 MYT1Q01538 1121 aa31.14■■■□□ 2.58
SFSWAP-204ENST00000535399 CARD10Q9BWT7 1032 aa31.14■■■□□ 2.58
SFSWAP-204ENST00000535399 THSD7AQ9UPZ6 1657 aa31.13■■■□□ 2.57
SFSWAP-204ENST00000535399 KIF24Q5T7B8 1368 aa31.11■■■□□ 2.57
SFSWAP-204ENST00000535399 EMILIN1Q9Y6C2 1016 aa31.11■■■□□ 2.57
SFSWAP-204ENST00000535399 TNNT2P45379 298 aaPredicted RBP31.09■■■□□ 2.57
SFSWAP-204ENST00000535399 MORC1Q86VD1 984 aa31.09■■■□□ 2.57
SFSWAP-204ENST00000535399 LTV1Q96GA3 475 aaPredicted RBP31.09■■■□□ 2.57
SFSWAP-204ENST00000535399 ANKRD26Q9UPS8 1709 aa31.09■■■□□ 2.57
SFSWAP-204ENST00000535399 FLT4P35916 1363 aa31.08■■■□□ 2.57
SFSWAP-204ENST00000535399 KRT27Q7Z3Y8 459 aa31.08■■■□□ 2.57
SFSWAP-204ENST00000535399 NLRP2Q9NX02 1062 aa31.08■■■□□ 2.57
SFSWAP-204ENST00000535399 POLKQ9UBT6 870 aa31.08■■■□□ 2.57
SFSWAP-204ENST00000535399 HSP90AB2PQ58FF8 381 aa31.07■■■□□ 2.56
SFSWAP-204ENST00000535399 UPF1Q92900 1129 aaKnown RBP eCLIP31.06■■■□□ 2.56
SFSWAP-204ENST00000535399 PEAK1Q9H792 1746 aa31.06■■■□□ 2.56
SFSWAP-204ENST00000535399 INSRP06213 1382 aa31.05■■■□□ 2.56
SFSWAP-204ENST00000535399 BRWD3Q6RI45 1802 aa31.04■■■□□ 2.56
SFSWAP-204ENST00000535399 NPC1L1Q9UHC9 1359 aa31.04■■■□□ 2.56
SFSWAP-204ENST00000535399 DISP2A7MBM2 1401 aa31.03■■■□□ 2.56
SFSWAP-204ENST00000535399 PPM1GO15355 546 aaPredicted RBP31.02■■■□□ 2.56
SFSWAP-204ENST00000535399 CC2D1BQ5T0F9 858 aaKnown RBP31.01■■■□□ 2.55
SFSWAP-204ENST00000535399 CDCA7Q9BWT1 371 aaPredicted RBP31■■■□□ 2.55
SFSWAP-204ENST00000535399 SMG6Q86US8 1419 aaKnown RBP30.98■■■□□ 2.55
SFSWAP-204ENST00000535399 PDE3BQ13370 1112 aa30.96■■■□□ 2.55
SFSWAP-204ENST00000535399 FAM182BQ5T319 152 aa30.96■■■□□ 2.55
SFSWAP-204ENST00000535399 NBPF6Q5VWK0 638 aa30.96■■■□□ 2.55
SFSWAP-204ENST00000535399 NBPF4Q96M43 638 aa30.96■■■□□ 2.55
SFSWAP-204ENST00000535399 EP400Q96L91 3159 aa30.96■■■□□ 2.55
SFSWAP-204ENST00000535399 PARP4Q9UKK3 1724 aaKnown RBP30.95■■■□□ 2.54
SFSWAP-204ENST00000535399 FAM208AQ9UK61 1670 aaKnown RBP30.94■■■□□ 2.54
SFSWAP-204ENST00000535399 MAP2P11137 1827 aaKnown RBP30.94■■■□□ 2.54
SFSWAP-204ENST00000535399 DDB1Q16531 1140 aa30.94■■■□□ 2.54
SFSWAP-204ENST00000535399 IL2RBP14784 551 aa30.93■■■□□ 2.54
SFSWAP-204ENST00000535399 WNK3Q9BYP7 1800 aa30.91■■■□□ 2.54
SFSWAP-204ENST00000535399 CNGB1Q14028 1251 aaPredicted RBP30.91■■■□□ 2.54
SFSWAP-204ENST00000535399 LRRC37A3O60309 1634 aa30.91■■■□□ 2.54
SFSWAP-204ENST00000535399 EIF4A2Q14240 407 aaKnown RBP30.89■■■□□ 2.54
SFSWAP-204ENST00000535399 USHBP1Q8N6Y0 703 aa30.89■■■□□ 2.54
SFSWAP-204ENST00000535399 EXOC5O00471 708 aa30.88■■■□□ 2.53
SFSWAP-204ENST00000535399 FAM196AQ6ZSG2 479 aa30.87■■■□□ 2.53
SFSWAP-204ENST00000535399 TNS2Q63HR2 1409 aa30.87■■■□□ 2.53
SFSWAP-204ENST00000535399 MARCH10Q8NA82 808 aaPredicted RBP30.86■■■□□ 2.53
SFSWAP-204ENST00000535399 MTHFSP49914 203 aa30.85■■■□□ 2.53
SFSWAP-204ENST00000535399 DDX10Q13206 875 aaKnown RBP30.85■■■□□ 2.53
SFSWAP-204ENST00000535399 CCDC125Q86Z20 511 aa30.85■■■□□ 2.53
SFSWAP-204ENST00000535399 EYA1Q99502 592 aa30.85■■■□□ 2.53
SFSWAP-204ENST00000535399 RGPD2P0DJD1 1756 aa30.84■■■□□ 2.53
SFSWAP-204ENST00000535399 NCAPD2Q15021 1401 aa30.84■■■□□ 2.53
SFSWAP-204ENST00000535399 MEGF6O75095 1541 aa30.83■■■□□ 2.53
SFSWAP-204ENST00000535399 OVOS2A0A0G2JMS6 1433 aa30.81■■■□□ 2.52
SFSWAP-204ENST00000535399 RAPGEF4Q8WZA2 1011 aa30.79■■■□□ 2.52
SFSWAP-204ENST00000535399 IGSF1Q8N6C5 1336 aa30.77■■■□□ 2.52
SFSWAP-204ENST00000535399 BCL9O00512 1426 aa30.77■■■□□ 2.52
SFSWAP-204ENST00000535399 IL13P35225 146 aa30.77■■■□□ 2.52
SFSWAP-204ENST00000535399 TRIM37O94972 964 aa30.76■■■□□ 2.51
SFSWAP-204ENST00000535399 TATP17735 454 aaPredicted RBP30.76■■■□□ 2.51
SFSWAP-204ENST00000535399 ZCRB1Q8TBF4 217 aaKnown RBP30.75■■■□□ 2.51
SFSWAP-204ENST00000535399 PPP2R1AP30153 589 aa30.73■■■□□ 2.51
SFSWAP-204ENST00000535399 SF3B2Q13435 895 aaKnown RBP30.73■■■□□ 2.51
SFSWAP-204ENST00000535399 DDX54Q8TDD1 881 aaKnown RBP30.72■■■□□ 2.51
SFSWAP-204ENST00000535399 PARD3Q8TEW0 1356 aa30.71■■■□□ 2.51
SFSWAP-204ENST00000535399 ZNF316A6NFI3 1004 aaPredicted RBP30.71■■■□□ 2.51
SFSWAP-204ENST00000535399 DEFB132Q7Z7B7 95 aa30.71■■■□□ 2.51
Retrieved 100 of 20,778 RNA–protein pairs in 66.4 ms