RNA–Protein interactions for RNA: ENST00000535313.1

CLSTN3-204, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 787 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-204ENST00000535313 COL18A1P39060 1754 aa22.81■■□□□ 1.24
CLSTN3-204ENST00000535313 CD163L1Q9NR16 1453 aa22.81■■□□□ 1.24
CLSTN3-204ENST00000535313 CSB-PGBD3P0DP91 1061 aa22.81■■□□□ 1.24
CLSTN3-204ENST00000535313 USP31Q70CQ4 1352 aa22.8■■□□□ 1.24
CLSTN3-204ENST00000535313 APBA3O96018 575 aa22.8■■□□□ 1.24
CLSTN3-204ENST00000535313 NME9Q86XW9 330 aa22.8■■□□□ 1.24
CLSTN3-204ENST00000535313 TNS1Q9HBL0 1735 aaKnown RBP22.79■■□□□ 1.24
CLSTN3-204ENST00000535313 NFAT5O94916 1531 aa22.79■■□□□ 1.24
CLSTN3-204ENST00000535313 C11orf95C9JLR9 678 aaPredicted RBP22.79■■□□□ 1.24
CLSTN3-204ENST00000535313 TESK2Q96S53 571 aa22.79■■□□□ 1.24
CLSTN3-204ENST00000535313 PARP4Q9UKK3 1724 aaKnown RBP22.79■■□□□ 1.24
CLSTN3-204ENST00000535313 EZH2Q15910 746 aaKnown RBP22.78■■□□□ 1.24
CLSTN3-204ENST00000535313 EDC4Q6P2E9 1401 aaKnown RBP22.78■■□□□ 1.24
CLSTN3-204ENST00000535313 PSDA5PKW4 1024 aaPredicted RBP22.77■■□□□ 1.24
CLSTN3-204ENST00000535313 DDB1Q16531 1140 aa22.77■■□□□ 1.24
CLSTN3-204ENST00000535313 CDCA7Q9BWT1 371 aaPredicted RBP22.77■■□□□ 1.24
CLSTN3-204ENST00000535313 A0A1W2PP64 1363 aa22.76■■□□□ 1.23
CLSTN3-204ENST00000535313 NINLQ9Y2I6 1382 aa22.76■■□□□ 1.23
CLSTN3-204ENST00000535313 CAMKK2Q96RR4 588 aa22.76■■□□□ 1.23
CLSTN3-204ENST00000535313 CARD10Q9BWT7 1032 aa22.76■■□□□ 1.23
CLSTN3-204ENST00000535313 PARD3Q8TEW0 1356 aa22.75■■□□□ 1.23
CLSTN3-204ENST00000535313 ABCC6O95255 1503 aa22.74■■□□□ 1.23
CLSTN3-204ENST00000535313 OVOS2A0A0G2JMS6 1433 aa22.74■■□□□ 1.23
CLSTN3-204ENST00000535313 OVOS2A0A0J9YW53 1432 aa22.74■■□□□ 1.23
CLSTN3-204ENST00000535313 OVOS2Q6IE36 1432 aa22.74■■□□□ 1.23
CLSTN3-204ENST00000535313 USP54Q70EL1 1684 aa22.73■■□□□ 1.23
CLSTN3-204ENST00000535313 RGPD5Q99666 1765 aa22.73■■□□□ 1.23
CLSTN3-204ENST00000535313 USP47Q96K76 1375 aa22.71■■□□□ 1.23
CLSTN3-204ENST00000535313 CCDC7Q96M83 1385 aa22.71■■□□□ 1.23
CLSTN3-204ENST00000535313 LRRC37A3O60309 1634 aa22.71■■□□□ 1.23
CLSTN3-204ENST00000535313 TMF1P82094 1093 aa22.7■■□□□ 1.22
CLSTN3-204ENST00000535313 R3HDM1Q15032 1099 aaKnown RBP22.7■■□□□ 1.22
CLSTN3-204ENST00000535313 PCGF6Q9BYE7 350 aa22.69■■□□□ 1.22
CLSTN3-204ENST00000535313 TIMELESSQ9UNS1 1208 aa22.68■■□□□ 1.22
CLSTN3-204ENST00000535313 ERBB3P21860 1342 aa22.67■■□□□ 1.22
CLSTN3-204ENST00000535313 WNK3Q9BYP7 1800 aa22.67■■□□□ 1.22
CLSTN3-204ENST00000535313 EXOC5O00471 708 aa22.67■■□□□ 1.22
CLSTN3-204ENST00000535313 MARCH10Q8NA82 808 aaPredicted RBP22.67■■□□□ 1.22
CLSTN3-204ENST00000535313 NLRP2Q9NX02 1062 aa22.67■■□□□ 1.22
CLSTN3-204ENST00000535313 CLSPNQ9HAW4 1339 aa22.66■■□□□ 1.22
CLSTN3-204ENST00000535313 NBPF14Q5TI25 921 aa22.66■■□□□ 1.22
CLSTN3-204ENST00000535313 COG3Q96JB2 828 aa22.66■■□□□ 1.22
CLSTN3-204ENST00000535313 LTN1O94822 1766 aa22.66■■□□□ 1.22
CLSTN3-204ENST00000535313 PEAK1Q9H792 1746 aa22.65■■□□□ 1.22
CLSTN3-204ENST00000535313 CDCA8Q53HL2 280 aa22.65■■□□□ 1.22
CLSTN3-204ENST00000535313 ANKRD24Q8TF21 1146 aa22.65■■□□□ 1.22
CLSTN3-204ENST00000535313 LRP5O75197 1615 aa22.64■■□□□ 1.22
CLSTN3-204ENST00000535313 ANKRD36BQ8N2N9 1353 aa22.64■■□□□ 1.22
CLSTN3-204ENST00000535313 BCL11BQ9C0K0 894 aaPredicted RBP22.64■■□□□ 1.21
CLSTN3-204ENST00000535313 BCL9O00512 1426 aa22.62■■□□□ 1.21
CLSTN3-204ENST00000535313 RREB1Q92766 1687 aa22.62■■□□□ 1.21
CLSTN3-204ENST00000535313 IP6K1Q92551 441 aa22.61■■□□□ 1.21
CLSTN3-204ENST00000535313 TNS2Q63HR2 1409 aa22.6■■□□□ 1.21
CLSTN3-204ENST00000535313 PLSCR1O15162 318 aa22.6■■□□□ 1.21
CLSTN3-204ENST00000535313 IL2RBP14784 551 aa22.6■■□□□ 1.21
CLSTN3-204ENST00000535313 SBF2Q86WG5 1849 aa22.59■■□□□ 1.21
CLSTN3-204ENST00000535313 NUP188Q5SRE5 1749 aa22.58■■□□□ 1.21
CLSTN3-204ENST00000535313 AMPHP49418 695 aa22.58■■□□□ 1.21
CLSTN3-204ENST00000535313 LTV1Q96GA3 475 aaPredicted RBP22.58■■□□□ 1.21
CLSTN3-204ENST00000535313 PTF1AQ7RTS3 328 aa22.57■■□□□ 1.2
CLSTN3-204ENST00000535313 MAP3K19Q56UN5 1328 aa22.57■■□□□ 1.2
CLSTN3-204ENST00000535313 FYB1O15117 783 aa22.55■■□□□ 1.2
CLSTN3-204ENST00000535313 RGPD3A6NKT7 1758 aaPredicted RBP22.55■■□□□ 1.2
CLSTN3-204ENST00000535313 RGPD4Q7Z3J3 1758 aa22.55■■□□□ 1.2
CLSTN3-204ENST00000535313 HOXC9P31274 260 aa22.54■■□□□ 1.2
CLSTN3-204ENST00000535313 GGNBP2Q9H3C7 697 aa22.54■■□□□ 1.2
CLSTN3-204ENST00000535313 FBLN1P23142 703 aa22.53■■□□□ 1.2
CLSTN3-204ENST00000535313 FAM208AQ9UK61 1670 aaKnown RBP22.5■■□□□ 1.19
CLSTN3-204ENST00000535313 KCNQ2O43526 872 aa22.5■■□□□ 1.19
CLSTN3-204ENST00000535313 RRS1Q15050 365 aaKnown RBP22.5■■□□□ 1.19
CLSTN3-204ENST00000535313 ACSBG1Q96GR2 724 aa22.5■■□□□ 1.19
CLSTN3-204ENST00000535313 RTL1A6NKG5 1358 aa22.5■■□□□ 1.19
CLSTN3-204ENST00000535313 PROM2Q8N271 834 aa22.49■■□□□ 1.19
CLSTN3-204ENST00000535313 CCER1Q8TC90 406 aaPredicted RBP22.49■■□□□ 1.19
CLSTN3-204ENST00000535313 TXNRD1Q16881 649 aa22.48■■□□□ 1.19
CLSTN3-204ENST00000535313 DDX54Q8TDD1 881 aaKnown RBP22.47■■□□□ 1.19
CLSTN3-204ENST00000535313 CARD14Q9BXL6 1004 aa22.46■■□□□ 1.19
CLSTN3-204ENST00000535313 ANO8Q9HCE9 1232 aaPredicted RBP22.46■■□□□ 1.19
CLSTN3-204ENST00000535313 NHSQ6T4R5 1651 aa22.46■■□□□ 1.19
CLSTN3-204ENST00000535313 SPON1Q9HCB6 807 aa22.45■■□□□ 1.18
CLSTN3-204ENST00000535313 SMG6Q86US8 1419 aaKnown RBP22.45■■□□□ 1.18
CLSTN3-204ENST00000535313 NSD3Q9BZ95 1437 aa22.45■■□□□ 1.18
CLSTN3-204ENST00000535313 KIF20BQ96Q89 1820 aa22.44■■□□□ 1.18
CLSTN3-204ENST00000535313 STK32BQ9NY57 414 aa22.44■■□□□ 1.18
CLSTN3-204ENST00000535313 KAT6BQ8WYB5 2073 aa22.43■■□□□ 1.18
CLSTN3-204ENST00000535313 POLR3GLQ9BT43 218 aa22.43■■□□□ 1.18
CLSTN3-204ENST00000535313 MYOM1P52179 1685 aa22.42■■□□□ 1.18
CLSTN3-204ENST00000535313 EIF4G2P78344 907 aaKnown RBP eCLIP22.41■■□□□ 1.18
CLSTN3-204ENST00000535313 NBPF6Q5VWK0 638 aa22.41■■□□□ 1.18
CLSTN3-204ENST00000535313 ZCRB1Q8TBF4 217 aaKnown RBP22.41■■□□□ 1.18
CLSTN3-204ENST00000535313 NBPF4Q96M43 638 aa22.41■■□□□ 1.18
CLSTN3-204ENST00000535313 PPP1R1BQ9UD71 204 aaPredicted RBP22.41■■□□□ 1.18
CLSTN3-204ENST00000535313 FLT4P35916 1363 aa22.4■■□□□ 1.18
CLSTN3-204ENST00000535313 KIF24Q5T7B8 1368 aa22.4■■□□□ 1.18
CLSTN3-204ENST00000535313 HSP90AB2PQ58FF8 381 aa22.4■■□□□ 1.18
CLSTN3-204ENST00000535313 INSRP06213 1382 aa22.39■■□□□ 1.18
CLSTN3-204ENST00000535313 RAPGEF4Q8WZA2 1011 aa22.39■■□□□ 1.17
CLSTN3-204ENST00000535313 RGPD2P0DJD1 1756 aa22.38■■□□□ 1.17
CLSTN3-204ENST00000535313 CGNL1Q0VF96 1302 aa22.38■■□□□ 1.17
CLSTN3-204ENST00000535313 SLC15A2Q16348 729 aa22.38■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 109.4 ms