RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 GGNBP2Q9H3C7 697 aa17.98■□□□□ 0.47
VPS28-216ENST00000533806 ABCC6O95255 1503 aa17.98■□□□□ 0.47
VPS28-216ENST00000533806 FAM98CQ17RN3 349 aaKnown RBP17.97■□□□□ 0.47
VPS28-216ENST00000533806 FBLN1P23142 703 aa17.96■□□□□ 0.47
VPS28-216ENST00000533806 BARGINQ6ZT62 677 aa17.96■□□□□ 0.47
VPS28-216ENST00000533806 POLR3GLQ9BT43 218 aa17.96■□□□□ 0.47
VPS28-216ENST00000533806 PANK3Q9H999 370 aa17.96■□□□□ 0.47
VPS28-216ENST00000533806 EP400Q96L91 3159 aa17.96■□□□□ 0.47
VPS28-216ENST00000533806 ZBTB7CA1YPR0 619 aa17.95■□□□□ 0.46
VPS28-216ENST00000533806 UPF1Q92900 1129 aaKnown RBP eCLIP17.95■□□□□ 0.46
VPS28-216ENST00000533806 CRB1P82279 1406 aa17.95■□□□□ 0.46
VPS28-216ENST00000533806 WDR17Q8IZU2 1322 aa17.95■□□□□ 0.46
VPS28-216ENST00000533806 THRAP3Q9Y2W1 955 aaKnown RBP17.94■□□□□ 0.46
VPS28-216ENST00000533806 CGNL1Q0VF96 1302 aa17.94■□□□□ 0.46
VPS28-216ENST00000533806 TCP11L2Q8N4U5 519 aa17.93■□□□□ 0.46
VPS28-216ENST00000533806 IP6K1Q92551 441 aa17.93■□□□□ 0.46
VPS28-216ENST00000533806 MAP3K19Q56UN5 1328 aa17.93■□□□□ 0.46
VPS28-216ENST00000533806 WASHC2AQ641Q2 1341 aa17.93■□□□□ 0.46
VPS28-216ENST00000533806 THSD7AQ9UPZ6 1657 aa17.93■□□□□ 0.46
VPS28-216ENST00000533806 CCDC7Q96M83 1385 aa17.91■□□□□ 0.46
VPS28-216ENST00000533806 USP35Q9P2H5 1018 aa17.91■□□□□ 0.46
VPS28-216ENST00000533806 ERBB3P21860 1342 aa17.91■□□□□ 0.46
VPS28-216ENST00000533806 KRT27Q7Z3Y8 459 aa17.9■□□□□ 0.46
VPS28-216ENST00000533806 CARD10Q9BWT7 1032 aa17.9■□□□□ 0.46
VPS28-216ENST00000533806 BLMP54132 1417 aaPredicted RBP17.89■□□□□ 0.46
VPS28-216ENST00000533806 PER1O15534 1290 aaPredicted RBP17.89■□□□□ 0.45
VPS28-216ENST00000533806 HOXC9P31274 260 aa17.89■□□□□ 0.45
VPS28-216ENST00000533806 TOM1L2Q6ZVM7 507 aa17.89■□□□□ 0.45
VPS28-216ENST00000533806 RRS1Q15050 365 aaKnown RBP17.88■□□□□ 0.45
VPS28-216ENST00000533806 ANKRD24Q8TF21 1146 aa17.88■□□□□ 0.45
VPS28-216ENST00000533806 LTN1O94822 1766 aa17.87■□□□□ 0.45
VPS28-216ENST00000533806 BRWD3Q6RI45 1802 aa17.87■□□□□ 0.45
VPS28-216ENST00000533806 KIF20BQ96Q89 1820 aa17.87■□□□□ 0.45
VPS28-216ENST00000533806 RTL1A6NKG5 1358 aa17.87■□□□□ 0.45
VPS28-216ENST00000533806 RGPD5Q99666 1765 aa17.86■□□□□ 0.45
VPS28-216ENST00000533806 AMER1Q5JTC6 1135 aaPredicted RBP17.86■□□□□ 0.45
VPS28-216ENST00000533806 KIF24Q5T7B8 1368 aa17.86■□□□□ 0.45
VPS28-216ENST00000533806 DISP2A7MBM2 1401 aa17.86■□□□□ 0.45
VPS28-216ENST00000533806 NSD2O96028 1365 aa17.85■□□□□ 0.45
VPS28-216ENST00000533806 CSB-PGBD3P0DP91 1061 aa17.85■□□□□ 0.45
VPS28-216ENST00000533806 AMPHP49418 695 aa17.85■□□□□ 0.45
VPS28-216ENST00000533806 A0A0G2JS52 829 aa17.84■□□□□ 0.45
VPS28-216ENST00000533806 MYT1Q01538 1121 aa17.84■□□□□ 0.45
VPS28-216ENST00000533806 CDCA7Q9BWT1 371 aaPredicted RBP17.83■□□□□ 0.44
VPS28-216ENST00000533806 POLKQ9UBT6 870 aa17.83■□□□□ 0.44
VPS28-216ENST00000533806 KNSTRNQ9Y448 316 aa17.83■□□□□ 0.44
VPS28-216ENST00000533806 EMILIN1Q9Y6C2 1016 aa17.83■□□□□ 0.44
VPS28-216ENST00000533806 INSRP06213 1382 aa17.82■□□□□ 0.44
VPS28-216ENST00000533806 HSP90AB2PQ58FF8 381 aa17.82■□□□□ 0.44
VPS28-216ENST00000533806 FAM182BQ5T319 152 aa17.82■□□□□ 0.44
VPS28-216ENST00000533806 CCDC125Q86Z20 511 aa17.82■□□□□ 0.44
VPS28-216ENST00000533806 NLRP2Q9NX02 1062 aa17.82■□□□□ 0.44
VPS28-216ENST00000533806 PEAK1Q9H792 1746 aa17.81■□□□□ 0.44
VPS28-216ENST00000533806 FLT4P35916 1363 aa17.81■□□□□ 0.44
VPS28-216ENST00000533806 PARP4Q9UKK3 1724 aaKnown RBP17.81■□□□□ 0.44
VPS28-216ENST00000533806 LTV1Q96GA3 475 aaPredicted RBP17.79■□□□□ 0.44
VPS28-216ENST00000533806 ANKRD26Q9UPS8 1709 aa17.78■□□□□ 0.44
VPS28-216ENST00000533806 PDE3BQ13370 1112 aa17.78■□□□□ 0.44
VPS28-216ENST00000533806 NBPF6Q5VWK0 638 aa17.78■□□□□ 0.44
VPS28-216ENST00000533806 NBPF4Q96M43 638 aa17.78■□□□□ 0.44
VPS28-216ENST00000533806 NPC1L1Q9UHC9 1359 aa17.78■□□□□ 0.44
VPS28-216ENST00000533806 TNNT2P45379 298 aaPredicted RBP17.77■□□□□ 0.44
VPS28-216ENST00000533806 DDB1Q16531 1140 aa17.77■□□□□ 0.44
VPS28-216ENST00000533806 FAM196AQ6ZSG2 479 aa17.77■□□□□ 0.44
VPS28-216ENST00000533806 MORC1Q86VD1 984 aa17.77■□□□□ 0.44
VPS28-216ENST00000533806 SMG6Q86US8 1419 aaKnown RBP17.77■□□□□ 0.44
VPS28-216ENST00000533806 LRRC37A3O60309 1634 aa17.76■□□□□ 0.43
VPS28-216ENST00000533806 IL2RBP14784 551 aa17.76■□□□□ 0.43
VPS28-216ENST00000533806 MARCH10Q8NA82 808 aaPredicted RBP17.76■□□□□ 0.43
VPS28-216ENST00000533806 WNK3Q9BYP7 1800 aa17.75■□□□□ 0.43
VPS28-216ENST00000533806 FAM208AQ9UK61 1670 aaKnown RBP17.74■□□□□ 0.43
VPS28-216ENST00000533806 BCL9O00512 1426 aa17.74■□□□□ 0.43
VPS28-216ENST00000533806 EXOC5O00471 708 aa17.74■□□□□ 0.43
VPS28-216ENST00000533806 ZEB1P37275 1124 aaPredicted RBP17.74■□□□□ 0.43
VPS28-216ENST00000533806 NCAPD2Q15021 1401 aa17.73■□□□□ 0.43
VPS28-216ENST00000533806 PPM1GO15355 546 aaPredicted RBP17.73■□□□□ 0.43
VPS28-216ENST00000533806 TNS2Q63HR2 1409 aa17.72■□□□□ 0.43
VPS28-216ENST00000533806 OVOS2A0A0G2JMS6 1433 aa17.72■□□□□ 0.43
VPS28-216ENST00000533806 MAP2P11137 1827 aaKnown RBP17.71■□□□□ 0.43
VPS28-216ENST00000533806 EIF4A2Q14240 407 aaKnown RBP17.7■□□□□ 0.42
VPS28-216ENST00000533806 CC2D1BQ5T0F9 858 aaKnown RBP17.7■□□□□ 0.42
VPS28-216ENST00000533806 USHBP1Q8N6Y0 703 aa17.7■□□□□ 0.42
VPS28-216ENST00000533806 EYA1Q99502 592 aa17.7■□□□□ 0.42
VPS28-216ENST00000533806 MEGF6O75095 1541 aa17.69■□□□□ 0.42
VPS28-216ENST00000533806 TRIM37O94972 964 aa17.69■□□□□ 0.42
VPS28-216ENST00000533806 DEFB132Q7Z7B7 95 aa17.69■□□□□ 0.42
VPS28-216ENST00000533806 RGPD2P0DJD1 1756 aa17.68■□□□□ 0.42
VPS28-216ENST00000533806 MTHFSP49914 203 aa17.66■□□□□ 0.42
VPS28-216ENST00000533806 SF3B2Q13435 895 aaKnown RBP17.66■□□□□ 0.42
VPS28-216ENST00000533806 PTF1AQ7RTS3 328 aa17.66■□□□□ 0.42
VPS28-216ENST00000533806 IGSF1Q8N6C5 1336 aa17.66■□□□□ 0.42
VPS28-216ENST00000533806 ZCRB1Q8TBF4 217 aaKnown RBP17.65■□□□□ 0.42
VPS28-216ENST00000533806 RAPGEF4Q8WZA2 1011 aa17.65■□□□□ 0.42
VPS28-216ENST00000533806 CAMKK2Q96RR4 588 aa17.65■□□□□ 0.42
VPS28-216ENST00000533806 RGPD1P0DJD0 1748 aa17.64■□□□□ 0.41
VPS28-216ENST00000533806 TNS1Q9HBL0 1735 aaKnown RBP17.64■□□□□ 0.41
VPS28-216ENST00000533806 IL13P35225 146 aa17.64■□□□□ 0.41
VPS28-216ENST00000533806 BAG6P46379 1132 aa17.64■□□□□ 0.41
VPS28-216ENST00000533806 BCL11BQ9C0K0 894 aaPredicted RBP17.64■□□□□ 0.41
VPS28-216ENST00000533806 TATP17735 454 aaPredicted RBP17.63■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms