RNA–Protein interactions for RNA: ENST00000526734.5

VPS28-206, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 570 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-206ENST00000526734 COL18A1P39060 1754 aa28.79■■■□□ 2.2
VPS28-206ENST00000526734 OVOS2A0A0J9YW53 1432 aa28.78■■■□□ 2.2
VPS28-206ENST00000526734 OVOS2Q6IE36 1432 aa28.78■■■□□ 2.2
VPS28-206ENST00000526734 SOX12O15370 315 aa28.76■■■□□ 2.19
VPS28-206ENST00000526734 USP35Q9P2H5 1018 aa28.76■■■□□ 2.19
VPS28-206ENST00000526734 WDR17Q8IZU2 1322 aa28.75■■■□□ 2.19
VPS28-206ENST00000526734 SF3B2Q13435 895 aaKnown RBP28.75■■■□□ 2.19
VPS28-206ENST00000526734 ZRANB1Q9UGI0 708 aa28.74■■■□□ 2.19
VPS28-206ENST00000526734 EIF4G2P78344 907 aaKnown RBP eCLIP28.72■■■□□ 2.19
VPS28-206ENST00000526734 TOM1L2Q6ZVM7 507 aa28.72■■■□□ 2.19
VPS28-206ENST00000526734 AXIN2Q9Y2T1 843 aa28.72■■■□□ 2.19
VPS28-206ENST00000526734 EP400Q96L91 3159 aa28.72■■■□□ 2.19
VPS28-206ENST00000526734 COG3Q96JB2 828 aa28.7■■■□□ 2.18
VPS28-206ENST00000526734 PDE3BQ13370 1112 aa28.68■■■□□ 2.18
VPS28-206ENST00000526734 CDCA7Q9BWT1 371 aaPredicted RBP28.68■■■□□ 2.18
VPS28-206ENST00000526734 PARP4Q9UKK3 1724 aaKnown RBP28.67■■■□□ 2.18
VPS28-206ENST00000526734 C11orf95C9JLR9 678 aaPredicted RBP28.67■■■□□ 2.18
VPS28-206ENST00000526734 CSB-PGBD3P0DP91 1061 aa28.67■■■□□ 2.18
VPS28-206ENST00000526734 FAM196AQ6ZSG2 479 aa28.67■■■□□ 2.18
VPS28-206ENST00000526734 CARD10Q9BWT7 1032 aa28.67■■■□□ 2.18
VPS28-206ENST00000526734 CCDC7Q96M83 1385 aa28.65■■■□□ 2.18
VPS28-206ENST00000526734 MYOM1P52179 1685 aa28.64■■■□□ 2.17
VPS28-206ENST00000526734 BAG6P46379 1132 aa28.63■■■□□ 2.17
VPS28-206ENST00000526734 ERBB3P21860 1342 aa28.63■■■□□ 2.17
VPS28-206ENST00000526734 RGPD1P0DJD0 1748 aa28.63■■■□□ 2.17
VPS28-206ENST00000526734 LTN1O94822 1766 aa28.62■■■□□ 2.17
VPS28-206ENST00000526734 HSPA5P11021 654 aaKnown RBP28.62■■■□□ 2.17
VPS28-206ENST00000526734 FYB1O15117 783 aa28.6■■■□□ 2.17
VPS28-206ENST00000526734 RGPD5Q99666 1765 aa28.6■■■□□ 2.17
VPS28-206ENST00000526734 DISP2A7MBM2 1401 aa28.6■■■□□ 2.17
VPS28-206ENST00000526734 FAM182BQ5T319 152 aa28.59■■■□□ 2.17
VPS28-206ENST00000526734 WNK3Q9BYP7 1800 aa28.58■■■□□ 2.17
VPS28-206ENST00000526734 DDB1Q16531 1140 aa28.58■■■□□ 2.17
VPS28-206ENST00000526734 IP6K1Q92551 441 aa28.58■■■□□ 2.17
VPS28-206ENST00000526734 LRRC37A3O60309 1634 aa28.58■■■□□ 2.17
VPS28-206ENST00000526734 DEFB132Q7Z7B7 95 aa28.57■■■□□ 2.16
VPS28-206ENST00000526734 RTL1A6NKG5 1358 aa28.57■■■□□ 2.16
VPS28-206ENST00000526734 OVOS2A0A0G2JMS6 1433 aa28.56■■■□□ 2.16
VPS28-206ENST00000526734 ANKRD24Q8TF21 1146 aa28.56■■■□□ 2.16
VPS28-206ENST00000526734 NSD3Q9BZ95 1437 aa28.56■■■□□ 2.16
VPS28-206ENST00000526734 MAP3K19Q56UN5 1328 aa28.55■■■□□ 2.16
VPS28-206ENST00000526734 GGNBP2Q9H3C7 697 aa28.55■■■□□ 2.16
VPS28-206ENST00000526734 NLRP2Q9NX02 1062 aa28.54■■■□□ 2.16
VPS28-206ENST00000526734 KIF20BQ96Q89 1820 aa28.54■■■□□ 2.16
VPS28-206ENST00000526734 CARD14Q9BXL6 1004 aa28.53■■■□□ 2.16
VPS28-206ENST00000526734 TNS1Q9HBL0 1735 aaKnown RBP28.52■■■□□ 2.16
VPS28-206ENST00000526734 FAM208AQ9UK61 1670 aaKnown RBP28.52■■■□□ 2.16
VPS28-206ENST00000526734 AMPHP49418 695 aa28.52■■■□□ 2.16
VPS28-206ENST00000526734 CGNL1Q0VF96 1302 aa28.51■■■□□ 2.15
VPS28-206ENST00000526734 KIF24Q5T7B8 1368 aa28.5■■■□□ 2.15
VPS28-206ENST00000526734 PARD3Q8TEW0 1356 aa28.5■■■□□ 2.15
VPS28-206ENST00000526734 TRIM37O94972 964 aa28.5■■■□□ 2.15
VPS28-206ENST00000526734 HOXC9P31274 260 aa28.5■■■□□ 2.15
VPS28-206ENST00000526734 BCL9O00512 1426 aa28.5■■■□□ 2.15
VPS28-206ENST00000526734 POLR3GLQ9BT43 218 aa28.49■■■□□ 2.15
VPS28-206ENST00000526734 TNS2Q63HR2 1409 aa28.49■■■□□ 2.15
VPS28-206ENST00000526734 EXOC5O00471 708 aa28.48■■■□□ 2.15
VPS28-206ENST00000526734 PEAK1Q9H792 1746 aa28.48■■■□□ 2.15
VPS28-206ENST00000526734 IL2RBP14784 551 aa28.46■■■□□ 2.15
VPS28-206ENST00000526734 SMG6Q86US8 1419 aaKnown RBP28.44■■■□□ 2.14
VPS28-206ENST00000526734 APBA3O96018 575 aa28.44■■■□□ 2.14
VPS28-206ENST00000526734 EN1Q05925 392 aaPredicted RBP28.44■■■□□ 2.14
VPS28-206ENST00000526734 FLT4P35916 1363 aa28.43■■■□□ 2.14
VPS28-206ENST00000526734 RRS1Q15050 365 aaKnown RBP28.43■■■□□ 2.14
VPS28-206ENST00000526734 MARCH10Q8NA82 808 aaPredicted RBP28.42■■■□□ 2.14
VPS28-206ENST00000526734 LTV1Q96GA3 475 aaPredicted RBP28.41■■■□□ 2.14
VPS28-206ENST00000526734 INSRP06213 1382 aa28.4■■■□□ 2.14
VPS28-206ENST00000526734 FBLN1P23142 703 aa28.4■■■□□ 2.14
VPS28-206ENST00000526734 CAMKK2Q96RR4 588 aa28.4■■■□□ 2.14
VPS28-206ENST00000526734 NSD2O96028 1365 aa28.38■■■□□ 2.13
VPS28-206ENST00000526734 BCL11BQ9C0K0 894 aaPredicted RBP28.37■■■□□ 2.13
VPS28-206ENST00000526734 PANK3Q9H999 370 aa28.37■■■□□ 2.13
VPS28-206ENST00000526734 EZH2Q15910 746 aaKnown RBP28.36■■■□□ 2.13
VPS28-206ENST00000526734 ANKRD26Q9UPS8 1709 aa28.34■■■□□ 2.13
VPS28-206ENST00000526734 RGPD3A6NKT7 1758 aaPredicted RBP28.33■■■□□ 2.13
VPS28-206ENST00000526734 RGPD4Q7Z3J3 1758 aa28.33■■■□□ 2.13
VPS28-206ENST00000526734 SBF2Q86WG5 1849 aa28.33■■■□□ 2.13
VPS28-206ENST00000526734 PLSCR1O15162 318 aa28.32■■■□□ 2.12
VPS28-206ENST00000526734 HSP90AB2PQ58FF8 381 aa28.31■■■□□ 2.12
VPS28-206ENST00000526734 KIF7Q2M1P5 1343 aa28.31■■■□□ 2.12
VPS28-206ENST00000526734 RREB1Q92766 1687 aa28.31■■■□□ 2.12
VPS28-206ENST00000526734 EMILIN1Q9Y6C2 1016 aa28.3■■■□□ 2.12
VPS28-206ENST00000526734 WASHC2AQ641Q2 1341 aa28.28■■■□□ 2.12
VPS28-206ENST00000526734 NBPF6Q5VWK0 638 aa28.28■■■□□ 2.12
VPS28-206ENST00000526734 NBPF4Q96M43 638 aa28.28■■■□□ 2.12
VPS28-206ENST00000526734 KNSTRNQ9Y448 316 aa28.28■■■□□ 2.12
VPS28-206ENST00000526734 RAPGEF4Q8WZA2 1011 aa28.27■■■□□ 2.12
VPS28-206ENST00000526734 NHSQ6T4R5 1651 aa28.26■■■□□ 2.11
VPS28-206ENST00000526734 MEGF6O75095 1541 aa28.25■■■□□ 2.11
VPS28-206ENST00000526734 PPM1GO15355 546 aaPredicted RBP28.25■■■□□ 2.11
VPS28-206ENST00000526734 NBPF14Q5TI25 921 aa28.25■■■□□ 2.11
VPS28-206ENST00000526734 POLKQ9UBT6 870 aa28.25■■■□□ 2.11
VPS28-206ENST00000526734 ZCRB1Q8TBF4 217 aaKnown RBP28.24■■■□□ 2.11
VPS28-206ENST00000526734 NUP188Q5SRE5 1749 aa28.23■■■□□ 2.11
VPS28-206ENST00000526734 TATP17735 454 aaPredicted RBP28.23■■■□□ 2.11
VPS28-206ENST00000526734 RGPD2P0DJD1 1756 aa28.23■■■□□ 2.11
VPS28-206ENST00000526734 NCAPD2Q15021 1401 aa28.22■■■□□ 2.11
VPS28-206ENST00000526734 DDX54Q8TDD1 881 aaKnown RBP28.21■■■□□ 2.11
VPS28-206ENST00000526734 PSDA5PKW4 1024 aaPredicted RBP28.2■■■□□ 2.1
VPS28-206ENST00000526734 MORC1Q86VD1 984 aa28.2■■■□□ 2.1
Retrieved 100 of 20,778 RNA–protein pairs in 90.4 ms