RNA–Protein interactions for RNA: ENST00000517525.1

PVT1-204, Transcript of Pvt1 oncogene, human

TSL 3

Gene PVT1, Length 392 nt, Biotype lincRNA, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PVT1-204	ENST00000517525	CRB1	P82279	1406 aa		34.38	■■■■□ 3.09
PVT1-204	ENST00000517525	EIF4G2	P78344	907 aa	Known RBP eCLIP	34.37	■■■■□ 3.09	2e-6	■■■■■ 30.5
PVT1-204	ENST00000517525		A0A0G2JS52	829 aa		34.36	■■■■□ 3.09
PVT1-204	ENST00000517525	MYT1	Q01538	1121 aa		34.36	■■■■□ 3.09
PVT1-204	ENST00000517525	BLM	P54132	1417 aa	Predicted RBP	34.35	■■■■□ 3.09
PVT1-204	ENST00000517525	WDR17	Q8IZU2	1322 aa		34.34	■■■■□ 3.09
PVT1-204	ENST00000517525	ZBTB7C	A1YPR0	619 aa		34.34	■■■■□ 3.09
PVT1-204	ENST00000517525	SOX12	O15370	315 aa		34.32	■■■■□ 3.08
PVT1-204	ENST00000517525	USP35	Q9P2H5	1018 aa		34.32	■■■■□ 3.08
PVT1-204	ENST00000517525	EP400	Q96L91	3159 aa		34.31	■■■■□ 3.08
PVT1-204	ENST00000517525	HSPA5	P11021	654 aa	Known RBP	34.28	■■■■□ 3.08
PVT1-204	ENST00000517525	COG3	Q96JB2	828 aa		34.28	■■■■□ 3.08
PVT1-204	ENST00000517525	FYB1	O15117	783 aa		34.26	■■■■□ 3.08
PVT1-204	ENST00000517525	TOM1L2	Q6ZVM7	507 aa		34.26	■■■■□ 3.08
PVT1-204	ENST00000517525	CARD10	Q9BWT7	1032 aa		34.26	■■■■□ 3.08
PVT1-204	ENST00000517525	CDCA7	Q9BWT1	371 aa	Predicted RBP	34.22	■■■■□ 3.07
PVT1-204	ENST00000517525	CARD14	Q9BXL6	1004 aa		34.22	■■■■□ 3.07
PVT1-204	ENST00000517525	MYOM1	P52179	1685 aa		34.22	■■■■□ 3.07
PVT1-204	ENST00000517525	FAM196A	Q6ZSG2	479 aa		34.21	■■■■□ 3.07
PVT1-204	ENST00000517525	PDE3B	Q13370	1112 aa		34.2	■■■■□ 3.07
PVT1-204	ENST00000517525	ERBB3	P21860	1342 aa		34.2	■■■■□ 3.07
PVT1-204	ENST00000517525	SF3B2	Q13435	895 aa	Known RBP	34.19	■■■■□ 3.06
PVT1-204	ENST00000517525	IP6K1	Q92551	441 aa		34.19	■■■■□ 3.06
PVT1-204	ENST00000517525	CCDC7	Q96M83	1385 aa		34.19	■■■■□ 3.06
PVT1-204	ENST00000517525	PARP4	Q9UKK3	1724 aa	Known RBP	34.18	■■■■□ 3.06
PVT1-204	ENST00000517525	CSB-PGBD3	P0DP91	1061 aa		34.18	■■■■□ 3.06
PVT1-204	ENST00000517525	C11orf95	C9JLR9	678 aa	Predicted RBP	34.17	■■■■□ 3.06
PVT1-204	ENST00000517525	RGPD5	Q99666	1765 aa		34.16	■■■■□ 3.06
PVT1-204	ENST00000517525	FAM182B	Q5T319	152 aa		34.15	■■■■□ 3.06
PVT1-204	ENST00000517525	LTN1	O94822	1766 aa		34.15	■■■■□ 3.06
PVT1-204	ENST00000517525	DISP2	A7MBM2	1401 aa		34.14	■■■■□ 3.06
PVT1-204	ENST00000517525	GGNBP2	Q9H3C7	697 aa		34.14	■■■■□ 3.06
PVT1-204	ENST00000517525	MAP3K19	Q56UN5	1328 aa		34.13	■■■■□ 3.05
PVT1-204	ENST00000517525	NSD3	Q9BZ95	1437 aa		34.13	■■■■□ 3.05
PVT1-204	ENST00000517525	ANKRD24	Q8TF21	1146 aa		34.12	■■■■□ 3.05
PVT1-204	ENST00000517525	DDB1	Q16531	1140 aa		34.1	■■■■□ 3.05
PVT1-204	ENST00000517525	DEFB132	Q7Z7B7	95 aa		34.1	■■■■□ 3.05
PVT1-204	ENST00000517525	RTL1	A6NKG5	1358 aa		34.1	■■■■□ 3.05
PVT1-204	ENST00000517525	BAG6	P46379	1132 aa		34.09	■■■■□ 3.05
PVT1-204	ENST00000517525	HOXC9	P31274	260 aa		34.07	■■■■□ 3.04
PVT1-204	ENST00000517525	CGNL1	Q0VF96	1302 aa		34.06	■■■■□ 3.04
PVT1-204	ENST00000517525	NLRP2	Q9NX02	1062 aa		34.06	■■■■□ 3.04
PVT1-204	ENST00000517525	RGPD1	P0DJD0	1748 aa		34.06	■■■■□ 3.04
PVT1-204	ENST00000517525	KIF24	Q5T7B8	1368 aa		34.06	■■■■□ 3.04
PVT1-204	ENST00000517525	BCL9	O00512	1426 aa		34.05	■■■■□ 3.04
PVT1-204	ENST00000517525	LRRC37A3	O60309	1634 aa		34.05	■■■■□ 3.04
PVT1-204	ENST00000517525	FBLN1	P23142	703 aa		34.05	■■■■□ 3.04
PVT1-204	ENST00000517525	AMPH	P49418	695 aa		34.05	■■■■□ 3.04
PVT1-204	ENST00000517525	WNK3	Q9BYP7	1800 aa		34.04	■■■■□ 3.04
PVT1-204	ENST00000517525	KIF20B	Q96Q89	1820 aa		34.04	■■■■□ 3.04
PVT1-204	ENST00000517525	OVOS2	A0A0G2JMS6	1433 aa		34.04	■■■■□ 3.04
PVT1-204	ENST00000517525	POLR3GL	Q9BT43	218 aa		34.02	■■■■□ 3.04
PVT1-204	ENST00000517525	EXOC5	O00471	708 aa		34.01	■■■■□ 3.03
PVT1-204	ENST00000517525	TRIM37	O94972	964 aa		34.01	■■■■□ 3.03
PVT1-204	ENST00000517525	PEAK1	Q9H792	1746 aa		34.01	■■■■□ 3.03
PVT1-204	ENST00000517525	RRS1	Q15050	365 aa	Known RBP	34	■■■■□ 3.03
PVT1-204	ENST00000517525	IL2RB	P14784	551 aa		33.99	■■■■□ 3.03
PVT1-204	ENST00000517525	MARCH10	Q8NA82	808 aa	Predicted RBP	33.99	■■■■□ 3.03
PVT1-204	ENST00000517525	PANK3	Q9H999	370 aa		33.98	■■■■□ 3.03
PVT1-204	ENST00000517525	TNS1	Q9HBL0	1735 aa	Known RBP	33.98	■■■■□ 3.03
PVT1-204	ENST00000517525	FAM208A	Q9UK61	1670 aa	Known RBP	33.97	■■■■□ 3.03
PVT1-204	ENST00000517525	TNS2	Q63HR2	1409 aa		33.96	■■■■□ 3.03
PVT1-204	ENST00000517525	PARD3	Q8TEW0	1356 aa		33.96	■■■■□ 3.03
PVT1-204	ENST00000517525	EN1	Q05925	392 aa	Predicted RBP	33.95	■■■■□ 3.03
PVT1-204	ENST00000517525	INSR	P06213	1382 aa		33.95	■■■■□ 3.02
PVT1-204	ENST00000517525	CAMKK2	Q96RR4	588 aa		33.94	■■■■□ 3.02
PVT1-204	ENST00000517525	FLT4	P35916	1363 aa		33.94	■■■■□ 3.02
PVT1-204	ENST00000517525	LTV1	Q96GA3	475 aa	Predicted RBP	33.93	■■■■□ 3.02
PVT1-204	ENST00000517525	APBA3	O96018	575 aa		33.92	■■■■□ 3.02
PVT1-204	ENST00000517525	NSD2	O96028	1365 aa		33.91	■■■■□ 3.02
PVT1-204	ENST00000517525	KIF7	Q2M1P5	1343 aa		33.91	■■■■□ 3.02
PVT1-204	ENST00000517525	HSP90AB2P	Q58FF8	381 aa		33.89	■■■■□ 3.02
PVT1-204	ENST00000517525	BCL11B	Q9C0K0	894 aa	Predicted RBP	33.89	■■■■□ 3.02
PVT1-204	ENST00000517525	SMG6	Q86US8	1419 aa	Known RBP	33.87	■■■■□ 3.01
PVT1-204	ENST00000517525	EZH2	Q15910	746 aa	Known RBP	33.86	■■■■□ 3.01
PVT1-204	ENST00000517525	EMILIN1	Q9Y6C2	1016 aa		33.86	■■■■□ 3.01
PVT1-204	ENST00000517525	WASHC2A	Q641Q2	1341 aa		33.85	■■■■□ 3.01
PVT1-204	ENST00000517525	NBPF6	Q5VWK0	638 aa		33.85	■■■■□ 3.01
PVT1-204	ENST00000517525	NBPF4	Q96M43	638 aa		33.85	■■■■□ 3.01
PVT1-204	ENST00000517525	PLSCR1	O15162	318 aa		33.83	■■■■□ 3.01
PVT1-204	ENST00000517525	POLK	Q9UBT6	870 aa		33.83	■■■■□ 3.01
PVT1-204	ENST00000517525	ANKRD26	Q9UPS8	1709 aa		33.82	■■■■□ 3
PVT1-204	ENST00000517525	SBF2	Q86WG5	1849 aa		33.82	■■■■□ 3
PVT1-204	ENST00000517525	KNSTRN	Q9Y448	316 aa		33.81	■■■■□ 3
PVT1-204	ENST00000517525	NCAPD2	Q15021	1401 aa		33.77	■■■■□ 3
PVT1-204	ENST00000517525	PTF1A	Q7RTS3	328 aa		33.76	■■■□□ 2.99
PVT1-204	ENST00000517525	AMER1	Q5JTC6	1135 aa	Predicted RBP	33.75	■■■□□ 2.99
PVT1-204	ENST00000517525	MEGF6	O75095	1541 aa		33.74	■■■□□ 2.99
PVT1-204	ENST00000517525	PER1	O15534	1290 aa	Predicted RBP	33.74	■■■□□ 2.99
PVT1-204	ENST00000517525	ZCRB1	Q8TBF4	217 aa	Known RBP	33.74	■■■□□ 2.99
PVT1-204	ENST00000517525	RGPD3	A6NKT7	1758 aa	Predicted RBP	33.74	■■■□□ 2.99
PVT1-204	ENST00000517525	RGPD2	P0DJD1	1756 aa		33.74	■■■□□ 2.99
PVT1-204	ENST00000517525	RGPD4	Q7Z3J3	1758 aa		33.74	■■■□□ 2.99
PVT1-204	ENST00000517525	MAP2	P11137	1827 aa	Known RBP	33.72	■■■□□ 2.99
PVT1-204	ENST00000517525	RREB1	Q92766	1687 aa		33.72	■■■□□ 2.99
PVT1-204	ENST00000517525	PPM1G	O15355	546 aa	Predicted RBP	33.72	■■■□□ 2.99
PVT1-204	ENST00000517525	RAPGEF4	Q8WZA2	1011 aa		33.72	■■■□□ 2.99
PVT1-204	ENST00000517525	MORC1	Q86VD1	984 aa		33.71	■■■□□ 2.99
PVT1-204	ENST00000517525	SRCAP	Q6ZRS2	3230 aa		33.71	■■■□□ 2.99
PVT1-204	ENST00000517525	USHBP1	Q8N6Y0	703 aa		33.7	■■■□□ 2.99

Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms