RNA–Protein interactions for RNA: ENST00000506783.5

PHF3-208, Transcript of PHD finger protein 3, human

TSL 1 (best)

Gene PHF3, Length 3,700 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PHF3-208	ENST00000506783	DUOX2	Q9NRD8	1548 aa		11.8	□□□□□ -0.52
PHF3-208	ENST00000506783	NASP	P49321	788 aa	Predicted RBP	11.8	□□□□□ -0.52
PHF3-208	ENST00000506783	PIP4K2A	P48426	406 aa	Predicted RBP	11.8	□□□□□ -0.52
PHF3-208	ENST00000506783	ESCO1	Q5FWF5	840 aa		11.79	□□□□□ -0.52
PHF3-208	ENST00000506783	R3HCC1	Q9Y3T6	440 aa	Known RBP	11.79	□□□□□ -0.52
PHF3-208	ENST00000506783		K7ELQ4	463 aa	Predicted RBP	11.79	□□□□□ -0.52
PHF3-208	ENST00000506783	CPA1	P15085	419 aa		11.79	□□□□□ -0.52
PHF3-208	ENST00000506783	AMOTL2	Q9Y2J4	779 aa		11.79	□□□□□ -0.52
PHF3-208	ENST00000506783	ATP7A	Q04656	1500 aa		11.79	□□□□□ -0.52
PHF3-208	ENST00000506783	SYCE3	A1L190	88 aa		11.78	□□□□□ -0.52
PHF3-208	ENST00000506783	DDX11L8	A8MPP1	907 aa		11.78	□□□□□ -0.52
PHF3-208	ENST00000506783	CDC45	O75419	566 aa		11.78	□□□□□ -0.52
PHF3-208	ENST00000506783	PTPRT	O14522	1441 aa		11.78	□□□□□ -0.52
PHF3-208	ENST00000506783	POGZ	Q7Z3K3	1410 aa		11.78	□□□□□ -0.52
PHF3-208	ENST00000506783	ATP10A	O60312	1499 aa		11.78	□□□□□ -0.52
PHF3-208	ENST00000506783	SRCAP	Q6ZRS2	3230 aa		11.78	□□□□□ -0.52
PHF3-208	ENST00000506783	INSR	P06213	1382 aa		11.78	□□□□□ -0.52
PHF3-208	ENST00000506783	PSME1	Q06323	249 aa		11.78	□□□□□ -0.52
PHF3-208	ENST00000506783	HSP90AA2P	Q14568	343 aa	Predicted RBP	11.78	□□□□□ -0.52
PHF3-208	ENST00000506783	TCEANC2	Q96MN5	208 aa		11.78	□□□□□ -0.52
PHF3-208	ENST00000506783	SIL1	Q9H173	461 aa		11.78	□□□□□ -0.52
PHF3-208	ENST00000506783	ERVK-7	P63135	1459 aa		11.78	□□□□□ -0.52
PHF3-208	ENST00000506783	SURF6	O75683	361 aa	Known RBP	11.78	□□□□□ -0.52
PHF3-208	ENST00000506783	FCHSD2	O94868	740 aa		11.78	□□□□□ -0.52
PHF3-208	ENST00000506783	NUCB1	Q02818	461 aa		11.78	□□□□□ -0.52
PHF3-208	ENST00000506783	FAM177B	A6PVY3	158 aa		11.77	□□□□□ -0.52
PHF3-208	ENST00000506783	ZNF830	Q96NB3	372 aa	Predicted RBP	11.77	□□□□□ -0.52
PHF3-208	ENST00000506783	ZBTB7B	O15156	539 aa	Predicted RBP	11.77	□□□□□ -0.53
PHF3-208	ENST00000506783	SIRT2	Q8IXJ6	389 aa		11.77	□□□□□ -0.53
PHF3-208	ENST00000506783	SDS	P20132	328 aa		11.77	□□□□□ -0.53
PHF3-208	ENST00000506783	AEBP2	Q6ZN18	517 aa	Predicted RBP	11.76	□□□□□ -0.53
PHF3-208	ENST00000506783	POLR3A	O14802	1390 aa	Predicted RBP	11.76	□□□□□ -0.53
PHF3-208	ENST00000506783	MYO5C	Q9NQX4	1742 aa		11.76	□□□□□ -0.53
PHF3-208	ENST00000506783	ESPN	B1AK53	854 aa		11.76	□□□□□ -0.53
PHF3-208	ENST00000506783	ST18	O60284	1047 aa		11.76	□□□□□ -0.53
PHF3-208	ENST00000506783	ANTXR1	Q9H6X2	564 aa		11.76	□□□□□ -0.53
PHF3-208	ENST00000506783	API5	Q9BZZ5	524 aa	Known RBP	11.76	□□□□□ -0.53
PHF3-208	ENST00000506783	PIK3C2G	O75747	1445 aa		11.76	□□□□□ -0.53
PHF3-208	ENST00000506783	FAM43A	Q8N2R8	423 aa		11.75	□□□□□ -0.53
PHF3-208	ENST00000506783	MRPL50	Q8N5N7	158 aa	Known RBP	11.75	□□□□□ -0.53
PHF3-208	ENST00000506783	RIMBP3C	A6NJZ7	1639 aa		11.75	□□□□□ -0.53
PHF3-208	ENST00000506783	RIMBP3B	A6NNM3	1639 aa		11.75	□□□□□ -0.53
PHF3-208	ENST00000506783	RIMBP3	Q9UFD9	1639 aa		11.75	□□□□□ -0.53
PHF3-208	ENST00000506783	MRE11	P49959	708 aa		11.75	□□□□□ -0.53
PHF3-208	ENST00000506783	FERMT3	Q86UX7	667 aa		11.75	□□□□□ -0.53
PHF3-208	ENST00000506783	STAC3	Q96MF2	364 aa		11.75	□□□□□ -0.53
PHF3-208	ENST00000506783	SPG7	Q9UQ90	795 aa		11.75	□□□□□ -0.53
PHF3-208	ENST00000506783	RTEL1-TNFRSF6B	F6WH68	1400 aa		11.75	□□□□□ -0.53
PHF3-208	ENST00000506783	FIBP	O43427	364 aa		11.75	□□□□□ -0.53
PHF3-208	ENST00000506783	GSPT1	P15170	499 aa	Known RBP	11.74	□□□□□ -0.53
PHF3-208	ENST00000506783	FGD1	P98174	961 aa		11.74	□□□□□ -0.53
PHF3-208	ENST00000506783	CWC27	Q6UX04	472 aa	Known RBP	11.74	□□□□□ -0.53
PHF3-208	ENST00000506783	SMC5	Q8IY18	1101 aa		11.74	□□□□□ -0.53
PHF3-208	ENST00000506783	RSPH6A	Q9H0K4	717 aa		11.74	□□□□□ -0.53
PHF3-208	ENST00000506783	VPS37C	A5D8V6	355 aa	Predicted RBP	11.74	□□□□□ -0.53
PHF3-208	ENST00000506783	CSB-PGBD3	P0DP91	1061 aa		11.74	□□□□□ -0.53
PHF3-208	ENST00000506783	ABTB2	Q8N961	1025 aa		11.74	□□□□□ -0.53
PHF3-208	ENST00000506783	PLEKHF1	Q96S99	279 aa		11.74	□□□□□ -0.53
PHF3-208	ENST00000506783	SHANK2	Q9UPX8	1470 aa		11.74	□□□□□ -0.53
PHF3-208	ENST00000506783	LTK	P29376	864 aa		11.74	□□□□□ -0.53
PHF3-208	ENST00000506783	CEBPZ	Q03701	1054 aa	Known RBP	11.74	□□□□□ -0.53
PHF3-208	ENST00000506783	STK3	Q13188	491 aa		11.74	□□□□□ -0.53
PHF3-208	ENST00000506783	TNR	Q92752	1358 aa		11.73	□□□□□ -0.53
PHF3-208	ENST00000506783	CCDC61	Q9Y6R9	512 aa		11.73	□□□□□ -0.53
PHF3-208	ENST00000506783	INTS3	Q68E01	1043 aa	Known RBP	11.73	□□□□□ -0.53
PHF3-208	ENST00000506783	LRRFIP2	Q9Y608	721 aa	Known RBP	11.73	□□□□□ -0.53
PHF3-208	ENST00000506783	PLEKHM2	Q8IWE5	1019 aa		11.73	□□□□□ -0.53
PHF3-208	ENST00000506783	NPAT	Q14207	1427 aa		11.73	□□□□□ -0.53
PHF3-208	ENST00000506783	RPGRIP1L	Q68CZ1	1315 aa		11.73	□□□□□ -0.53
PHF3-208	ENST00000506783	ADGB	Q8N7X0	1667 aa		11.72	□□□□□ -0.53
PHF3-208	ENST00000506783	BAG4	O95429	457 aa	Known RBP	11.72	□□□□□ -0.53
PHF3-208	ENST00000506783	ATF3	P18847	181 aa		11.72	□□□□□ -0.53
PHF3-208	ENST00000506783	HDAC1	Q13547	482 aa	Predicted RBP	11.72	□□□□□ -0.53
PHF3-208	ENST00000506783	EIF4A2	Q14240	407 aa	Known RBP	11.72	□□□□□ -0.53
PHF3-208	ENST00000506783	KIAA1211	Q6ZU35	1233 aa		11.72	□□□□□ -0.53
PHF3-208	ENST00000506783	STK11IP	Q8N1F8	1099 aa		11.72	□□□□□ -0.53
PHF3-208	ENST00000506783	HMMR	O75330	724 aa		11.71	□□□□□ -0.53
PHF3-208	ENST00000506783	SPC24	Q8NBT2	197 aa		11.71	□□□□□ -0.53
PHF3-208	ENST00000506783	TSC1	Q92574	1164 aa		11.71	□□□□□ -0.53
PHF3-208	ENST00000506783	GCC1	Q96CN9	775 aa		11.71	□□□□□ -0.53
PHF3-208	ENST00000506783	WASL	O00401	505 aa	Predicted RBP	11.71	□□□□□ -0.53
PHF3-208	ENST00000506783	ZBTB9	Q96C00	473 aa		11.71	□□□□□ -0.53
PHF3-208	ENST00000506783	CCDC85A	Q96PX6	553 aa	Predicted RBP	11.71	□□□□□ -0.53
PHF3-208	ENST00000506783	PHAX	Q9H814	394 aa	Known RBP	11.71	□□□□□ -0.53
PHF3-208	ENST00000506783	TRPM1	Q7Z4N2	1603 aa		11.71	□□□□□ -0.53
PHF3-208	ENST00000506783	ANKRD36B	Q8N2N9	1353 aa		11.71	□□□□□ -0.54
PHF3-208	ENST00000506783	PRIM1	P49642	420 aa	Known RBP	11.71	□□□□□ -0.54
PHF3-208	ENST00000506783	MPRIP	Q6WCQ1	1025 aa		11.71	□□□□□ -0.54
PHF3-208	ENST00000506783	C17orf53	Q8N3J3	647 aa	Predicted RBP	11.71	□□□□□ -0.54
PHF3-208	ENST00000506783	NDUFB9	Q9Y6M9	179 aa		11.71	□□□□□ -0.54
PHF3-208	ENST00000506783	CDC42BPB	Q9Y5S2	1711 aa		11.71	□□□□□ -0.54
PHF3-208	ENST00000506783	ABCC1	P33527	1531 aa		11.7	□□□□□ -0.54
PHF3-208	ENST00000506783	SYNM	O15061	1565 aa		11.7	□□□□□ -0.54
PHF3-208	ENST00000506783	CFAP44	Q96MT7	982 aa		11.7	□□□□□ -0.54
PHF3-208	ENST00000506783	SRGAP3	O43295	1099 aa		11.7	□□□□□ -0.54
PHF3-208	ENST00000506783	MYL6B	P14649	208 aa		11.7	□□□□□ -0.54
PHF3-208	ENST00000506783	HDGFL1	Q5TGJ6	251 aa		11.7	□□□□□ -0.54
PHF3-208	ENST00000506783	LMOD3	Q0VAK6	560 aa		11.7	□□□□□ -0.54
PHF3-208	ENST00000506783	MTHFSD	Q2M296	383 aa	Known RBP	11.7	□□□□□ -0.54
PHF3-208	ENST00000506783	BMP2KL	Q5H9B9	411 aa		11.7	□□□□□ -0.54

Retrieved 100 of 20,778 RNA–protein pairs in 105.1 ms