RNA–Protein interactions for RNA: ENST00000496856.5

ZNF639-209, Transcript of zinc finger protein 639, human

APPRIS P1 TSL 1 (best) BASIC

Gene ZNF639, Length 2,033 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ZNF639-209	ENST00000496856	XPC	Q01831	940 aa	Predicted RBP	32.7	■■■□□ 2.82
ZNF639-209	ENST00000496856	MYH16	Q9H6N6	1097 aa		32.7	■■■□□ 2.82
ZNF639-209	ENST00000496856	NFE2L2	Q16236	605 aa		32.68	■■■□□ 2.82
ZNF639-209	ENST00000496856	SULT6B1	Q6IMI4	303 aa		32.68	■■■□□ 2.82
ZNF639-209	ENST00000496856	STRC	Q7RTU9	1775 aa		32.68	■■■□□ 2.82
ZNF639-209	ENST00000496856	B4GALNT3	Q6L9W6	998 aa		32.67	■■■□□ 2.82
ZNF639-209	ENST00000496856	AEBP1	Q8IUX7	1158 aa		32.65	■■■□□ 2.82
ZNF639-209	ENST00000496856	MARF1	Q9Y4F3	1742 aa	Known RBP	32.65	■■■□□ 2.82
ZNF639-209	ENST00000496856	USP54	Q70EL1	1684 aa		32.64	■■■□□ 2.82
ZNF639-209	ENST00000496856	KRT28	Q7Z3Y7	464 aa		32.64	■■■□□ 2.82
ZNF639-209	ENST00000496856	CADPS2	Q86UW7	1296 aa		32.64	■■■□□ 2.82
ZNF639-209	ENST00000496856	DCC	P43146	1447 aa		32.63	■■■□□ 2.81
ZNF639-209	ENST00000496856	GOLGA6L2	Q8N9W4	650 aa	Predicted RBP	32.62	■■■□□ 2.81
ZNF639-209	ENST00000496856	EXOC6	Q8TAG9	804 aa		32.62	■■■□□ 2.81
ZNF639-209	ENST00000496856	MST1R	Q04912	1400 aa		32.62	■■■□□ 2.81
ZNF639-209	ENST00000496856	HOXC9	P31274	260 aa		32.61	■■■□□ 2.81
ZNF639-209	ENST00000496856	LMOD2	Q6P5Q4	547 aa		32.61	■■■□□ 2.81
ZNF639-209	ENST00000496856	IL16	Q14005	1332 aa		32.61	■■■□□ 2.81
ZNF639-209	ENST00000496856	MSH6	P52701	1360 aa		32.6	■■■□□ 2.81
ZNF639-209	ENST00000496856	KIF24	Q5T7B8	1368 aa		32.6	■■■□□ 2.81
ZNF639-209	ENST00000496856	BCAR3	O75815	825 aa		32.59	■■■□□ 2.81
ZNF639-209	ENST00000496856	KCNH5	Q8NCM2	988 aa		32.58	■■■□□ 2.81
ZNF639-209	ENST00000496856	TSR2	Q969E8	191 aa	Known RBP	32.58	■■■□□ 2.81
ZNF639-209	ENST00000496856	KIF1A	Q12756	1690 aa		32.58	■■■□□ 2.81
ZNF639-209	ENST00000496856	ZNF335	Q9H4Z2	1342 aa	Predicted RBP	32.56	■■■□□ 2.8
ZNF639-209	ENST00000496856	FANCI	Q9NVI1	1328 aa		32.56	■■■□□ 2.8
ZNF639-209	ENST00000496856	CCDC136	Q96JN2	1154 aa		32.56	■■■□□ 2.8
ZNF639-209	ENST00000496856	ARHGEF10	O15013	1369 aa		32.55	■■■□□ 2.8
ZNF639-209	ENST00000496856	PLEKHG5	O94827	1062 aa		32.55	■■■□□ 2.8
ZNF639-209	ENST00000496856	C20orf194	Q5TEA3	1177 aa		32.55	■■■□□ 2.8
ZNF639-209	ENST00000496856	EYA1	Q99502	592 aa		32.55	■■■□□ 2.8
ZNF639-209	ENST00000496856	RGPD1	P0DJD0	1748 aa		32.53	■■■□□ 2.8
ZNF639-209	ENST00000496856	LMOD3	Q0VAK6	560 aa		32.53	■■■□□ 2.8
ZNF639-209	ENST00000496856	CRBN	Q96SW2	442 aa		32.53	■■■□□ 2.8
ZNF639-209	ENST00000496856	CALD1	Q05682	793 aa	Known RBP	32.51	■■■□□ 2.8
ZNF639-209	ENST00000496856	LTV1	Q96GA3	475 aa	Predicted RBP	32.51	■■■□□ 2.8
ZNF639-209	ENST00000496856	ZBTB7C	A1YPR0	619 aa		32.51	■■■□□ 2.79
ZNF639-209	ENST00000496856	RARS	P54136	660 aa	Known RBP	32.51	■■■□□ 2.79
ZNF639-209	ENST00000496856	THUMPD2	Q9BTF0	503 aa	Known RBP	32.51	■■■□□ 2.79
ZNF639-209	ENST00000496856	GC	P02774	474 aa		32.5	■■■□□ 2.79
ZNF639-209	ENST00000496856	IP6K1	Q92551	441 aa		32.5	■■■□□ 2.79
ZNF639-209	ENST00000496856	DDX17	Q92841	729 aa	Known RBP	32.5	■■■□□ 2.79
ZNF639-209	ENST00000496856	RTL1	A6NKG5	1358 aa		32.5	■■■□□ 2.79
ZNF639-209	ENST00000496856	EXOSC9	Q06265	439 aa	Known RBP	32.5	■■■□□ 2.79
ZNF639-209	ENST00000496856	LAS1L	Q9Y4W2	734 aa	Known RBP	32.5	■■■□□ 2.79
ZNF639-209	ENST00000496856	IGSF1	Q8N6C5	1336 aa		32.49	■■■□□ 2.79
ZNF639-209	ENST00000496856	NFAT5	O94916	1531 aa		32.49	■■■□□ 2.79
ZNF639-209	ENST00000496856	TRPM3	Q9HCF6	1732 aa	Predicted RBP	32.48	■■■□□ 2.79
ZNF639-209	ENST00000496856	CT47B1	P0C2W7	299 aa	Predicted RBP	32.46	■■■□□ 2.79
ZNF639-209	ENST00000496856	XIRP1	Q702N8	1843 aa	Known RBP	32.45	■■■□□ 2.79
ZNF639-209	ENST00000496856	FAM83G	A6ND36	823 aa		32.45	■■■□□ 2.79
ZNF639-209	ENST00000496856	NPHP3	Q7Z494	1330 aa		32.45	■■■□□ 2.79
ZNF639-209	ENST00000496856	KDR	P35968	1356 aa		32.45	■■■□□ 2.79
ZNF639-209	ENST00000496856	LTN1	O94822	1766 aa		32.45	■■■□□ 2.78
ZNF639-209	ENST00000496856	CANX	P27824	592 aa	Known RBP	32.44	■■■□□ 2.78
ZNF639-209	ENST00000496856	USP19	O94966	1318 aa		32.43	■■■□□ 2.78
ZNF639-209	ENST00000496856	GNAI1	P63096	354 aa		32.43	■■■□□ 2.78
ZNF639-209	ENST00000496856	DCTN1	Q14203	1278 aa		32.43	■■■□□ 2.78
ZNF639-209	ENST00000496856	DLG5	Q8TDM6	1919 aa		32.42	■■■□□ 2.78
ZNF639-209	ENST00000496856	ARHGEF25	Q86VW2	580 aa		32.42	■■■□□ 2.78
ZNF639-209	ENST00000496856	IFT57	Q9NWB7	429 aa		32.42	■■■□□ 2.78
ZNF639-209	ENST00000496856	FRAT1	Q92837	279 aa	Predicted RBP	32.41	■■■□□ 2.78
ZNF639-209	ENST00000496856	BCL2L13	Q9BXK5	485 aa		32.41	■■■□□ 2.78
ZNF639-209	ENST00000496856	SLIT3	O75094	1523 aa		32.41	■■■□□ 2.78
ZNF639-209	ENST00000496856	MTHFSD	Q2M296	383 aa	Known RBP	32.39	■■■□□ 2.78
ZNF639-209	ENST00000496856	ZNF853	P0CG23	659 aa		32.38	■■■□□ 2.77
ZNF639-209	ENST00000496856	SLAIN2	Q9P270	581 aa		32.38	■■■□□ 2.77
ZNF639-209	ENST00000496856	BRINP3	Q76B58	766 aa		32.37	■■■□□ 2.77
ZNF639-209	ENST00000496856	CFAP44	Q96MT7	982 aa		32.37	■■■□□ 2.77
ZNF639-209	ENST00000496856	PDE3A	Q14432	1141 aa		32.36	■■■□□ 2.77
ZNF639-209	ENST00000496856	MBIP	Q9NS73	344 aa		32.35	■■■□□ 2.77
ZNF639-209	ENST00000496856	ALS2	Q96Q42	1657 aa		32.35	■■■□□ 2.77
ZNF639-209	ENST00000496856	MCM10	Q7L590	875 aa		32.34	■■■□□ 2.77
ZNF639-209	ENST00000496856	USHBP1	Q8N6Y0	703 aa		32.34	■■■□□ 2.77
ZNF639-209	ENST00000496856	GAS2L2	Q8NHY3	880 aa		32.34	■■■□□ 2.77
ZNF639-209	ENST00000496856	NBPF6	Q5VWK0	638 aa		32.33	■■■□□ 2.77
ZNF639-209	ENST00000496856	NBPF4	Q96M43	638 aa		32.33	■■■□□ 2.77
ZNF639-209	ENST00000496856	ZC3H6	P61129	1189 aa	Known RBP	32.32	■■■□□ 2.76
ZNF639-209	ENST00000496856	SMC4	Q9NTJ3	1288 aa		32.32	■■■□□ 2.76
ZNF639-209	ENST00000496856	RTF1	Q92541	710 aa	Known RBP	32.31	■■■□□ 2.76
ZNF639-209	ENST00000496856	PHRF1	Q9P1Y6	1649 aa	Known RBP	32.31	■■■□□ 2.76
ZNF639-209	ENST00000496856	SSH1	Q8WYL5	1049 aa		32.31	■■■□□ 2.76
ZNF639-209	ENST00000496856	TNS3	Q68CZ2	1445 aa		32.3	■■■□□ 2.76
ZNF639-209	ENST00000496856	PANK1	Q8TE04	598 aa		32.29	■■■□□ 2.76
ZNF639-209	ENST00000496856	SPATA31A3	Q5VYP0	1347 aa		32.29	■■■□□ 2.76
ZNF639-209	ENST00000496856	PXDN	Q92626	1479 aa		32.29	■■■□□ 2.76
ZNF639-209	ENST00000496856	MED1	Q15648	1581 aa	Predicted RBP	32.28	■■■□□ 2.76
ZNF639-209	ENST00000496856	LRRC59	Q96AG4	307 aa	Known RBP	32.27	■■■□□ 2.76
ZNF639-209	ENST00000496856	CABLES1	Q8TDN4	633 aa		32.27	■■■□□ 2.76
ZNF639-209	ENST00000496856	ANKRD24	Q8TF21	1146 aa		32.27	■■■□□ 2.76
ZNF639-209	ENST00000496856	AXIN2	Q9Y2T1	843 aa		32.27	■■■□□ 2.76
ZNF639-209	ENST00000496856	ZKSCAN2	Q63HK3	967 aa		32.25	■■■□□ 2.75
ZNF639-209	ENST00000496856	VAMP4	O75379	141 aa		32.24	■■■□□ 2.75
ZNF639-209	ENST00000496856	ZNF428	Q96B54	188 aa		32.24	■■■□□ 2.75
ZNF639-209	ENST00000496856	COG6	Q9Y2V7	657 aa		32.24	■■■□□ 2.75
ZNF639-209	ENST00000496856	ELL2	O00472	640 aa	Predicted RBP	32.24	■■■□□ 2.75
ZNF639-209	ENST00000496856	ALDH1L2	Q3SY69	923 aa		32.24	■■■□□ 2.75
ZNF639-209	ENST00000496856	TSPYL6	Q8N831	410 aa		32.24	■■■□□ 2.75
ZNF639-209	ENST00000496856	CHL1	O00533	1208 aa		32.23	■■■□□ 2.75
ZNF639-209	ENST00000496856	GNAT3	A8MTJ3	354 aa		32.22	■■■□□ 2.75

Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms