RNA–Protein interactions for RNA: ENST00000495485.1

HDAC3-214, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 797 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-214ENST00000495485 ADAMTS2O95450 1211 aa13.54□□□□□ -0.24
HDAC3-214ENST00000495485 ERICH6BQ5W0A0 696 aa13.54□□□□□ -0.24
HDAC3-214ENST00000495485 C8orf37Q96NL8 207 aa13.54□□□□□ -0.24
HDAC3-214ENST00000495485 PRDM11Q9NQV5 511 aa13.54□□□□□ -0.24
HDAC3-214ENST00000495485 AATKQ6ZMQ8 1374 aa13.54□□□□□ -0.24
HDAC3-214ENST00000495485 TNNT2P45379 298 aaPredicted RBP13.53□□□□□ -0.24
HDAC3-214ENST00000495485 MTHFSP49914 203 aa13.53□□□□□ -0.24
HDAC3-214ENST00000495485 CABLES1Q8TDN4 633 aa13.53□□□□□ -0.24
HDAC3-214ENST00000495485 AFF2P51816 1311 aa13.53□□□□□ -0.24
HDAC3-214ENST00000495485 NFAT5O94916 1531 aa13.53□□□□□ -0.24
HDAC3-214ENST00000495485 NME9Q86XW9 330 aa13.52□□□□□ -0.25
HDAC3-214ENST00000495485 UNC5CLQ8IV45 518 aa13.52□□□□□ -0.25
HDAC3-214ENST00000495485 GGNBP2Q9H3C7 697 aa13.52□□□□□ -0.25
HDAC3-214ENST00000495485 TRPC5Q9UL62 973 aaPredicted RBP13.52□□□□□ -0.25
HDAC3-214ENST00000495485 KIAA0232Q92628 1395 aa13.52□□□□□ -0.25
HDAC3-214ENST00000495485 LTN1O94822 1766 aa13.52□□□□□ -0.25
HDAC3-214ENST00000495485 RTL1A6NKG5 1358 aa13.51□□□□□ -0.25
HDAC3-214ENST00000495485 NUTM2GQ5VZR2 741 aa13.51□□□□□ -0.25
HDAC3-214ENST00000495485 ARHGEF25Q86VW2 580 aa13.51□□□□□ -0.25
HDAC3-214ENST00000495485 USP21Q9UK80 565 aa13.51□□□□□ -0.25
HDAC3-214ENST00000495485 LMO7Q8WWI1 1683 aa13.5□□□□□ -0.25
HDAC3-214ENST00000495485 FAM83GA6ND36 823 aa13.5□□□□□ -0.25
HDAC3-214ENST00000495485 NRAPQ86VF7 1730 aa13.5□□□□□ -0.25
HDAC3-214ENST00000495485 BCL9LQ86UU0 1499 aa13.49□□□□□ -0.25
HDAC3-214ENST00000495485 CDK12Q9NYV4 1490 aaPredicted RBP13.49□□□□□ -0.25
HDAC3-214ENST00000495485 MAP2P11137 1827 aaKnown RBP13.49□□□□□ -0.25
HDAC3-214ENST00000495485 NEFMP07197 916 aa13.49□□□□□ -0.25
HDAC3-214ENST00000495485 NCBP3Q53F19 620 aaKnown RBP13.49□□□□□ -0.25
HDAC3-214ENST00000495485 SUPT16HQ9Y5B9 1047 aaKnown RBP13.49□□□□□ -0.25
HDAC3-214ENST00000495485 COL18A1P39060 1754 aa13.49□□□□□ -0.25
HDAC3-214ENST00000495485 FAM208AQ9UK61 1670 aaKnown RBP13.49□□□□□ -0.25
HDAC3-214ENST00000495485 ATRNO75882 1429 aa13.48□□□□□ -0.25
HDAC3-214ENST00000495485 ZC3H6P61129 1189 aaKnown RBP13.48□□□□□ -0.25
HDAC3-214ENST00000495485 FKBP8Q14318 412 aa13.48□□□□□ -0.25
HDAC3-214ENST00000495485 VPS72Q15906 364 aa13.48□□□□□ -0.25
HDAC3-214ENST00000495485 RUNDC1Q96C34 613 aa13.48□□□□□ -0.25
HDAC3-214ENST00000495485 RBM6P78332 1123 aaKnown RBP13.47□□□□□ -0.25
HDAC3-214ENST00000495485 BTG4Q9NY30 223 aa13.47□□□□□ -0.25
HDAC3-214ENST00000495485 DIAPH1O60610 1272 aaKnown RBP13.46□□□□□ -0.25
HDAC3-214ENST00000495485 QTRT2Q9H974 415 aaKnown RBP13.46□□□□□ -0.25
HDAC3-214ENST00000495485 RGS17Q9UGC6 210 aaPredicted RBP13.46□□□□□ -0.25
HDAC3-214ENST00000495485 RXRBP28702 533 aa13.45□□□□□ -0.26
HDAC3-214ENST00000495485 GOLGA2Q08379 1002 aa13.45□□□□□ -0.26
HDAC3-214ENST00000495485 IP6K1Q92551 441 aa13.45□□□□□ -0.26
HDAC3-214ENST00000495485 THRAP3Q9Y2W1 955 aaKnown RBP13.45□□□□□ -0.26
HDAC3-214ENST00000495485 SALL2Q9Y467 1007 aaPredicted RBP13.45□□□□□ -0.26
HDAC3-214ENST00000495485 FLT4P35916 1363 aa13.45□□□□□ -0.26
HDAC3-214ENST00000495485 CAMTA1Q9Y6Y1 1673 aa13.44□□□□□ -0.26
HDAC3-214ENST00000495485 COL5A2P05997 1499 aaPredicted RBP13.44□□□□□ -0.26
HDAC3-214ENST00000495485 U2AF1L5P0DN76 240 aaPredicted RBP13.44□□□□□ -0.26
HDAC3-214ENST00000495485 EVA1CP58658 441 aa13.44□□□□□ -0.26
HDAC3-214ENST00000495485 U2AF1Q01081 240 aaKnown RBP eCLIP13.44□□□□□ -0.26
HDAC3-214ENST00000495485 GJD4Q96KN9 370 aaPredicted RBP13.44□□□□□ -0.26
HDAC3-214ENST00000495485 RGPD5Q99666 1765 aa13.44□□□□□ -0.26
HDAC3-214ENST00000495485 AMPHP49418 695 aa13.43□□□□□ -0.26
HDAC3-214ENST00000495485 CRB1P82279 1406 aa13.43□□□□□ -0.26
HDAC3-214ENST00000495485 CDCA7Q9BWT1 371 aaPredicted RBP13.43□□□□□ -0.26
HDAC3-214ENST00000495485 ZRANB1Q9UGI0 708 aa13.43□□□□□ -0.26
HDAC3-214ENST00000495485 WDR17Q8IZU2 1322 aa13.42□□□□□ -0.26
HDAC3-214ENST00000495485 MAPK8IP3Q9UPT6 1336 aa13.42□□□□□ -0.26
HDAC3-214ENST00000495485 APAF1O14727 1248 aa13.42□□□□□ -0.26
HDAC3-214ENST00000495485 U2SURPO15042 1029 aaKnown RBP13.42□□□□□ -0.26
HDAC3-214ENST00000495485 PLEKHG5O94827 1062 aa13.42□□□□□ -0.26
HDAC3-214ENST00000495485 CHRNA2Q15822 529 aa13.42□□□□□ -0.26
HDAC3-214ENST00000495485 CCDC146Q8IYE0 955 aa13.42□□□□□ -0.26
HDAC3-214ENST00000495485 MAP3K19Q56UN5 1328 aa13.41□□□□□ -0.26
HDAC3-214ENST00000495485 SPATA31A5Q5VU36 1347 aa13.41□□□□□ -0.26
HDAC3-214ENST00000495485 SPATA31A7Q8IWB4 1347 aa13.41□□□□□ -0.26
HDAC3-214ENST00000495485 ONECUT3O60422 494 aaPredicted RBP13.41□□□□□ -0.26
HDAC3-214ENST00000495485 POTEAQ6S8J7 498 aa13.41□□□□□ -0.26
HDAC3-214ENST00000495485 BARGINQ6ZT62 677 aa13.41□□□□□ -0.26
HDAC3-214ENST00000495485 PLEKHG2Q9H7P9 1386 aa13.41□□□□□ -0.26
HDAC3-214ENST00000495485 ERBB3P21860 1342 aa13.4□□□□□ -0.26
HDAC3-214ENST00000495485 E9PSI1 815 aa13.4□□□□□ -0.26
HDAC3-214ENST00000495485 PPM1GO15355 546 aaPredicted RBP13.4□□□□□ -0.26
HDAC3-214ENST00000495485 SOX12O15370 315 aa13.4□□□□□ -0.26
HDAC3-214ENST00000495485 FCHSD2O94868 740 aa13.4□□□□□ -0.26
HDAC3-214ENST00000495485 HOXC9P31274 260 aa13.4□□□□□ -0.26
HDAC3-214ENST00000495485 CCDC27Q2M243 656 aa13.4□□□□□ -0.26
HDAC3-214ENST00000495485 POLKQ9UBT6 870 aa13.4□□□□□ -0.26
HDAC3-214ENST00000495485 RCAN3Q9UKA8 241 aa13.4□□□□□ -0.26
HDAC3-214ENST00000495485 SPATA31A1Q5TZJ5 1347 aa13.39□□□□□ -0.27
HDAC3-214ENST00000495485 WDR63Q8IWG1 891 aa13.39□□□□□ -0.27
HDAC3-214ENST00000495485 TCP11L2Q8N4U5 519 aa13.39□□□□□ -0.27
HDAC3-214ENST00000495485 CARD10Q9BWT7 1032 aa13.39□□□□□ -0.27
HDAC3-214ENST00000495485 GLI3P10071 1580 aa13.39□□□□□ -0.27
HDAC3-214ENST00000495485 GOLGA6L2Q8N9W4 650 aaPredicted RBP13.38□□□□□ -0.27
HDAC3-214ENST00000495485 STRN4Q9NRL3 753 aa13.38□□□□□ -0.27
HDAC3-214ENST00000495485 CCDC9Q9Y3X0 531 aaKnown RBP13.38□□□□□ -0.27
HDAC3-214ENST00000495485 ZNF521Q96K83 1311 aa13.38□□□□□ -0.27
HDAC3-214ENST00000495485 COL3A1P02461 1466 aaPredicted RBP13.37□□□□□ -0.27
HDAC3-214ENST00000495485 ZBTB7CA1YPR0 619 aa13.37□□□□□ -0.27
HDAC3-214ENST00000495485 CSB-PGBD3P0DP91 1061 aa13.37□□□□□ -0.27
HDAC3-214ENST00000495485 TOM1L2Q6ZVM7 507 aa13.37□□□□□ -0.27
HDAC3-214ENST00000495485 ANKRD24Q8TF21 1146 aa13.37□□□□□ -0.27
HDAC3-214ENST00000495485 AXIN2Q9Y2T1 843 aa13.37□□□□□ -0.27
HDAC3-214ENST00000495485 EP400Q96L91 3159 aa13.37□□□□□ -0.27
HDAC3-214ENST00000495485 RNF123Q5XPI4 1314 aa13.37□□□□□ -0.27
HDAC3-214ENST00000495485 WNK3Q9BYP7 1800 aa13.36□□□□□ -0.27
HDAC3-214ENST00000495485 SLFN5Q08AF3 891 aa13.36□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms