RNA–Protein interactions for RNA: ENST00000493886.5

VCP-207, Transcript of valosin containing protein, humanhuman

TSL 2

Gene VCP, Length 2,942 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCP-207ENST00000493886 COG6Q9Y2V7 657 aa17.71■□□□□ 0.43
VCP-207ENST00000493886 HMOX1P09601 288 aa17.7■□□□□ 0.42
VCP-207ENST00000493886 USP6P35125 1406 aa17.7■□□□□ 0.42
VCP-207ENST00000493886 EXOSC9Q06265 439 aaKnown RBP17.69■□□□□ 0.42
VCP-207ENST00000493886 CEP170BQ9Y4F5 1589 aaPredicted RBP17.69■□□□□ 0.42
VCP-207ENST00000493886 PHACTR3Q96KR7 559 aa17.68■□□□□ 0.42
VCP-207ENST00000493886 XRN1Q8IZH2 1706 aaKnown RBP17.67■□□□□ 0.42
VCP-207ENST00000493886 RIMS1Q86UR5 1692 aaKnown RBP17.67■□□□□ 0.42
VCP-207ENST00000493886 SLC4A3P48751 1232 aa17.67■□□□□ 0.42
VCP-207ENST00000493886 CLUAP1Q96AJ1 413 aa17.67■□□□□ 0.42
VCP-207ENST00000493886 OVOS2A0A0J9YW53 1432 aa17.67■□□□□ 0.42
VCP-207ENST00000493886 OVOS2Q6IE36 1432 aa17.67■□□□□ 0.42
VCP-207ENST00000493886 RGS3P49796 1198 aa17.67■□□□□ 0.42
VCP-207ENST00000493886 NFE2L2Q16236 605 aa17.67■□□□□ 0.42
VCP-207ENST00000493886 BCL11BQ9C0K0 894 aaPredicted RBP17.67■□□□□ 0.42
VCP-207ENST00000493886 RLBP1P12271 317 aa17.66■□□□□ 0.42
VCP-207ENST00000493886 ZMYND15Q9H091 742 aa17.66■□□□□ 0.42
VCP-207ENST00000493886 TNNQ9UQP3 1299 aa17.66■□□□□ 0.42
VCP-207ENST00000493886 SSH2Q76I76 1423 aa17.65■□□□□ 0.42
VCP-207ENST00000493886 PMFBP1Q8TBY8 1022 aa17.65■□□□□ 0.42
VCP-207ENST00000493886 KCNA6P17658 529 aa17.64■□□□□ 0.41
VCP-207ENST00000493886 PIK3R4Q99570 1358 aa17.64■□□□□ 0.41
VCP-207ENST00000493886 AAMPQ13685 434 aa17.63■□□□□ 0.41
VCP-207ENST00000493886 ZKSCAN2Q63HK3 967 aa17.63■□□□□ 0.41
VCP-207ENST00000493886 SMC4Q9NTJ3 1288 aa17.63■□□□□ 0.41
VCP-207ENST00000493886 NALCNQ8IZF0 1738 aa17.62■□□□□ 0.41
VCP-207ENST00000493886 IGHDP01880 384 aa17.62■□□□□ 0.41
VCP-207ENST00000493886 RGPD8O14715 1765 aaPredicted RBP17.62■□□□□ 0.41
VCP-207ENST00000493886 TTC21AQ8NDW8 1320 aa17.62■□□□□ 0.41
VCP-207ENST00000493886 SSH1Q8WYL5 1049 aa17.62■□□□□ 0.41
VCP-207ENST00000493886 USP31Q70CQ4 1352 aa17.62■□□□□ 0.41
VCP-207ENST00000493886 NGDNQ8NEJ9 315 aaKnown RBP17.61■□□□□ 0.41
VCP-207ENST00000493886 CALD1Q05682 793 aaKnown RBP17.61■□□□□ 0.41
VCP-207ENST00000493886 EIF4A2Q14240 407 aaKnown RBP17.61■□□□□ 0.41
VCP-207ENST00000493886 FGD1P98174 961 aa17.6■□□□□ 0.41
VCP-207ENST00000493886 DZIP1LQ8IYY4 767 aaKnown RBP17.6■□□□□ 0.41
VCP-207ENST00000493886 ANKLE2Q86XL3 938 aa17.59■□□□□ 0.41
VCP-207ENST00000493886 THUMPD2Q9BTF0 503 aaKnown RBP17.59■□□□□ 0.41
VCP-207ENST00000493886 ANKARQ7Z5J8 1434 aa17.59■□□□□ 0.41
VCP-207ENST00000493886 MVPQ14764 893 aaKnown RBP17.59■□□□□ 0.41
VCP-207ENST00000493886 FTSJ3Q8IY81 847 aaKnown RBP17.59■□□□□ 0.41
VCP-207ENST00000493886 LMOD3Q0VAK6 560 aa17.58■□□□□ 0.4
VCP-207ENST00000493886 ZNF142P52746 1687 aaPredicted RBP17.58■□□□□ 0.4
VCP-207ENST00000493886 PEAK1Q9H792 1746 aa17.58■□□□□ 0.4
VCP-207ENST00000493886 DLG5Q8TDM6 1919 aa17.58■□□□□ 0.4
VCP-207ENST00000493886 ADAMTSL3P82987 1691 aa17.57■□□□□ 0.4
VCP-207ENST00000493886 TRIM27P14373 513 aa17.57■□□□□ 0.4
VCP-207ENST00000493886 VSIG10Q8N0Z9 540 aa17.57■□□□□ 0.4
VCP-207ENST00000493886 SOX12O15370 315 aa17.57■□□□□ 0.4
VCP-207ENST00000493886 GNAI1P63096 354 aa17.57■□□□□ 0.4
VCP-207ENST00000493886 HSP90AB2PQ58FF8 381 aa17.57■□□□□ 0.4
VCP-207ENST00000493886 IFT57Q9NWB7 429 aa17.57■□□□□ 0.4
VCP-207ENST00000493886 PCDHB15Q9Y5E8 787 aa17.57■□□□□ 0.4
VCP-207ENST00000493886 SULT6B1Q6IMI4 303 aa17.56■□□□□ 0.4
VCP-207ENST00000493886 AEBP1Q8IUX7 1158 aa17.56■□□□□ 0.4
VCP-207ENST00000493886 ALDH1L2Q3SY69 923 aa17.56■□□□□ 0.4
VCP-207ENST00000493886 ATF7IPQ6VMQ6 1270 aa17.56■□□□□ 0.4
VCP-207ENST00000493886 NOB1Q9ULX3 412 aaKnown RBP17.56■□□□□ 0.4
VCP-207ENST00000493886 FMN2Q9NZ56 1722 aa17.56■□□□□ 0.4
VCP-207ENST00000493886 KIF16BQ96L93 1317 aa17.55■□□□□ 0.4
VCP-207ENST00000493886 ZNF853P0CG23 659 aa17.55■□□□□ 0.4
VCP-207ENST00000493886 ZNF428Q96B54 188 aa17.54■□□□□ 0.4
VCP-207ENST00000493886 CHD2O14647 1828 aaKnown RBP17.54■□□□□ 0.4
VCP-207ENST00000493886 MAP3K19Q56UN5 1328 aa17.54■□□□□ 0.4
VCP-207ENST00000493886 SETD1BQ9UPS6 1966 aaKnown RBP17.54■□□□□ 0.4
VCP-207ENST00000493886 C8orf34Q49A92 452 aa17.54■□□□□ 0.4
VCP-207ENST00000493886 PIK3C2AO00443 1686 aa17.53■□□□□ 0.4
VCP-207ENST00000493886 MBIPQ9NS73 344 aa17.53■□□□□ 0.4
VCP-207ENST00000493886 FAM83GA6ND36 823 aa17.53■□□□□ 0.4
VCP-207ENST00000493886 IPO8O15397 1037 aaKnown RBP17.53■□□□□ 0.4
VCP-207ENST00000493886 RGPD1P0DJD0 1748 aa17.53■□□□□ 0.4
VCP-207ENST00000493886 FAM161AQ3B820 660 aa17.52■□□□□ 0.4
VCP-207ENST00000493886 CFAP44Q96MT7 982 aa17.52■□□□□ 0.4
VCP-207ENST00000493886 DDRGK1Q96HY6 314 aa17.52■□□□□ 0.4
VCP-207ENST00000493886 SBNO1A3KN83 1393 aa17.52■□□□□ 0.39
VCP-207ENST00000493886 VAMP4O75379 141 aa17.51■□□□□ 0.39
VCP-207ENST00000493886 FLT4P35916 1363 aa17.51■□□□□ 0.39
VCP-207ENST00000493886 BRPF1P55201 1214 aaPredicted RBP17.51■□□□□ 0.39
VCP-207ENST00000493886 ITPRIPQ8IWB1 547 aa17.51■□□□□ 0.39
VCP-207ENST00000493886 DDX19BQ9UMR2 479 aa17.51■□□□□ 0.39
VCP-207ENST00000493886 NLRP6P59044 892 aa17.51■□□□□ 0.39
VCP-207ENST00000493886 DCTN1Q14203 1278 aa17.51■□□□□ 0.39
VCP-207ENST00000493886 TSPYL6Q8N831 410 aa17.51■□□□□ 0.39
VCP-207ENST00000493886 RWDD1Q9H446 243 aaPredicted RBP17.51■□□□□ 0.39
VCP-207ENST00000493886 ARHGEF10O15013 1369 aa17.49■□□□□ 0.39
VCP-207ENST00000493886 TMEM57Q8N5G2 664 aa17.49■□□□□ 0.39
VCP-207ENST00000493886 AMPHP49418 695 aa17.49■□□□□ 0.39
VCP-207ENST00000493886 RBM10P98175 930 aaKnown RBP17.48■□□□□ 0.39
VCP-207ENST00000493886 ELL2O00472 640 aaPredicted RBP17.47■□□□□ 0.39
VCP-207ENST00000493886 TWISTNBQ3B726 338 aaPredicted RBP17.47■□□□□ 0.39
VCP-207ENST00000493886 MRPL50Q8N5N7 158 aaKnown RBP17.47■□□□□ 0.39
VCP-207ENST00000493886 RBM33Q96EV2 1170 aaKnown RBP17.47■□□□□ 0.39
VCP-207ENST00000493886 NUTM2GQ5VZR2 741 aa17.47■□□□□ 0.39
VCP-207ENST00000493886 PHF8Q9UPP1 1060 aa17.47■□□□□ 0.39
VCP-207ENST00000493886 C8orf58Q8NAV2 365 aa17.46■□□□□ 0.39
VCP-207ENST00000493886 ABTB2Q8N961 1025 aa17.46■□□□□ 0.39
VCP-207ENST00000493886 NPHP4O75161 1426 aaPredicted RBP17.46■□□□□ 0.39
VCP-207ENST00000493886 MARF1Q9Y4F3 1742 aaKnown RBP17.46■□□□□ 0.38
VCP-207ENST00000493886 USP54Q70EL1 1684 aa17.45■□□□□ 0.38
VCP-207ENST00000493886 PDZRN3Q9UPQ7 1066 aa17.45■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms