RNA–Protein interactions for RNA: ENST00000486515.1

UBR4-214, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 3

Gene UBR4, Length 536 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-214ENST00000486515 PLEKHG5O94827 1062 aa9.36□□□□□ -0.91
UBR4-214ENST00000486515 TNNT2P45379 298 aaPredicted RBP9.36□□□□□ -0.91
UBR4-214ENST00000486515 DNAJC5GQ8N7S2 189 aa9.36□□□□□ -0.91
UBR4-214ENST00000486515 KCNH5Q8NCM2 988 aa9.36□□□□□ -0.91
UBR4-214ENST00000486515 CFAP53Q96M91 514 aa9.36□□□□□ -0.91
UBR4-214ENST00000486515 ITSN1Q15811 1721 aa9.36□□□□□ -0.91
UBR4-214ENST00000486515 ARHGEF10O15013 1369 aa9.36□□□□□ -0.91
UBR4-214ENST00000486515 PARD3Q8TEW0 1356 aa9.36□□□□□ -0.91
UBR4-214ENST00000486515 NPC1L1Q9UHC9 1359 aa9.36□□□□□ -0.91
UBR4-214ENST00000486515 FYB1O15117 783 aa9.35□□□□□ -0.91
UBR4-214ENST00000486515 AMER1Q5JTC6 1135 aaPredicted RBP9.35□□□□□ -0.91
UBR4-214ENST00000486515 NUTM2GQ5VZR2 741 aa9.35□□□□□ -0.91
UBR4-214ENST00000486515 NME9Q86XW9 330 aa9.35□□□□□ -0.91
UBR4-214ENST00000486515 FHDC1Q9C0D6 1143 aaPredicted RBP9.35□□□□□ -0.91
UBR4-214ENST00000486515 PRKRIP1Q9H875 184 aaPredicted RBP9.35□□□□□ -0.91
UBR4-214ENST00000486515 CCDC9Q9Y3X0 531 aaKnown RBP9.35□□□□□ -0.91
UBR4-214ENST00000486515 SBNO1A3KN83 1393 aa9.35□□□□□ -0.91
UBR4-214ENST00000486515 PPM1GO15355 546 aaPredicted RBP9.34□□□□□ -0.91
UBR4-214ENST00000486515 SOX12O15370 315 aa9.34□□□□□ -0.91
UBR4-214ENST00000486515 APLP1P51693 650 aa9.34□□□□□ -0.91
UBR4-214ENST00000486515 FAM182BQ5T319 152 aa9.34□□□□□ -0.91
UBR4-214ENST00000486515 KIF1AQ12756 1690 aa9.34□□□□□ -0.91
UBR4-214ENST00000486515 SOS2Q07890 1332 aaPredicted RBP9.33□□□□□ -0.92
UBR4-214ENST00000486515 MYBBP1AQ9BQG0 1328 aaKnown RBP9.33□□□□□ -0.92
UBR4-214ENST00000486515 AKAP12Q02952 1782 aa9.33□□□□□ -0.92
UBR4-214ENST00000486515 ZBTB7CA1YPR0 619 aa9.33□□□□□ -0.92
UBR4-214ENST00000486515 GPR162Q16538 588 aa9.33□□□□□ -0.92
UBR4-214ENST00000486515 RGPD1P0DJD0 1748 aa9.33□□□□□ -0.92
UBR4-214ENST00000486515 SPATA31A3Q5VYP0 1347 aa9.32□□□□□ -0.92
UBR4-214ENST00000486515 SHANK3Q9BYB0 1731 aa9.32□□□□□ -0.92
UBR4-214ENST00000486515 APBA3O96018 575 aa9.32□□□□□ -0.92
UBR4-214ENST00000486515 AMPHP49418 695 aa9.32□□□□□ -0.92
UBR4-214ENST00000486515 VPS72Q15906 364 aa9.32□□□□□ -0.92
UBR4-214ENST00000486515 NUDCQ9Y266 331 aa9.32□□□□□ -0.92
UBR4-214ENST00000486515 CD163L1Q9NR16 1453 aa9.32□□□□□ -0.92
UBR4-214ENST00000486515 NRKQ7Z2Y5 1582 aa9.32□□□□□ -0.92
UBR4-214ENST00000486515 TNS3Q68CZ2 1445 aa9.31□□□□□ -0.92
UBR4-214ENST00000486515 SLIT2O94813 1529 aa9.31□□□□□ -0.92
UBR4-214ENST00000486515 MON2Q7Z3U7 1717 aa9.31□□□□□ -0.92
UBR4-214ENST00000486515 GPBP1L1Q9HC44 474 aaPredicted RBP9.31□□□□□ -0.92
UBR4-214ENST00000486515 MRS2Q9HD23 443 aa9.31□□□□□ -0.92
UBR4-214ENST00000486515 CCER2I3L3R5 266 aa9.3□□□□□ -0.92
UBR4-214ENST00000486515 TRIM37O94972 964 aa9.3□□□□□ -0.92
UBR4-214ENST00000486515 NEFMP07197 916 aa9.3□□□□□ -0.92
UBR4-214ENST00000486515 WDR43Q15061 677 aaKnown RBP eCLIP9.3□□□□□ -0.92
UBR4-214ENST00000486515 MIER1Q8N108 512 aa9.3□□□□□ -0.92
UBR4-214ENST00000486515 KIF20BQ96Q89 1820 aa9.3□□□□□ -0.92
UBR4-214ENST00000486515 TNKS1BP1Q9C0C2 1729 aaKnown RBP9.3□□□□□ -0.92
UBR4-214ENST00000486515 AATKQ6ZMQ8 1374 aa9.29□□□□□ -0.92
UBR4-214ENST00000486515 USP31Q70CQ4 1352 aa9.29□□□□□ -0.92
UBR4-214ENST00000486515 ZBTB7AO95365 584 aa9.29□□□□□ -0.92
UBR4-214ENST00000486515 GCP02774 474 aa9.29□□□□□ -0.92
UBR4-214ENST00000486515 PPP2R1AP30153 589 aa9.29□□□□□ -0.92
UBR4-214ENST00000486515 PTGER2P43116 358 aa9.29□□□□□ -0.92
UBR4-214ENST00000486515 MTHFSP49914 203 aa9.28□□□□□ -0.92
UBR4-214ENST00000486515 FAM98CQ17RN3 349 aaKnown RBP9.28□□□□□ -0.92
UBR4-214ENST00000486515 SSH2Q76I76 1423 aa9.28□□□□□ -0.92
UBR4-214ENST00000486515 COL22A1Q8NFW1 1626 aaPredicted RBP9.27□□□□□ -0.92
UBR4-214ENST00000486515 ZC3H6P61129 1189 aaKnown RBP9.27□□□□□ -0.93
UBR4-214ENST00000486515 RRS1Q15050 365 aaKnown RBP9.27□□□□□ -0.93
UBR4-214ENST00000486515 FAM161AQ3B820 660 aa9.27□□□□□ -0.93
UBR4-214ENST00000486515 PNNQ9H307 717 aaKnown RBP9.27□□□□□ -0.93
UBR4-214ENST00000486515 PRDM11Q9NQV5 511 aa9.27□□□□□ -0.93
UBR4-214ENST00000486515 ATF5Q9Y2D1 282 aaPredicted RBP9.27□□□□□ -0.93
UBR4-214ENST00000486515 ATP10DQ9P241 1426 aa9.27□□□□□ -0.93
UBR4-214ENST00000486515 PXDNQ92626 1479 aa9.27□□□□□ -0.93
UBR4-214ENST00000486515 TNS1Q9HBL0 1735 aaKnown RBP9.26□□□□□ -0.93
UBR4-214ENST00000486515 ANKRD26Q9UPS8 1709 aa9.26□□□□□ -0.93
UBR4-214ENST00000486515 MARF1Q9Y4F3 1742 aaKnown RBP9.26□□□□□ -0.93
UBR4-214ENST00000486515 SMG6Q86US8 1419 aaKnown RBP9.26□□□□□ -0.93
UBR4-214ENST00000486515 DIAPH1O60610 1272 aaKnown RBP9.26□□□□□ -0.93
UBR4-214ENST00000486515 CSB-PGBD3P0DP91 1061 aa9.26□□□□□ -0.93
UBR4-214ENST00000486515 EVA1CP58658 441 aa9.26□□□□□ -0.93
UBR4-214ENST00000486515 JMYQ8N9B5 988 aa9.26□□□□□ -0.93
UBR4-214ENST00000486515 CABLES1Q8TDN4 633 aa9.26□□□□□ -0.93
UBR4-214ENST00000486515 GOLGB1Q14789 3259 aaKnown RBP9.25□□□□□ -0.93
UBR4-214ENST00000486515 TRPM3Q9HCF6 1732 aaPredicted RBP9.25□□□□□ -0.93
UBR4-214ENST00000486515 OVOS2A0A0J9YW53 1432 aa9.25□□□□□ -0.93
UBR4-214ENST00000486515 TNS2Q63HR2 1409 aa9.25□□□□□ -0.93
UBR4-214ENST00000486515 OVOS2Q6IE36 1432 aa9.25□□□□□ -0.93
UBR4-214ENST00000486515 U2SURPO15042 1029 aaKnown RBP9.25□□□□□ -0.93
UBR4-214ENST00000486515 POLKQ9UBT6 870 aa9.25□□□□□ -0.93
UBR4-214ENST00000486515 USP19O94966 1318 aa9.25□□□□□ -0.93
UBR4-214ENST00000486515 FLT4P35916 1363 aa9.24□□□□□ -0.93
UBR4-214ENST00000486515 KIF24Q5T7B8 1368 aa9.24□□□□□ -0.93
UBR4-214ENST00000486515 PIK3C2AO00443 1686 aa9.24□□□□□ -0.93
UBR4-214ENST00000486515 FAM9BQ8IZU0 186 aa9.24□□□□□ -0.93
UBR4-214ENST00000486515 ZNF526Q8TF50 670 aaPredicted RBP9.24□□□□□ -0.93
UBR4-214ENST00000486515 KLRG1Q96E93 195 aa9.24□□□□□ -0.93
UBR4-214ENST00000486515 PDGFDQ9GZP0 370 aaPredicted RBP9.24□□□□□ -0.93
UBR4-214ENST00000486515 EMILIN1Q9Y6C2 1016 aa9.24□□□□□ -0.93
UBR4-214ENST00000486515 MAP3K19Q56UN5 1328 aa9.24□□□□□ -0.93
UBR4-214ENST00000486515 U2AF1L5P0DN76 240 aaPredicted RBP9.23□□□□□ -0.93
UBR4-214ENST00000486515 HOXC9P31274 260 aa9.23□□□□□ -0.93
UBR4-214ENST00000486515 U2AF1Q01081 240 aaKnown RBP eCLIP9.23□□□□□ -0.93
UBR4-214ENST00000486515 FAM196AQ6ZSG2 479 aa9.23□□□□□ -0.93
UBR4-214ENST00000486515 ARHGEF25Q86VW2 580 aa9.23□□□□□ -0.93
UBR4-214ENST00000486515 IP6K1Q92551 441 aa9.23□□□□□ -0.93
UBR4-214ENST00000486515 LTV1Q96GA3 475 aaPredicted RBP9.23□□□□□ -0.93
UBR4-214ENST00000486515 RTL1A6NKG5 1358 aa9.23□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms