RNA–Protein interactions for RNA: ENST00000482217.1

VPS41-212, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 951 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-212ENST00000482217 GLMNQ92990 594 aa6.75□□□□□ -1.33
VPS41-212ENST00000482217 CCDC97Q96F63 343 aaPredicted RBP6.75□□□□□ -1.33
VPS41-212ENST00000482217 CALR3Q96L12 384 aaKnown RBP6.75□□□□□ -1.33
VPS41-212ENST00000482217 EIF4G2P78344 907 aaKnown RBP eCLIP6.74□□□□□ -1.33
VPS41-212ENST00000482217 PTK2Q05397 1052 aa6.74□□□□□ -1.33
VPS41-212ENST00000482217 AGERQ15109 404 aa6.74□□□□□ -1.33
VPS41-212ENST00000482217 SH3RF1Q7Z6J0 888 aa6.74□□□□□ -1.33
VPS41-212ENST00000482217 ZNF592Q92610 1267 aa6.74□□□□□ -1.33
VPS41-212ENST00000482217 ALG2Q9H553 416 aa6.74□□□□□ -1.33
VPS41-212ENST00000482217 AAASQ9NRG9 546 aa6.74□□□□□ -1.33
VPS41-212ENST00000482217 WASF2Q9Y6W5 498 aa6.74□□□□□ -1.33
VPS41-212ENST00000482217 FBXO45P0C2W1 286 aa6.73□□□□□ -1.33
VPS41-212ENST00000482217 HDGFL1Q5TGJ6 251 aa6.73□□□□□ -1.33
VPS41-212ENST00000482217 SH3BP5LQ7L8J4 393 aa6.73□□□□□ -1.33
VPS41-212ENST00000482217 FOXJ1Q92949 421 aa6.73□□□□□ -1.33
VPS41-212ENST00000482217 CDK15Q96Q40 435 aa6.73□□□□□ -1.33
VPS41-212ENST00000482217 MCCD1P59942 119 aaPredicted RBP6.72□□□□□ -1.33
VPS41-212ENST00000482217 SEMA3FQ13275 785 aa6.72□□□□□ -1.33
VPS41-212ENST00000482217 TRMT44Q8IYL2 757 aaKnown RBP6.72□□□□□ -1.33
VPS41-212ENST00000482217 ARID3AQ99856 593 aa6.72□□□□□ -1.33
VPS41-212ENST00000482217 C1QTNF2Q9BXJ5 285 aa6.72□□□□□ -1.33
VPS41-212ENST00000482217 ADH1CP00326 375 aa6.71□□□□□ -1.34
VPS41-212ENST00000482217 ADAMTS19Q8TE59 1207 aa6.71□□□□□ -1.34
VPS41-212ENST00000482217 HPS1Q92902 700 aa6.71□□□□□ -1.34
VPS41-212ENST00000482217 MAP4K5Q9Y4K4 846 aa6.71□□□□□ -1.34
VPS41-212ENST00000482217 TLL2Q9Y6L7 1015 aa6.71□□□□□ -1.34
VPS41-212ENST00000482217 ST8SIA5O15466 376 aa6.7□□□□□ -1.34
VPS41-212ENST00000482217 NR5A1Q13285 461 aa6.7□□□□□ -1.34
VPS41-212ENST00000482217 C4orf48Q5BLP8 95 aa6.7□□□□□ -1.34
VPS41-212ENST00000482217 ARHGAP9Q9BRR9 750 aa6.7□□□□□ -1.34
VPS41-212ENST00000482217 CDV3Q9UKY7 258 aaKnown RBP6.7□□□□□ -1.34
VPS41-212ENST00000482217 ZNF787Q6DD87 383 aa6.69□□□□□ -1.34
VPS41-212ENST00000482217 OCSTAMPQ9BR26 566 aa6.69□□□□□ -1.34
VPS41-212ENST00000482217 MAGEB6P1A0A0J9YX57 407 aa6.68□□□□□ -1.34
VPS41-212ENST00000482217 NNTQ13423 1086 aa6.68□□□□□ -1.34
VPS41-212ENST00000482217 ZBTB33Q86T24 672 aa6.68□□□□□ -1.34
VPS41-212ENST00000482217 ARID5BQ14865 1188 aa6.67□□□□□ -1.34
VPS41-212ENST00000482217 ERFEQ4G0M1 354 aa6.67□□□□□ -1.34
VPS41-212ENST00000482217 ADAM32Q8TC27 787 aa6.67□□□□□ -1.34
VPS41-212ENST00000482217 CAPN5O15484 640 aaPredicted RBP6.66□□□□□ -1.34
VPS41-212ENST00000482217 VASH1Q7L8A9 365 aaPredicted RBP6.66□□□□□ -1.34
VPS41-212ENST00000482217 NFATC2IPQ8NCF5 419 aa6.66□□□□□ -1.34
VPS41-212ENST00000482217 SLC10A4Q96EP9 437 aa6.66□□□□□ -1.34
VPS41-212ENST00000482217 CARD14Q9BXL6 1004 aa6.66□□□□□ -1.34
VPS41-212ENST00000482217 SENP2Q9HC62 589 aa6.66□□□□□ -1.34
VPS41-212ENST00000482217 ATP13A2Q9NQ11 1180 aa6.66□□□□□ -1.34
VPS41-212ENST00000482217 PCDHB9Q9Y5E1 797 aa6.66□□□□□ -1.34
VPS41-212ENST00000482217 GRM5P41594 1212 aa6.65□□□□□ -1.34
VPS41-212ENST00000482217 KIFC2Q96AC6 838 aa6.65□□□□□ -1.34
VPS41-212ENST00000482217 PPP1R12CQ9BZL4 782 aa6.65□□□□□ -1.34
VPS41-212ENST00000482217 PALM3A6NDB9 673 aaPredicted RBP6.64□□□□□ -1.35
VPS41-212ENST00000482217 PPP1R15AO75807 674 aaPredicted RBP6.64□□□□□ -1.35
VPS41-212ENST00000482217 FSHRP23945 695 aa6.64□□□□□ -1.35
VPS41-212ENST00000482217 NBPF20Q3BBV1 942 aa6.64□□□□□ -1.35
VPS41-212ENST00000482217 DZIP3Q86Y13 1208 aaKnown RBP6.64□□□□□ -1.35
VPS41-212ENST00000482217 UCN2Q96RP3 112 aa6.64□□□□□ -1.35
VPS41-212ENST00000482217 CEP126Q9P2H0 1117 aa6.64□□□□□ -1.35
VPS41-212ENST00000482217 TIMP2P16035 220 aa6.63□□□□□ -1.35
VPS41-212ENST00000482217 WDR4P57081 412 aaKnown RBP6.63□□□□□ -1.35
VPS41-212ENST00000482217 KLF16Q9BXK1 252 aaPredicted RBP6.63□□□□□ -1.35
VPS41-212ENST00000482217 DACH1Q9UI36 760 aa6.63□□□□□ -1.35
VPS41-212ENST00000482217 EMILIN1Q9Y6C2 1016 aa6.63□□□□□ -1.35
VPS41-212ENST00000482217 C11orf95C9JLR9 678 aaPredicted RBP6.62□□□□□ -1.35
VPS41-212ENST00000482217 ATP9BO43861 1147 aa6.62□□□□□ -1.35
VPS41-212ENST00000482217 IGSF3O75054 1194 aa6.62□□□□□ -1.35
VPS41-212ENST00000482217 NR3C2P08235 984 aa6.62□□□□□ -1.35
VPS41-212ENST00000482217 DHX9Q08211 1270 aaKnown RBP6.62□□□□□ -1.35
VPS41-212ENST00000482217 SLFNL1Q499Z3 407 aa6.62□□□□□ -1.35
VPS41-212ENST00000482217 CFAP70Q5T0N1 1121 aa6.62□□□□□ -1.35
VPS41-212ENST00000482217 CCDC125Q86Z20 511 aa6.62□□□□□ -1.35
VPS41-212ENST00000482217 CCDC116Q8IYX3 515 aa6.62□□□□□ -1.35
VPS41-212ENST00000482217 TRIM52Q96A61 297 aa6.62□□□□□ -1.35
VPS41-212ENST00000482217 TRIM47Q96LD4 638 aa6.62□□□□□ -1.35
VPS41-212ENST00000482217 GMPR2Q9P2T1 348 aaKnown RBP6.62□□□□□ -1.35
VPS41-212ENST00000482217 TFIP11Q9UBB9 837 aaKnown RBP6.62□□□□□ -1.35
VPS41-212ENST00000482217 LZTS3O60299 673 aaPredicted RBP6.61□□□□□ -1.35
VPS41-212ENST00000482217 RNF20Q5VTR2 975 aa6.61□□□□□ -1.35
VPS41-212ENST00000482217 TBC1D9Q6ZT07 1266 aa6.61□□□□□ -1.35
VPS41-212ENST00000482217 PHTF2Q8N3S3 785 aa6.61□□□□□ -1.35
VPS41-212ENST00000482217 KCTD15Q96SI1 283 aaPredicted RBP6.61□□□□□ -1.35
VPS41-212ENST00000482217 MAFBQ9Y5Q3 323 aaPredicted RBP6.61□□□□□ -1.35
VPS41-212ENST00000482217 POTECB2RU33 542 aa6.6□□□□□ -1.35
VPS41-212ENST00000482217 ZIC2O95409 532 aaPredicted RBP6.6□□□□□ -1.35
VPS41-212ENST00000482217 LMOD1P29536 600 aaPredicted RBP6.6□□□□□ -1.35
VPS41-212ENST00000482217 SCARF1Q14162 830 aa6.6□□□□□ -1.35
VPS41-212ENST00000482217 RNF135Q8IUD6 432 aa6.6□□□□□ -1.35
VPS41-212ENST00000482217 PLEKHM2Q8IWE5 1019 aa6.6□□□□□ -1.35
VPS41-212ENST00000482217 SEPT12Q8IYM1 358 aa6.6□□□□□ -1.35
VPS41-212ENST00000482217 PBXIP1Q96AQ6 731 aa6.6□□□□□ -1.35
VPS41-212ENST00000482217 ITPKCQ96DU7 683 aa6.6□□□□□ -1.35
VPS41-212ENST00000482217 PGPEP1Q9NXJ5 209 aa6.6□□□□□ -1.35
VPS41-212ENST00000482217 CHIC2Q9UKJ5 165 aa6.6□□□□□ -1.35
VPS41-212ENST00000482217 ACIN1Q9UKV3 1341 aaKnown RBP6.59□□□□□ -1.35
VPS41-212ENST00000482217 PIK3CDO00329 1044 aa6.59□□□□□ -1.35
VPS41-212ENST00000482217 SKIP12755 728 aa6.59□□□□□ -1.35
VPS41-212ENST00000482217 MAP7D1Q3KQU3 841 aa6.59□□□□□ -1.35
VPS41-212ENST00000482217 USP17L5A8MUK1 530 aa6.58□□□□□ -1.36
VPS41-212ENST00000482217 ESPNB1AK53 854 aa6.58□□□□□ -1.36
VPS41-212ENST00000482217 UPP2O95045 317 aa6.58□□□□□ -1.36
VPS41-212ENST00000482217 RFX1P22670 979 aa6.58□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms