RNA–Protein interactions for RNA: ENST00000482158.1

SF3B1-210, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 772 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-210ENST00000482158 SLC10A4Q96EP9 437 aa10.9□□□□□ -0.66
SF3B1-210ENST00000482158 ESPNB1AK53 854 aa10.89□□□□□ -0.67
SF3B1-210ENST00000482158 RNF135Q8IUD6 432 aa10.89□□□□□ -0.67
SF3B1-210ENST00000482158 CCDC85AQ96PX6 553 aaPredicted RBP10.89□□□□□ -0.67
SF3B1-210ENST00000482158 USP17L5A8MUK1 530 aa10.88□□□□□ -0.67
SF3B1-210ENST00000482158 KANK4Q5T7N3 995 aaPredicted RBP10.88□□□□□ -0.67
SF3B1-210ENST00000482158 TRAF7Q6Q0C0 670 aa10.88□□□□□ -0.67
SF3B1-210ENST00000482158 PLEKHM2Q8IWE5 1019 aa10.88□□□□□ -0.67
SF3B1-210ENST00000482158 USP17L3A6NCW0 530 aa10.87□□□□□ -0.67
SF3B1-210ENST00000482158 USP17L4A6NCW7 530 aa10.87□□□□□ -0.67
SF3B1-210ENST00000482158 SIAH2O43255 324 aa10.87□□□□□ -0.67
SF3B1-210ENST00000482158 USP17L2Q6R6M4 530 aa10.87□□□□□ -0.67
SF3B1-210ENST00000482158 USP17L1Q7RTZ2 530 aa10.87□□□□□ -0.67
SF3B1-210ENST00000482158 DEPDC4Q8N2C3 294 aa10.87□□□□□ -0.67
SF3B1-210ENST00000482158 PLPP7Q8NBV4 271 aa10.87□□□□□ -0.67
SF3B1-210ENST00000482158 EHBP1Q8NDI1 1231 aa10.87□□□□□ -0.67
SF3B1-210ENST00000482158 CDCA8Q53HL2 280 aa10.86□□□□□ -0.67
SF3B1-210ENST00000482158 SPRYD7Q5W111 196 aa10.86□□□□□ -0.67
SF3B1-210ENST00000482158 MAP4K5Q9Y4K4 846 aa10.86□□□□□ -0.67
SF3B1-210ENST00000482158 CDK15Q96Q40 435 aa10.85□□□□□ -0.67
SF3B1-210ENST00000482158 KCTD15Q96SI1 283 aaPredicted RBP10.85□□□□□ -0.67
SF3B1-210ENST00000482158 CDV3Q9UKY7 258 aaKnown RBP10.85□□□□□ -0.67
SF3B1-210ENST00000482158 WNT7AO00755 349 aa10.84□□□□□ -0.67
SF3B1-210ENST00000482158 NCOA4Q13772 614 aa10.84□□□□□ -0.67
SF3B1-210ENST00000482158 NBPF20Q3BBV1 942 aa10.84□□□□□ -0.67
SF3B1-210ENST00000482158 MAP7D1Q3KQU3 841 aa10.83□□□□□ -0.68
SF3B1-210ENST00000482158 MPNDQ8N594 471 aa10.83□□□□□ -0.68
SF3B1-210ENST00000482158 RETREG2Q8NC44 543 aa10.83□□□□□ -0.68
SF3B1-210ENST00000482158 CDCA7Q9BWT1 371 aaPredicted RBP10.83□□□□□ -0.68
SF3B1-210ENST00000482158 TLL2Q9Y6L7 1015 aa10.83□□□□□ -0.68
SF3B1-210ENST00000482158 GRM5P41594 1212 aa10.82□□□□□ -0.68
SF3B1-210ENST00000482158 MRGPRX2Q96LB1 330 aa10.82□□□□□ -0.68
SF3B1-210ENST00000482158 INTS6LQ5JSJ4 861 aaKnown RBP10.81□□□□□ -0.68
SF3B1-210ENST00000482158 RNF20Q5VTR2 975 aa10.81□□□□□ -0.68
SF3B1-210ENST00000482158 VASH1Q7L8A9 365 aaPredicted RBP10.81□□□□□ -0.68
SF3B1-210ENST00000482158 ZNF598Q86UK7 904 aaKnown RBP10.81□□□□□ -0.68
SF3B1-210ENST00000482158 SEPT12Q8IYM1 358 aa10.81□□□□□ -0.68
SF3B1-210ENST00000482158 VRTNQ9H8Y1 702 aa10.81□□□□□ -0.68
SF3B1-210ENST00000482158 PKD2L1Q9P0L9 805 aa10.81□□□□□ -0.68
SF3B1-210ENST00000482158 MKRN1Q9UHC7 482 aaKnown RBP10.81□□□□□ -0.68
SF3B1-210ENST00000482158 DOLKQ9UPQ8 538 aa10.81□□□□□ -0.68
SF3B1-210ENST00000482158 LZTS3O60299 673 aaPredicted RBP10.8□□□□□ -0.68
SF3B1-210ENST00000482158 ATG7O95352 703 aa10.8□□□□□ -0.68
SF3B1-210ENST00000482158 ARID5BQ14865 1188 aa10.8□□□□□ -0.68
SF3B1-210ENST00000482158 ZNF697Q5TEC3 545 aa10.8□□□□□ -0.68
SF3B1-210ENST00000482158 PRKD2Q9BZL6 878 aa10.8□□□□□ -0.68
SF3B1-210ENST00000482158 V9GY48 417 aaPredicted RBP10.79□□□□□ -0.68
SF3B1-210ENST00000482158 ACIN1Q9UKV3 1341 aaKnown RBP10.79□□□□□ -0.68
SF3B1-210ENST00000482158 RAB15P59190 212 aa10.78□□□□□ -0.68
SF3B1-210ENST00000482158 PCDHB11Q9Y5F2 797 aa10.78□□□□□ -0.68
SF3B1-210ENST00000482158 ERVH48-1M5A8F1 160 aa10.77□□□□□ -0.69
SF3B1-210ENST00000482158 FSHRP23945 695 aa10.77□□□□□ -0.69
SF3B1-210ENST00000482158 EML3Q32P44 896 aa10.77□□□□□ -0.69
SF3B1-210ENST00000482158 CRTC2Q53ET0 693 aaPredicted RBP10.77□□□□□ -0.69
SF3B1-210ENST00000482158 ADH1CP00326 375 aa10.76□□□□□ -0.69
SF3B1-210ENST00000482158 OXLD1Q5BKU9 147 aa10.76□□□□□ -0.69
SF3B1-210ENST00000482158 CCDC125Q86Z20 511 aa10.76□□□□□ -0.69
SF3B1-210ENST00000482158 ZMIZ1Q9ULJ6 1067 aa10.76□□□□□ -0.69
SF3B1-210ENST00000482158 ATP5J2-PTCD1G3V325 749 aa10.75□□□□□ -0.69
SF3B1-210ENST00000482158 SCTRP47872 440 aa10.75□□□□□ -0.69
SF3B1-210ENST00000482158 CLDN10P78369 228 aa10.75□□□□□ -0.69
SF3B1-210ENST00000482158 PTK7Q13308 1070 aa10.75□□□□□ -0.69
SF3B1-210ENST00000482158 ELOAQ14241 798 aaKnown RBP10.75□□□□□ -0.69
SF3B1-210ENST00000482158 CARNS1A5YM72 827 aa10.74□□□□□ -0.69
SF3B1-210ENST00000482158 FAM196BA6NMK8 535 aa10.74□□□□□ -0.69
SF3B1-210ENST00000482158 GDF9O60383 454 aa10.74□□□□□ -0.69
SF3B1-210ENST00000482158 DKK1O94907 266 aa10.74□□□□□ -0.69
SF3B1-210ENST00000482158 NR3C2P08235 984 aa10.74□□□□□ -0.69
SF3B1-210ENST00000482158 FOXC1Q12948 553 aa10.74□□□□□ -0.69
SF3B1-210ENST00000482158 TRAIPQ9BWF2 469 aa10.74□□□□□ -0.69
SF3B1-210ENST00000482158 TMPRSS4Q9NRS4 437 aa10.74□□□□□ -0.69
SF3B1-210ENST00000482158 NOD1Q9Y239 953 aa10.74□□□□□ -0.69
SF3B1-210ENST00000482158 USP17L15C9J2P7 530 aa10.73□□□□□ -0.69
SF3B1-210ENST00000482158 USP17L10C9JJH3 530 aa10.73□□□□□ -0.69
SF3B1-210ENST00000482158 USP17L13C9JLJ4 530 aa10.73□□□□□ -0.69
SF3B1-210ENST00000482158 USP17L12C9JPN9 530 aa10.73□□□□□ -0.69
SF3B1-210ENST00000482158 USP17L11C9JVI0 530 aa10.73□□□□□ -0.69
SF3B1-210ENST00000482158 USP17L21D6R901 530 aa10.73□□□□□ -0.69
SF3B1-210ENST00000482158 USP17L18D6R9N7 530 aa10.73□□□□□ -0.69
SF3B1-210ENST00000482158 USP17L22D6RA61 530 aa10.73□□□□□ -0.69
SF3B1-210ENST00000482158 USP17L17D6RBQ6 530 aa10.73□□□□□ -0.69
SF3B1-210ENST00000482158 USP17L19D6RCP7 530 aa10.73□□□□□ -0.69
SF3B1-210ENST00000482158 USP17L20D6RJB6 530 aa10.73□□□□□ -0.69
SF3B1-210ENST00000482158 ZBTB7BO15156 539 aaPredicted RBP10.73□□□□□ -0.69
SF3B1-210ENST00000482158 USP17L24Q0WX57 530 aa10.73□□□□□ -0.69
SF3B1-210ENST00000482158 TRIM67Q6ZTA4 783 aa10.73□□□□□ -0.69
SF3B1-210ENST00000482158 PCDHGA11Q9Y5H2 935 aa10.73□□□□□ -0.69
SF3B1-210ENST00000482158 TMEM88BA6NKF7 163 aa10.72□□□□□ -0.69
SF3B1-210ENST00000482158 PDIA4P13667 645 aaKnown RBP10.72□□□□□ -0.69
SF3B1-210ENST00000482158 RASA1P20936 1047 aa10.72□□□□□ -0.69
SF3B1-210ENST00000482158 NR5A1Q13285 461 aa10.72□□□□□ -0.69
SF3B1-210ENST00000482158 OGFOD1Q8N543 542 aa10.72□□□□□ -0.69
SF3B1-210ENST00000482158 KIAA1024Q9UPX6 916 aa10.72□□□□□ -0.69
SF3B1-210ENST00000482158 ERVK-9P63128 1117 aa10.71□□□□□ -0.69
SF3B1-210ENST00000482158 USP4Q13107 963 aa10.71□□□□□ -0.69
SF3B1-210ENST00000482158 STK32AQ8WU08 396 aa10.71□□□□□ -0.69
SF3B1-210ENST00000482158 NOVA2Q9UNW9 492 aaKnown RBP10.71□□□□□ -0.69
SF3B1-210ENST00000482158 ALDH1A1P00352 501 aa10.7□□□□□ -0.7
SF3B1-210ENST00000482158 CSB-PGBD3P0DP91 1061 aa10.7□□□□□ -0.7
SF3B1-210ENST00000482158 GTF2IP78347 998 aa10.7□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms