RNA–Protein interactions for RNA: ENST00000476413.1

VPS50-212, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 5

Gene VPS50, Length 381 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-212ENST00000476413 BPHLQ86WA6 291 aaPredicted RBP10.87□□□□□ -0.67
VPS50-212ENST00000476413 PLPP7Q8NBV4 271 aa10.87□□□□□ -0.67
VPS50-212ENST00000476413 HCSTQ9UBK5 93 aa10.87□□□□□ -0.67
VPS50-212ENST00000476413 RNF223E7ERA6 249 aa10.86□□□□□ -0.67
VPS50-212ENST00000476413 PDE4CQ08493 712 aa10.86□□□□□ -0.67
VPS50-212ENST00000476413 NCOA4Q13772 614 aa10.86□□□□□ -0.67
VPS50-212ENST00000476413 ELOAQ14241 798 aaKnown RBP10.86□□□□□ -0.67
VPS50-212ENST00000476413 AEBP1Q8IUX7 1158 aa10.86□□□□□ -0.67
VPS50-212ENST00000476413 DZIP3Q86Y13 1208 aaKnown RBP10.85□□□□□ -0.67
VPS50-212ENST00000476413 RNF166Q96A37 237 aaPredicted RBP10.85□□□□□ -0.67
VPS50-212ENST00000476413 CCDC85AQ96PX6 553 aaPredicted RBP10.85□□□□□ -0.67
VPS50-212ENST00000476413 CRTC2Q53ET0 693 aaPredicted RBP10.84□□□□□ -0.67
VPS50-212ENST00000476413 MKRN1Q9UHC7 482 aaKnown RBP10.84□□□□□ -0.67
VPS50-212ENST00000476413 GIGYF1O75420 1035 aaPredicted RBP10.83□□□□□ -0.68
VPS50-212ENST00000476413 TRMT44Q8IYL2 757 aaKnown RBP10.83□□□□□ -0.68
VPS50-212ENST00000476413 ANKLE1Q8NAG6 615 aa10.83□□□□□ -0.68
VPS50-212ENST00000476413 FAM196BA6NMK8 535 aa10.82□□□□□ -0.68
VPS50-212ENST00000476413 AGERQ15109 404 aa10.82□□□□□ -0.68
VPS50-212ENST00000476413 MAP7D1Q3KQU3 841 aa10.82□□□□□ -0.68
VPS50-212ENST00000476413 STK32AQ8WU08 396 aa10.82□□□□□ -0.68
VPS50-212ENST00000476413 ESPNB1AK53 854 aa10.81□□□□□ -0.68
VPS50-212ENST00000476413 USP17L15C9J2P7 530 aa10.81□□□□□ -0.68
VPS50-212ENST00000476413 USP17L10C9JJH3 530 aa10.81□□□□□ -0.68
VPS50-212ENST00000476413 USP17L13C9JLJ4 530 aa10.81□□□□□ -0.68
VPS50-212ENST00000476413 USP17L12C9JPN9 530 aa10.81□□□□□ -0.68
VPS50-212ENST00000476413 USP17L11C9JVI0 530 aa10.81□□□□□ -0.68
VPS50-212ENST00000476413 USP17L21D6R901 530 aa10.81□□□□□ -0.68
VPS50-212ENST00000476413 USP17L18D6R9N7 530 aa10.81□□□□□ -0.68
VPS50-212ENST00000476413 USP17L22D6RA61 530 aa10.81□□□□□ -0.68
VPS50-212ENST00000476413 USP17L17D6RBQ6 530 aa10.81□□□□□ -0.68
VPS50-212ENST00000476413 USP17L19D6RCP7 530 aa10.81□□□□□ -0.68
VPS50-212ENST00000476413 USP17L20D6RJB6 530 aa10.81□□□□□ -0.68
VPS50-212ENST00000476413 LZTS3O60299 673 aaPredicted RBP10.81□□□□□ -0.68
VPS50-212ENST00000476413 SKOR1P84550 965 aa10.81□□□□□ -0.68
VPS50-212ENST00000476413 USP17L24Q0WX57 530 aa10.81□□□□□ -0.68
VPS50-212ENST00000476413 TRIM32Q13049 653 aa10.81□□□□□ -0.68
VPS50-212ENST00000476413 PTK7Q13308 1070 aa10.81□□□□□ -0.68
VPS50-212ENST00000476413 TMEM164Q5U3C3 297 aa10.81□□□□□ -0.68
VPS50-212ENST00000476413 NOVA2Q9UNW9 492 aaKnown RBP10.81□□□□□ -0.68
VPS50-212ENST00000476413 BRD1O95696 1058 aa10.8□□□□□ -0.68
VPS50-212ENST00000476413 SLC10A4Q96EP9 437 aa10.79□□□□□ -0.68
VPS50-212ENST00000476413 ATP5J2-PTCD1G3V325 749 aa10.78□□□□□ -0.68
VPS50-212ENST00000476413 CLDN10P78369 228 aa10.78□□□□□ -0.68
VPS50-212ENST00000476413 PPP1R18Q6NYC8 613 aa10.78□□□□□ -0.68
VPS50-212ENST00000476413 CDCA7Q9BWT1 371 aaPredicted RBP10.78□□□□□ -0.68
VPS50-212ENST00000476413 DKK1O94907 266 aa10.77□□□□□ -0.69
VPS50-212ENST00000476413 FAM69CQ0P6D2 419 aa10.77□□□□□ -0.69
VPS50-212ENST00000476413 EML3Q32P44 896 aa10.77□□□□□ -0.69
VPS50-212ENST00000476413 DOLKQ9UPQ8 538 aa10.77□□□□□ -0.69
VPS50-212ENST00000476413 ZBTB24O43167 697 aaPredicted RBP10.76□□□□□ -0.69
VPS50-212ENST00000476413 RASA1P20936 1047 aa10.76□□□□□ -0.69
VPS50-212ENST00000476413 WNT7BP56706 349 aa10.76□□□□□ -0.69
VPS50-212ENST00000476413 NBPF20Q3BBV1 942 aa10.76□□□□□ -0.69
VPS50-212ENST00000476413 EMID1Q96A84 441 aaPredicted RBP10.76□□□□□ -0.69
VPS50-212ENST00000476413 SLAIN2Q9P270 581 aa10.76□□□□□ -0.69
VPS50-212ENST00000476413 KCNA1Q09470 495 aa10.75□□□□□ -0.69
VPS50-212ENST00000476413 OGFOD1Q8N543 542 aa10.75□□□□□ -0.69
VPS50-212ENST00000476413 EIF4ENIF1Q9NRA8 985 aaKnown RBP10.75□□□□□ -0.69
VPS50-212ENST00000476413 KIAA1024Q9UPX6 916 aa10.75□□□□□ -0.69
VPS50-212ENST00000476413 ZBTB7BO15156 539 aaPredicted RBP10.74□□□□□ -0.69
VPS50-212ENST00000476413 GGCXP38435 758 aa10.74□□□□□ -0.69
VPS50-212ENST00000476413 RPIAP49247 311 aa10.74□□□□□ -0.69
VPS50-212ENST00000476413 RNF20Q5VTR2 975 aa10.74□□□□□ -0.69
VPS50-212ENST00000476413 LARP1Q6PKG0 1096 aaKnown RBP10.74□□□□□ -0.69
VPS50-212ENST00000476413 ANKMY2Q8IV38 441 aa10.74□□□□□ -0.69
VPS50-212ENST00000476413 VARSP26640 1264 aaKnown RBP10.73□□□□□ -0.69
VPS50-212ENST00000476413 OXLD1Q5BKU9 147 aa10.73□□□□□ -0.69
VPS50-212ENST00000476413 PHLDB3Q6NSJ2 640 aa10.73□□□□□ -0.69
VPS50-212ENST00000476413 SEPT12Q8IYM1 358 aa10.73□□□□□ -0.69
VPS50-212ENST00000476413 CDV3Q9UKY7 258 aaKnown RBP10.73□□□□□ -0.69
VPS50-212ENST00000476413 NOD1Q9Y239 953 aa10.73□□□□□ -0.69
VPS50-212ENST00000476413 MAP4K5Q9Y4K4 846 aa10.73□□□□□ -0.69
VPS50-212ENST00000476413 ZNF594Q96JF6 807 aaPredicted RBP10.72□□□□□ -0.69
VPS50-212ENST00000476413 KCTD15Q96SI1 283 aaPredicted RBP10.72□□□□□ -0.69
VPS50-212ENST00000476413 PCDHGA11Q9Y5H2 935 aa10.72□□□□□ -0.69
VPS50-212ENST00000476413 DPYDQ12882 1025 aa10.71□□□□□ -0.69
VPS50-212ENST00000476413 LIAT1Q6ZQX7 453 aa10.71□□□□□ -0.69
VPS50-212ENST00000476413 TRIM50Q86XT4 487 aa10.71□□□□□ -0.69
VPS50-212ENST00000476413 SIX5Q8N196 739 aa10.71□□□□□ -0.69
VPS50-212ENST00000476413 GZF1Q9H116 711 aaPredicted RBP10.71□□□□□ -0.69
VPS50-212ENST00000476413 DNAAF2Q9NVR5 837 aaKnown RBP10.71□□□□□ -0.69
VPS50-212ENST00000476413 PCDHB11Q9Y5F2 797 aa10.71□□□□□ -0.69
VPS50-212ENST00000476413 INTS6LQ5JSJ4 861 aaKnown RBP10.7□□□□□ -0.7
VPS50-212ENST00000476413 LARGE2Q8N3Y3 721 aa10.7□□□□□ -0.7
VPS50-212ENST00000476413 FAM200AQ8TCP9 573 aa10.7□□□□□ -0.7
VPS50-212ENST00000476413 ATP1A2P50993 1020 aa10.69□□□□□ -0.7
VPS50-212ENST00000476413 GTF2IP78347 998 aa10.69□□□□□ -0.7
VPS50-212ENST00000476413 CDK15Q96Q40 435 aa10.69□□□□□ -0.7
VPS50-212ENST00000476413 PATL2C9JE40 543 aaKnown RBP10.68□□□□□ -0.7
VPS50-212ENST00000476413 RC3H1Q5TC82 1133 aaKnown RBP10.68□□□□□ -0.7
VPS50-212ENST00000476413 CCDC125Q86Z20 511 aa10.68□□□□□ -0.7
VPS50-212ENST00000476413 CLP1Q92989 425 aaKnown RBP10.68□□□□□ -0.7
VPS50-212ENST00000476413 SCTRP47872 440 aa10.67□□□□□ -0.7
VPS50-212ENST00000476413 VASH1Q7L8A9 365 aaPredicted RBP10.67□□□□□ -0.7
VPS50-212ENST00000476413 CCDC9Q9Y3X0 531 aaKnown RBP10.67□□□□□ -0.7
VPS50-212ENST00000476413 ERVH48-1M5A8F1 160 aa10.66□□□□□ -0.7
VPS50-212ENST00000476413 SIAH2O43255 324 aa10.66□□□□□ -0.7
VPS50-212ENST00000476413 SSFA2P28290 1259 aa10.66□□□□□ -0.7
VPS50-212ENST00000476413 GRM5P41594 1212 aa10.66□□□□□ -0.7
VPS50-212ENST00000476413 RAB15P59190 212 aa10.66□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms